Strain Fitness in Sphingobium sp. HT1-2 around GFF5227

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,219,414	-				+0.7
5,219,484	-				-1.1
5,219,520	+				+0.3
5,219,525	+				-0.7
5,219,525	+				-0.6
5,219,525	+				-0.4
5,219,538	-				-0.2
5,219,548	-				+0.3
5,219,596	+				+0.2
5,219,596	+				-0.4
5,219,603	-				+0.4
5,219,604	+		GFF5226	0.10	+0.0
5,219,610	+		GFF5226	0.11	+0.7
5,219,635	+		GFF5226	0.15	-1.9
5,219,643	-		GFF5226	0.16	-0.4
5,219,664	+		GFF5226	0.20	-0.5
5,219,672	-		GFF5226	0.21	-0.9
5,219,673	+		GFF5226	0.21	-0.2
5,219,683	+		GFF5226	0.23	-1.3
5,219,692	+		GFF5226	0.24	-2.2
5,219,697	+		GFF5226	0.25	+1.3
5,219,697	+		GFF5226	0.25	+0.4
5,219,697	+		GFF5226	0.25	+0.4
5,219,700	-		GFF5226	0.25	-2.2
5,219,700	-		GFF5226	0.25	+1.7
5,219,706	-		GFF5226	0.26	+0.3
5,219,715	+		GFF5226	0.28	+0.6
5,219,715	-		GFF5226	0.28	-1.6
5,219,730	+		GFF5226	0.30	-0.1
5,219,730	+		GFF5226	0.30	-0.4
5,219,734	+		GFF5226	0.31	-0.5
5,219,756	+		GFF5226	0.34	+0.6
5,219,779	+		GFF5226	0.38	+0.2
5,219,779	+		GFF5226	0.38	+0.6
5,219,779	+		GFF5226	0.38	-0.2
5,219,779	+		GFF5226	0.38	-1.0
5,219,779	+		GFF5226	0.38	+1.4
5,219,787	-		GFF5226	0.39	-2.7
5,219,787	-		GFF5226	0.39	-1.2
5,219,787	-		GFF5226	0.39	+1.4
5,219,787	-		GFF5226	0.39	-1.5
5,219,789	+		GFF5226	0.40	-1.6
5,219,789	-		GFF5226	0.40	+0.6
5,219,797	-		GFF5226	0.41	-2.1
5,219,812	+		GFF5226	0.43	+0.3
5,219,814	-		GFF5226	0.44	-1.7
5,219,832	-		GFF5226	0.47	-0.3
5,219,903	-		GFF5226	0.58	+0.5
5,219,935	+		GFF5226	0.63	+0.6
5,219,935	+		GFF5226	0.63	-0.6
5,219,938	-		GFF5226	0.64	-0.9
5,219,943	-		GFF5226	0.65	+0.5
5,219,950	+		GFF5226	0.66	-0.9
5,219,960	+		GFF5226	0.67	+0.8
5,219,960	+		GFF5226	0.67	-0.1
5,219,960	+		GFF5226	0.67	-0.0
5,219,960	+		GFF5226	0.67	-0.6
5,219,960	+		GFF5226	0.67	-2.0
5,219,960	+		GFF5226	0.67	+0.4
5,219,960	+		GFF5226	0.67	-0.5
5,219,963	-		GFF5226	0.68	+1.0
5,219,965	+		GFF5226	0.68	-1.0
5,219,965	+		GFF5226	0.68	+0.7
5,219,967	+		GFF5226	0.68	-0.6
5,219,967	+		GFF5226	0.68	-0.9
5,219,967	+		GFF5226	0.68	-0.0
5,219,968	-		GFF5226	0.69	-1.2
5,219,968	-		GFF5226	0.69	+0.3
5,219,968	-		GFF5226	0.69	-0.4
5,219,968	-		GFF5226	0.69	-0.7
5,219,968	-		GFF5226	0.69	-1.0
5,219,975	-		GFF5226	0.70	-1.6
5,219,975	-		GFF5226	0.70	-0.2
5,219,975	-		GFF5226	0.70	+1.3
5,219,985	-		GFF5226	0.71	-1.0
5,219,998	+		GFF5226	0.73	+0.4
5,219,998	+		GFF5226	0.73	-0.7
5,220,006	-		GFF5226	0.75	+0.1
5,220,008	+		GFF5226	0.75	+1.0
5,220,008	+		GFF5226	0.75	-0.2
5,220,024	-		GFF5226	0.78	-2.6
5,220,064	+		GFF5226	0.84	-1.3
5,220,094	-		GFF5226	0.89	-1.5
5,220,138	+				+0.4
5,220,149	+				-1.6
5,220,157	+				-1.6
5,220,157	+				+0.3
5,220,157	+				+0.3
5,220,159	+				-0.2
5,220,159	+				-0.4
5,220,172	+				-2.6
5,220,176	-				+0.1
5,220,180	+				+0.3
5,220,194	+				+0.1
5,220,194	+				-1.6
5,220,194	+				-0.6
5,220,194	+				+0.7
5,220,194	-				-0.6
5,220,202	-				-1.7
5,220,208	+				+0.4
5,220,209	-				+0.7
5,220,224	-				+0.4
5,220,224	-				-1.3
5,220,240	-				-0.8
5,220,251	-				+0.3
5,220,261	+				-0.4
5,220,285	-				+0.9
5,220,287	+				+0.7
5,220,289	-				+1.2
5,220,307	-				+0.7
5,220,329	+				+0.4
5,220,355	+				-0.4
5,220,357	+				-0.0
5,220,373	-				-0.0
5,220,383	-				-1.1
5,220,383	-				+1.3
5,220,384	-				+0.4
5,220,409	-				-0.2
5,220,425	+		GFF5227	0.10	+0.6
5,220,435	+		GFF5227	0.12	-0.5
5,220,439	+		GFF5227	0.12	-0.7
5,220,440	-		GFF5227	0.13	+1.0
5,220,454	+		GFF5227	0.15	-0.0
5,220,488	+		GFF5227	0.20	+0.6
5,220,504	-		GFF5227	0.22	-1.2
5,220,512	-		GFF5227	0.23	-0.2
5,220,521	-		GFF5227	0.25	+0.8
5,220,528	+		GFF5227	0.26	-0.7
5,220,536	-		GFF5227	0.27	-0.8
5,220,559	-		GFF5227	0.30	+0.4
5,220,559	-		GFF5227	0.30	+0.0
5,220,561	-		GFF5227	0.31	+0.1
5,220,572	+		GFF5227	0.32	-0.6
5,220,641	-		GFF5227	0.43	-0.0
5,220,692	+		GFF5227	0.50	-0.2
5,220,692	+		GFF5227	0.50	-1.7
5,220,700	+		GFF5227	0.51	+0.3
5,220,721	-		GFF5227	0.55	+0.1
5,220,721	-		GFF5227	0.55	-1.2
5,220,731	-		GFF5227	0.56	+1.6
5,220,732	+		GFF5227	0.56	-0.6
5,220,740	-		GFF5227	0.57	-0.2
5,220,771	-		GFF5227	0.62	+0.4
5,220,773	+		GFF5227	0.62	+0.2
5,220,821	-		GFF5227	0.70	+0.0
5,220,831	-		GFF5227	0.71	+0.5
5,220,865	+		GFF5227	0.76	-0.0
5,220,899	-		GFF5227	0.81	+1.7
5,220,912	-		GFF5227	0.83	-0.3
5,220,912	-		GFF5227	0.83	-0.3
5,220,922	-		GFF5227	0.85	-0.4
5,220,949	-		GFF5227	0.89	-0.0
5,220,952	+		GFF5227	0.89	+0.5
5,221,012	-				+0.8
5,221,018	+				-1.2
5,221,018	+				-0.4
5,221,018	+				-0.6
5,221,019	+				-0.5
5,221,024	+				-1.7
5,221,026	-				+0.0
5,221,026	-				-1.6
5,221,026	-				+0.5
5,221,026	-				+0.7
5,221,026	-				+0.2
5,221,026	-				-0.1
5,221,033	-				+0.5
5,221,084	+				-0.6
5,221,084	+				+0.1
5,221,087	-				+0.3
5,221,099	-				+0.5
5,221,134	+				-1.5
5,221,171	+		GFF5228	0.16	-1.9
5,221,171	+		GFF5228	0.16	+1.3
5,221,171	+		GFF5228	0.16	+0.4
5,221,171	+		GFF5228	0.16	+1.1
5,221,171	+		GFF5228	0.16	+0.5
5,221,171	+		GFF5228	0.16	+0.9
5,221,171	+		GFF5228	0.16	-0.6
5,221,176	+		GFF5228	0.18	+0.6
5,221,179	-		GFF5228	0.19	+0.1
5,221,179	-		GFF5228	0.19	+0.4
5,221,179	-		GFF5228	0.19	-0.4
5,221,179	-		GFF5228	0.19	+0.4
5,221,179	-		GFF5228	0.19	-0.4
5,221,179	-		GFF5228	0.19	-2.5
5,221,179	-		GFF5228	0.19	-0.7
5,221,181	+		GFF5228	0.19	-1.6
5,221,186	-		GFF5228	0.21	+0.7
5,221,217	-		GFF5228	0.31	-0.2
5,221,223	+		GFF5228	0.33	-0.8
5,221,223	+		GFF5228	0.33	+0.1
5,221,223	+		GFF5228	0.33	+0.2
5,221,229	+		GFF5228	0.35	-0.3
5,221,229	+		GFF5228	0.35	+1.2
5,221,231	-		GFF5228	0.36	-0.5
5,221,237	-		GFF5228	0.38	-0.6
5,221,237	-		GFF5228	0.38	+0.1
5,221,237	-		GFF5228	0.38	-2.3
5,221,242	-		GFF5228	0.39	-1.2
5,221,550	+				-1.1
5,221,562	+				+1.0
5,221,620	+		GFF5229	0.14	-2.1
5,221,628	-		GFF5229	0.16	-1.7
5,221,628	-		GFF5229	0.16	-1.3
5,221,640	+		GFF5229	0.20	+1.2
5,221,643	+		GFF5229	0.20	-2.0
5,221,648	-		GFF5229	0.22	+0.2
5,221,648	-		GFF5229	0.22	-0.8
5,221,651	-		GFF5229	0.23	-1.5
5,221,651	-		GFF5229	0.23	-0.0
5,221,651	-		GFF5229	0.23	-0.6
5,221,687	+		GFF5229	0.33	-2.0
5,221,694	-		GFF5229	0.35	-2.8
5,221,728	+		GFF5229	0.45	-0.1
5,221,738	+		GFF5229	0.48	+1.6
5,221,746	-		GFF5229	0.50	-0.4
5,221,746	-		GFF5229	0.50	-0.8
5,221,748	+		GFF5229	0.51	+0.3
5,221,756	-		GFF5229	0.53	+0.1
5,221,760	+		GFF5229	0.54	-0.4
5,221,763	-		GFF5229	0.55	+0.1
5,221,763	-		GFF5229	0.55	+0.8
5,221,778	+		GFF5229	0.59	-1.6
5,221,789	-		GFF5229	0.62	+1.1
5,221,789	-		GFF5229	0.62	+0.1
5,221,789	-		GFF5229	0.62	+0.3
5,221,814	-		GFF5229	0.70	-0.3
5,221,837	+		GFF5229	0.76	-0.8
5,221,869	+		GFF5229	0.85	+1.3
5,221,883	-		GFF5229	0.89	-0.8
5,221,883	-		GFF5229	0.89	+1.2
5,221,892	-				+0.4
5,221,893	-				-0.2
5,221,905	+				-0.1
5,221,913	-				+1.0
5,221,934	-				+0.6
5,221,944	+				+0.2
5,221,944	+				-0.8
5,221,944	+				-0.6
5,221,944	+				+1.2
5,221,947	-				-1.3
5,221,952	-				-0.3
5,221,952	-				+0.0
5,221,952	-				-1.9
5,221,952	-				-0.7
5,221,956	-				+0.6
5,221,956	-				-1.1
5,221,966	-				-2.2
5,221,979	+				-1.0
5,221,993	+		GFF5230	0.12	-0.5