Strain Fitness in Sphingobium sp. HT1-2 around GFF5196

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,191,981	+		GFF5194	0.54	+0.0
5,191,981	+		GFF5194	0.54	-0.5
5,191,983	-		GFF5194	0.54	+0.0
5,191,983	-		GFF5194	0.54	+0.1
5,191,989	-		GFF5194	0.55	-0.1
5,191,989	-		GFF5194	0.55	-0.3
5,191,994	-		GFF5194	0.55	+0.3
5,192,008	-		GFF5194	0.56	+0.8
5,192,008	-		GFF5194	0.56	+0.0
5,192,008	-		GFF5194	0.56	+0.4
5,192,008	-		GFF5194	0.56	+0.8
5,192,008	-		GFF5194	0.56	-1.9
5,192,066	+		GFF5194	0.61	-1.6
5,192,066	+		GFF5194	0.61	-0.8
5,192,066	+		GFF5194	0.61	-0.1
5,192,066	+		GFF5194	0.61	+0.7
5,192,071	+		GFF5194	0.61	+0.1
5,192,074	-		GFF5194	0.61	-0.8
5,192,077	-		GFF5194	0.62	+0.9
5,192,079	-		GFF5194	0.62	-0.5
5,192,079	-		GFF5194	0.62	-0.1
5,192,159	-		GFF5194	0.68	-0.6
5,192,160	-		GFF5194	0.68	-0.0
5,192,172	+		GFF5194	0.69	-1.2
5,192,172	+		GFF5194	0.69	+0.4
5,192,172	-		GFF5194	0.69	-0.9
5,192,177	+		GFF5194	0.69	+0.8
5,192,214	+		GFF5194	0.72	-0.2
5,192,251	-		GFF5194	0.75	-0.0
5,192,278	-		GFF5194	0.77	-2.0
5,192,278	-		GFF5194	0.77	-0.7
5,192,278	-		GFF5194	0.77	-0.6
5,192,290	-		GFF5194	0.78	+1.2
5,192,321	-		GFF5194	0.81	-1.1
5,192,334	+		GFF5194	0.82	+0.9
5,192,363	-		GFF5194	0.84	+0.2
5,192,367	+		GFF5194	0.84	-0.6
5,192,375	-		GFF5194	0.85	-0.2
5,192,375	-		GFF5194	0.85	+0.2
5,192,397	-		GFF5194	0.87	+0.9
5,192,399	-		GFF5194	0.87	+1.0
5,192,447	-				+0.3
5,192,472	+				-1.7
5,192,475	-				+0.4
5,192,489	+				+1.5
5,192,495	+				+0.8
5,192,504	-				-1.1
5,192,523	+				-0.2
5,192,542	-				+0.4
5,192,547	-				-0.3
5,192,551	+				+0.7
5,192,551	+				-1.3
5,192,551	+				-2.4
5,192,551	+				+1.0
5,192,551	+				-0.9
5,192,551	+				-0.4
5,192,557	+				+1.1
5,192,558	-				-2.7
5,192,558	-				-0.5
5,192,559	-				-0.4
5,192,559	-				-0.3
5,192,559	-				+1.4
5,192,559	-				-1.3
5,192,559	-				-0.0
5,192,559	-				-0.2
5,192,559	-				-1.4
5,192,559	-				+0.3
5,192,559	-				-0.5
5,192,559	-				+1.3
5,192,559	-				-0.6
5,192,592	+				-1.6
5,192,599	+				-2.0
5,192,600	-				+1.6
5,192,608	+		GFF5195	0.11	-0.5
5,192,899	+				+0.5
5,192,907	-				+0.3
5,192,960	-				+0.3
5,192,969	+				+0.3
5,193,011	+				+0.0
5,193,025	+				+2.0
5,193,025	+				+1.1
5,193,025	+				-1.7
5,193,033	-				-1.2
5,193,033	-				+0.4
5,193,033	-				-0.6
5,193,043	-				-0.9
5,193,080	+		GFF5196	0.11	+0.7
5,193,080	+		GFF5196	0.11	+0.4
5,193,088	+		GFF5196	0.12	-1.2
5,193,096	-		GFF5196	0.13	+1.0
5,193,102	+		GFF5196	0.14	-0.5
5,193,102	-		GFF5196	0.14	-0.2
5,193,109	+		GFF5196	0.15	+0.5
5,193,117	-		GFF5196	0.16	-2.7
5,193,148	+		GFF5196	0.19	+1.2
5,193,148	+		GFF5196	0.19	-2.0
5,193,165	+		GFF5196	0.21	+0.0
5,193,184	-		GFF5196	0.23	-2.1
5,193,214	-		GFF5196	0.27	+0.4
5,193,235	+		GFF5196	0.29	+0.2
5,193,248	+		GFF5196	0.31	-1.6
5,193,253	+		GFF5196	0.31	+0.5
5,193,253	+		GFF5196	0.31	+1.2
5,193,256	-		GFF5196	0.32	+0.8
5,193,261	-		GFF5196	0.32	-0.5
5,193,261	-		GFF5196	0.32	+0.9
5,193,273	+		GFF5196	0.34	-0.6
5,193,304	-		GFF5196	0.37	-1.0
5,193,304	-		GFF5196	0.37	-0.9
5,193,306	+		GFF5196	0.37	+0.2
5,193,345	+		GFF5196	0.42	+0.0
5,193,345	+		GFF5196	0.42	-0.3
5,193,353	-		GFF5196	0.43	-1.5
5,193,376	-		GFF5196	0.45	-1.0
5,193,421	+		GFF5196	0.51	+0.8
5,193,434	+		GFF5196	0.52	-0.2
5,193,473	+		GFF5196	0.56	+0.7
5,193,473	+		GFF5196	0.56	-0.3
5,193,473	+		GFF5196	0.56	+0.3
5,193,474	-		GFF5196	0.57	-1.0
5,193,481	-		GFF5196	0.57	-0.7
5,193,481	-		GFF5196	0.57	+1.1
5,193,488	+		GFF5196	0.58	-0.6
5,193,547	+		GFF5196	0.65	-0.6
5,193,581	-		GFF5196	0.69	+0.6
5,193,608	-		GFF5196	0.72	-0.6
5,193,638	-		GFF5196	0.75	+0.7
5,193,641	+		GFF5196	0.76	+0.5
5,193,661	+		GFF5196	0.78	+0.4
5,193,661	+		GFF5196	0.78	+0.3
5,193,661	+		GFF5196	0.78	-0.2
5,193,661	+		GFF5196	0.78	-0.3
5,193,682	-		GFF5196	0.80	-0.6
5,193,687	+		GFF5196	0.81	+0.0
5,193,687	+		GFF5196	0.81	-0.8
5,193,687	-		GFF5196	0.81	-2.6
5,193,695	-		GFF5196	0.82	-1.4
5,193,711	+		GFF5196	0.84	-0.2
5,193,724	-		GFF5196	0.85	-1.2
5,193,759	+		GFF5196	0.89	-0.3
5,193,759	+		GFF5196	0.89	+0.4
5,193,767	-				-0.6
5,193,767	-				+1.0
5,193,767	-				-0.7
5,193,782	+				-0.4
5,193,869	-				-0.0
5,193,869	-				+0.4
5,193,869	-				-0.7
5,193,869	-				-1.0
5,194,110	+				+0.3
5,194,110	+				+0.6
5,194,130	-				+0.3
5,194,213	-				-0.7
5,194,233	-				-0.1
5,194,233	-				+0.4
5,194,268	+				-0.1
5,194,268	+				-2.2
5,194,268	+				-0.6
5,194,268	+				-0.1
5,194,268	+				-0.4
5,194,268	+				+0.4
5,194,275	+				-0.6
5,194,276	-				+0.3
5,194,276	-				-0.7
5,194,276	-				+0.7
5,194,276	-				+0.7
5,194,281	-				+0.6
5,194,281	-				+0.4
5,194,282	+				-1.5
5,194,282	+				-1.7
5,194,288	-				-0.6
5,194,288	-				+0.8
5,194,288	-				-1.4
5,194,290	-				+0.3
5,194,295	+				-0.3
5,194,309	+				+0.8
5,194,331	+				+1.4
5,194,342	+				-0.3
5,194,342	+				-0.1
5,194,350	-				-1.9
5,194,350	-				-1.2
5,194,350	-				-1.6
5,194,351	+				+0.8
5,194,359	-				-0.7
5,194,362	+				+1.0
5,194,400	-				-0.7
5,194,412	-				-1.0
5,194,414	-		GFF5197	0.10	+1.3
5,194,421	-		GFF5197	0.10	+1.0
5,194,430	-		GFF5197	0.11	-0.7
5,194,432	+		GFF5197	0.11	+0.9
5,194,432	+		GFF5197	0.11	-0.3
5,194,440	-		GFF5197	0.12	-2.0
5,194,460	+		GFF5197	0.13	-1.0
5,194,460	-		GFF5197	0.13	+0.1
5,194,461	-		GFF5197	0.13	-0.0
5,194,468	-		GFF5197	0.13	-2.3
5,194,521	+		GFF5197	0.16	-0.3
5,194,542	-		GFF5197	0.17	-1.2
5,194,557	+		GFF5197	0.18	-2.1
5,194,565	-		GFF5197	0.19	-0.2
5,194,565	-		GFF5197	0.19	+0.2
5,194,602	+		GFF5197	0.21	+0.2
5,194,605	-		GFF5197	0.21	+1.7
5,194,605	-		GFF5197	0.21	-0.6
5,194,620	-		GFF5197	0.22	+0.9
5,194,644	+		GFF5197	0.23	+1.7
5,194,732	-		GFF5197	0.28	+0.6
5,194,749	+		GFF5197	0.29	+0.2
5,194,757	-		GFF5197	0.29	+1.1
5,194,757	-		GFF5197	0.29	-1.0
5,194,758	-		GFF5197	0.29	-0.3
5,194,784	+		GFF5197	0.31	+0.7
5,194,795	+		GFF5197	0.32	+0.8
5,194,807	+		GFF5197	0.32	-1.0
5,194,807	+		GFF5197	0.32	+0.1