Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5207 and GFF5208 overlap by 4 nucleotides GFF5208 and GFF5209 overlap by 7 nucleotides GFF5209 and GFF5210 are separated by 158 nucleotides
GFF5207 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 5,202,177 to 5,204,534
GFF5207
GFF5208 - Protein formerly called heavy metal resistance transcriptional regulator HmrR, at 5,204,531 to 5,204,929
GFF5208
GFF5209 - hypothetical protein, at 5,204,923 to 5,205,144
GFF5209
GFF5210 - Polyhydroxyalkanoic acid synthase, at 5,205,303 to 5,207,054
GFF5210
Position (kb) 5204
5205 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5203.541 kb on + strand, within GFF5207 at 5203.541 kb on + strand, within GFF5207 at 5203.613 kb on + strand, within GFF5207 at 5203.642 kb on - strand, within GFF5207 at 5203.708 kb on + strand, within GFF5207 at 5203.727 kb on + strand, within GFF5207 at 5203.733 kb on + strand, within GFF5207 at 5203.735 kb on - strand, within GFF5207 at 5203.743 kb on + strand, within GFF5207 at 5203.758 kb on + strand, within GFF5207 at 5203.853 kb on + strand, within GFF5207 at 5203.856 kb on + strand, within GFF5207 at 5203.863 kb on + strand, within GFF5207 at 5203.863 kb on + strand, within GFF5207 at 5203.863 kb on + strand, within GFF5207 at 5203.866 kb on - strand, within GFF5207 at 5203.866 kb on - strand, within GFF5207 at 5203.868 kb on + strand, within GFF5207 at 5203.871 kb on - strand, within GFF5207 at 5203.876 kb on - strand, within GFF5207 at 5203.876 kb on - strand, within GFF5207 at 5203.901 kb on - strand, within GFF5207 at 5203.901 kb on - strand, within GFF5207 at 5203.906 kb on - strand, within GFF5207 at 5203.906 kb on - strand, within GFF5207 at 5204.007 kb on + strand, within GFF5207 at 5204.024 kb on + strand, within GFF5207 at 5204.063 kb on - strand, within GFF5207 at 5204.066 kb on + strand, within GFF5207 at 5204.069 kb on - strand, within GFF5207 at 5204.071 kb on + strand, within GFF5207 at 5204.074 kb on - strand, within GFF5207 at 5204.079 kb on - strand, within GFF5207 at 5204.116 kb on + strand, within GFF5207 at 5204.129 kb on - strand, within GFF5207 at 5204.135 kb on + strand, within GFF5207 at 5204.135 kb on + strand, within GFF5207 at 5204.138 kb on - strand, within GFF5207 at 5204.143 kb on - strand, within GFF5207 at 5204.154 kb on + strand, within GFF5207 at 5204.156 kb on + strand, within GFF5207 at 5204.156 kb on + strand, within GFF5207 at 5204.156 kb on + strand, within GFF5207 at 5204.156 kb on + strand, within GFF5207 at 5204.156 kb on + strand, within GFF5207 at 5204.164 kb on - strand, within GFF5207 at 5204.164 kb on - strand, within GFF5207 at 5204.164 kb on - strand, within GFF5207 at 5204.164 kb on - strand, within GFF5207 at 5204.164 kb on - strand, within GFF5207 at 5204.164 kb on - strand, within GFF5207 at 5204.164 kb on - strand, within GFF5207 at 5204.180 kb on + strand, within GFF5207 at 5204.199 kb on + strand, within GFF5207 at 5204.199 kb on - strand, within GFF5207 at 5204.209 kb on + strand, within GFF5207 at 5204.217 kb on - strand, within GFF5207 at 5204.217 kb on - strand, within GFF5207 at 5204.217 kb on - strand, within GFF5207 at 5204.291 kb on + strand, within GFF5207 at 5204.291 kb on + strand, within GFF5207 at 5204.291 kb on + strand, within GFF5207 at 5204.291 kb on + strand, within GFF5207 at 5204.291 kb on + strand, within GFF5207 at 5204.291 kb on + strand, within GFF5207 at 5204.291 kb on + strand, within GFF5207 at 5204.291 kb on + strand, within GFF5207 at 5204.291 kb on + strand, within GFF5207 at 5204.291 kb on + strand, within GFF5207 at 5204.291 kb on + strand, within GFF5207 at 5204.291 kb on + strand, within GFF5207 at 5204.291 kb on + strand, within GFF5207 at 5204.291 kb on + strand, within GFF5207 at 5204.291 kb on + strand, within GFF5207 at 5204.291 kb on + strand, within GFF5207 at 5204.291 kb on + strand, within GFF5207 at 5204.291 kb on + strand, within GFF5207 at 5204.291 kb on + strand, within GFF5207 at 5204.291 kb on + strand, within GFF5207 at 5204.299 kb on - strand at 5204.299 kb on - strand at 5204.299 kb on - strand at 5204.299 kb on - strand at 5204.299 kb on - strand at 5204.299 kb on - strand at 5204.299 kb on - strand at 5204.299 kb on - strand at 5204.299 kb on - strand at 5204.299 kb on - strand at 5204.299 kb on - strand at 5204.299 kb on - strand at 5204.299 kb on - strand at 5204.299 kb on - strand at 5204.299 kb on - strand at 5204.299 kb on - strand at 5204.304 kb on + strand at 5204.305 kb on - strand at 5204.310 kb on + strand at 5204.312 kb on - strand at 5204.391 kb on - strand at 5204.432 kb on + strand at 5204.438 kb on - strand at 5204.477 kb on - strand at 5204.512 kb on + strand at 5204.519 kb on + strand at 5204.547 kb on + strand at 5204.651 kb on - strand, within GFF5208 at 5204.661 kb on - strand, within GFF5208 at 5204.716 kb on + strand, within GFF5208 at 5204.716 kb on + strand, within GFF5208 at 5204.716 kb on + strand, within GFF5208 at 5204.724 kb on - strand, within GFF5208 at 5204.724 kb on - strand, within GFF5208 at 5204.724 kb on - strand, within GFF5208 at 5204.724 kb on - strand, within GFF5208 at 5204.733 kb on + strand, within GFF5208 at 5204.750 kb on + strand, within GFF5208 at 5204.758 kb on - strand, within GFF5208 at 5204.758 kb on - strand, within GFF5208 at 5204.793 kb on - strand, within GFF5208 at 5204.799 kb on - strand, within GFF5208 at 5204.821 kb on + strand, within GFF5208 at 5204.827 kb on - strand, within GFF5208 at 5204.841 kb on - strand, within GFF5208 at 5204.841 kb on - strand, within GFF5208 at 5204.873 kb on - strand, within GFF5208 at 5204.940 kb on - strand at 5204.941 kb on + strand at 5204.946 kb on + strand, within GFF5209 at 5204.946 kb on + strand, within GFF5209 at 5204.946 kb on + strand, within GFF5209 at 5204.949 kb on - strand, within GFF5209 at 5204.949 kb on - strand, within GFF5209 at 5204.951 kb on + strand, within GFF5209 at 5204.954 kb on - strand, within GFF5209 at 5204.954 kb on - strand, within GFF5209 at 5204.954 kb on - strand, within GFF5209 at 5204.954 kb on - strand, within GFF5209 at 5204.954 kb on - strand, within GFF5209 at 5204.954 kb on - strand, within GFF5209 at 5204.959 kb on - strand, within GFF5209 at 5204.959 kb on - strand, within GFF5209 at 5204.959 kb on - strand, within GFF5209 at 5204.971 kb on + strand, within GFF5209 at 5205.073 kb on + strand, within GFF5209 at 5205.121 kb on - strand, within GFF5209 at 5205.176 kb on + strand at 5205.178 kb on + strand at 5205.183 kb on + strand at 5205.184 kb on - strand at 5205.193 kb on + strand at 5205.200 kb on + strand at 5205.212 kb on + strand at 5205.222 kb on + strand at 5205.230 kb on + strand at 5205.232 kb on + strand at 5205.232 kb on + strand at 5205.237 kb on + strand at 5205.237 kb on + strand at 5205.237 kb on + strand at 5205.237 kb on + strand at 5205.237 kb on + strand at 5205.237 kb on + strand at 5205.237 kb on + strand at 5205.238 kb on - strand at 5205.239 kb on + strand at 5205.239 kb on + strand at 5205.240 kb on - strand at 5205.245 kb on - strand at 5205.245 kb on - strand at 5205.245 kb on - strand at 5205.245 kb on - strand at 5205.245 kb on - strand at 5205.245 kb on - strand at 5205.245 kb on - strand at 5205.245 kb on - strand at 5205.247 kb on - strand at 5205.247 kb on - strand at 5205.247 kb on - strand at 5205.249 kb on + strand at 5205.249 kb on + strand at 5205.256 kb on + strand at 5205.325 kb on - strand at 5205.325 kb on - strand at 5205.344 kb on + strand at 5205.348 kb on - strand at 5205.359 kb on - strand at 5205.391 kb on + strand at 5205.391 kb on + strand at 5205.391 kb on + strand at 5205.394 kb on - strand at 5205.399 kb on - strand at 5205.399 kb on - strand at 5205.399 kb on - strand at 5205.399 kb on - strand at 5205.399 kb on - strand at 5205.422 kb on + strand at 5205.422 kb on + strand at 5205.422 kb on + strand at 5205.422 kb on + strand at 5205.422 kb on + strand at 5205.422 kb on + strand at 5205.444 kb on - strand at 5205.460 kb on - strand at 5205.522 kb on + strand, within GFF5210 at 5205.522 kb on + strand, within GFF5210 at 5205.522 kb on + strand, within GFF5210 at 5205.547 kb on + strand, within GFF5210 at 5205.600 kb on + strand, within GFF5210 at 5205.602 kb on + strand, within GFF5210 at 5205.608 kb on - strand, within GFF5210 at 5205.608 kb on - strand, within GFF5210 at 5205.616 kb on + strand, within GFF5210 at 5205.630 kb on + strand, within GFF5210 at 5205.638 kb on - strand, within GFF5210 at 5205.686 kb on - strand, within GFF5210 at 5205.691 kb on + strand, within GFF5210 at 5205.709 kb on - strand, within GFF5210 at 5205.719 kb on - strand, within GFF5210 at 5205.757 kb on - strand, within GFF5210 at 5205.760 kb on + strand, within GFF5210 at 5205.775 kb on + strand, within GFF5210 at 5205.775 kb on + strand, within GFF5210 at 5205.778 kb on - strand, within GFF5210 at 5205.778 kb on - strand, within GFF5210 at 5205.783 kb on - strand, within GFF5210 at 5205.810 kb on + strand, within GFF5210 at 5205.817 kb on + strand, within GFF5210 at 5205.818 kb on - strand, within GFF5210 at 5205.821 kb on + strand, within GFF5210 at 5205.829 kb on - strand, within GFF5210 at 5205.829 kb on - strand, within GFF5210 at 5205.849 kb on + strand, within GFF5210 at 5205.884 kb on + strand, within GFF5210 at 5205.901 kb on - strand, within GFF5210 at 5205.901 kb on - strand, within GFF5210 at 5205.901 kb on - strand, within GFF5210 at 5205.929 kb on - strand, within GFF5210
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 5,203,541 + GFF5207 0.58 -0.9 5,203,541 + GFF5207 0.58 -0.1 5,203,613 + GFF5207 0.61 -1.5 5,203,642 - GFF5207 0.62 -0.1 5,203,708 + GFF5207 0.65 -0.5 5,203,727 + GFF5207 0.66 +1.2 5,203,733 + GFF5207 0.66 +0.5 5,203,735 - GFF5207 0.66 -0.4 5,203,743 + GFF5207 0.66 +0.3 5,203,758 + GFF5207 0.67 +0.9 5,203,853 + GFF5207 0.71 -0.0 5,203,856 + GFF5207 0.71 +1.0 5,203,863 + GFF5207 0.72 +0.5 5,203,863 + GFF5207 0.72 +1.8 5,203,863 + GFF5207 0.72 +0.9 5,203,866 - GFF5207 0.72 -0.0 5,203,866 - GFF5207 0.72 -0.5 5,203,868 + GFF5207 0.72 +0.1 5,203,871 - GFF5207 0.72 +0.8 5,203,876 - GFF5207 0.72 +0.1 5,203,876 - GFF5207 0.72 +0.6 5,203,901 - GFF5207 0.73 -0.8 5,203,901 - GFF5207 0.73 -1.6 5,203,906 - GFF5207 0.73 -0.8 5,203,906 - GFF5207 0.73 -0.9 5,204,007 + GFF5207 0.78 -0.1 5,204,024 + GFF5207 0.78 -0.1 5,204,063 - GFF5207 0.80 +1.0 5,204,066 + GFF5207 0.80 -0.0 5,204,069 - GFF5207 0.80 +1.3 5,204,071 + GFF5207 0.80 +0.4 5,204,074 - GFF5207 0.80 -0.1 5,204,079 - GFF5207 0.81 +0.4 5,204,116 + GFF5207 0.82 -0.2 5,204,129 - GFF5207 0.83 -2.6 5,204,135 + GFF5207 0.83 +1.2 5,204,135 + GFF5207 0.83 +0.2 5,204,138 - GFF5207 0.83 -0.7 5,204,143 - GFF5207 0.83 -0.1 5,204,154 + GFF5207 0.84 +0.7 5,204,156 + GFF5207 0.84 -1.4 5,204,156 + GFF5207 0.84 +0.9 5,204,156 + GFF5207 0.84 -0.2 5,204,156 + GFF5207 0.84 -0.2 5,204,156 + GFF5207 0.84 +0.0 5,204,164 - GFF5207 0.84 +1.6 5,204,164 - GFF5207 0.84 +0.7 5,204,164 - GFF5207 0.84 -0.0 5,204,164 - GFF5207 0.84 -1.3 5,204,164 - GFF5207 0.84 -0.1 5,204,164 - GFF5207 0.84 -0.5 5,204,164 - GFF5207 0.84 +0.6 5,204,180 + GFF5207 0.85 +0.3 5,204,199 + GFF5207 0.86 +0.9 5,204,199 - GFF5207 0.86 -0.2 5,204,209 + GFF5207 0.86 -0.7 5,204,217 - GFF5207 0.87 -0.5 5,204,217 - GFF5207 0.87 +1.2 5,204,217 - GFF5207 0.87 +0.3 5,204,291 + GFF5207 0.90 -1.9 5,204,291 + GFF5207 0.90 -1.1 5,204,291 + GFF5207 0.90 +0.2 5,204,291 + GFF5207 0.90 +0.2 5,204,291 + GFF5207 0.90 +1.1 5,204,291 + GFF5207 0.90 -1.4 5,204,291 + GFF5207 0.90 +1.5 5,204,291 + GFF5207 0.90 +1.0 5,204,291 + GFF5207 0.90 -0.5 5,204,291 + GFF5207 0.90 -0.9 5,204,291 + GFF5207 0.90 +0.7 5,204,291 + GFF5207 0.90 -0.8 5,204,291 + GFF5207 0.90 +0.8 5,204,291 + GFF5207 0.90 +0.1 5,204,291 + GFF5207 0.90 -1.6 5,204,291 + GFF5207 0.90 +1.5 5,204,291 + GFF5207 0.90 -0.2 5,204,291 + GFF5207 0.90 -0.8 5,204,291 + GFF5207 0.90 -0.4 5,204,291 + GFF5207 0.90 +0.7 5,204,299 - -1.1 5,204,299 - -0.1 5,204,299 - +0.3 5,204,299 - -1.1 5,204,299 - -1.5 5,204,299 - +1.1 5,204,299 - -0.7 5,204,299 - -0.5 5,204,299 - +0.4 5,204,299 - -0.0 5,204,299 - +0.5 5,204,299 - -2.2 5,204,299 - -2.4 5,204,299 - +0.9 5,204,299 - -0.6 5,204,299 - -0.6 5,204,304 + +0.6 5,204,305 - +0.4 5,204,310 + -0.5 5,204,312 - -1.6 5,204,391 - +0.3 5,204,432 + -1.0 5,204,438 - -2.1 5,204,477 - +1.0 5,204,512 + +0.4 5,204,519 + -1.6 5,204,547 + -0.7 5,204,651 - GFF5208 0.30 +0.9 5,204,661 - GFF5208 0.33 +0.9 5,204,716 + GFF5208 0.46 -0.2 5,204,716 + GFF5208 0.46 -0.0 5,204,716 + GFF5208 0.46 -0.6 5,204,724 - GFF5208 0.48 -1.4 5,204,724 - GFF5208 0.48 +0.5 5,204,724 - GFF5208 0.48 +0.0 5,204,724 - GFF5208 0.48 -0.8 5,204,733 + GFF5208 0.51 +1.2 5,204,750 + GFF5208 0.55 +0.3 5,204,758 - GFF5208 0.57 -1.9 5,204,758 - GFF5208 0.57 +0.5 5,204,793 - GFF5208 0.66 -0.4 5,204,799 - GFF5208 0.67 +0.6 5,204,821 + GFF5208 0.73 -2.0 5,204,827 - GFF5208 0.74 +0.1 5,204,841 - GFF5208 0.78 +0.4 5,204,841 - GFF5208 0.78 +0.1 5,204,873 - GFF5208 0.86 +0.9 5,204,940 - -0.3 5,204,941 + +0.6 5,204,946 + GFF5209 0.10 -0.7 5,204,946 + GFF5209 0.10 -1.5 5,204,946 + GFF5209 0.10 -0.8 5,204,949 - GFF5209 0.12 -0.1 5,204,949 - GFF5209 0.12 -2.0 5,204,951 + GFF5209 0.13 +0.4 5,204,954 - GFF5209 0.14 -0.1 5,204,954 - GFF5209 0.14 -0.7 5,204,954 - GFF5209 0.14 -1.0 5,204,954 - GFF5209 0.14 -0.4 5,204,954 - GFF5209 0.14 +0.3 5,204,954 - GFF5209 0.14 -0.1 5,204,959 - GFF5209 0.16 -0.6 5,204,959 - GFF5209 0.16 +0.5 5,204,959 - GFF5209 0.16 +0.1 5,204,971 + GFF5209 0.22 -1.5 5,205,073 + GFF5209 0.68 +0.2 5,205,121 - GFF5209 0.89 +0.3 5,205,176 + +1.2 5,205,178 + +1.1 5,205,183 + +0.1 5,205,184 - -0.1 5,205,193 + -1.0 5,205,200 + -1.7 5,205,212 + +0.2 5,205,222 + -0.1 5,205,230 + +0.6 5,205,232 + -2.4 5,205,232 + -1.0 5,205,237 + +0.3 5,205,237 + +0.5 5,205,237 + -1.3 5,205,237 + -2.5 5,205,237 + -1.6 5,205,237 + -0.9 5,205,237 + -0.1 5,205,238 - -0.5 5,205,239 + +0.4 5,205,239 + +0.2 5,205,240 - +0.7 5,205,245 - +0.2 5,205,245 - -1.1 5,205,245 - +0.2 5,205,245 - -0.2 5,205,245 - -0.9 5,205,245 - +0.1 5,205,245 - +0.5 5,205,245 - -0.0 5,205,247 - +0.0 5,205,247 - +0.0 5,205,247 - +0.4 5,205,249 + +0.1 5,205,249 + +0.1 5,205,256 + -0.5 5,205,325 - -1.3 5,205,325 - +0.0 5,205,344 + -0.4 5,205,348 - +0.4 5,205,359 - +0.6 5,205,391 + -0.1 5,205,391 + -1.7 5,205,391 + +0.5 5,205,394 - -0.6 5,205,399 - -1.6 5,205,399 - +1.0 5,205,399 - -0.0 5,205,399 - -2.5 5,205,399 - -0.3 5,205,422 + +0.6 5,205,422 + +0.9 5,205,422 + +0.2 5,205,422 + -0.8 5,205,422 + +0.6 5,205,422 + -0.1 5,205,444 - +0.1 5,205,460 - +0.3 5,205,522 + GFF5210 0.12 +1.3 5,205,522 + GFF5210 0.12 -1.6 5,205,522 + GFF5210 0.12 -1.3 5,205,547 + GFF5210 0.14 -0.4 5,205,600 + GFF5210 0.17 +0.4 5,205,602 + GFF5210 0.17 -0.5 5,205,608 - GFF5210 0.17 -1.0 5,205,608 - GFF5210 0.17 -1.0 5,205,616 + GFF5210 0.18 -1.9 5,205,630 + GFF5210 0.19 -0.2 5,205,638 - GFF5210 0.19 +0.7 5,205,686 - GFF5210 0.22 +0.7 5,205,691 + GFF5210 0.22 -0.5 5,205,709 - GFF5210 0.23 -1.2 5,205,719 - GFF5210 0.24 +1.4 5,205,757 - GFF5210 0.26 +1.4 5,205,760 + GFF5210 0.26 +1.1 5,205,775 + GFF5210 0.27 -1.4 5,205,775 + GFF5210 0.27 +1.6 5,205,778 - GFF5210 0.27 -0.6 5,205,778 - GFF5210 0.27 -0.8 5,205,783 - GFF5210 0.27 -0.1 5,205,810 + GFF5210 0.29 +1.1 5,205,817 + GFF5210 0.29 +0.7 5,205,818 - GFF5210 0.29 -0.9 5,205,821 + GFF5210 0.30 -0.4 5,205,829 - GFF5210 0.30 -0.1 5,205,829 - GFF5210 0.30 +0.1 5,205,849 + GFF5210 0.31 -0.7 5,205,884 + GFF5210 0.33 -1.4 5,205,901 - GFF5210 0.34 +0.5 5,205,901 - GFF5210 0.34 -0.5 5,205,901 - GFF5210 0.34 +0.8 5,205,929 - GFF5210 0.36 +0.6
Or see this region's nucleotide sequence