Strain Fitness in Sphingobium sp. HT1-2 around GFF5173

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,163,467	+		GFF5172	0.44	+0.9
5,163,476	+		GFF5172	0.45	-0.8
5,163,476	+		GFF5172	0.45	-0.8
5,163,476	+		GFF5172	0.45	-0.9
5,163,476	+		GFF5172	0.45	-0.9
5,163,476	+		GFF5172	0.45	-0.2
5,163,476	+		GFF5172	0.45	-0.5
5,163,476	+		GFF5172	0.45	-0.4
5,163,476	+		GFF5172	0.45	+0.5
5,163,476	+		GFF5172	0.45	+0.1
5,163,476	+		GFF5172	0.45	+0.2
5,163,476	+		GFF5172	0.45	+1.1
5,163,481	+		GFF5172	0.45	-2.3
5,163,481	+		GFF5172	0.45	+0.1
5,163,484	-		GFF5172	0.45	-0.4
5,163,484	-		GFF5172	0.45	-0.1
5,163,484	-		GFF5172	0.45	+1.1
5,163,484	-		GFF5172	0.45	-0.9
5,163,484	-		GFF5172	0.45	-2.0
5,163,484	-		GFF5172	0.45	+1.1
5,163,484	-		GFF5172	0.45	+0.9
5,163,484	-		GFF5172	0.45	-0.5
5,163,484	-		GFF5172	0.45	-2.3
5,163,489	-		GFF5172	0.46	+0.4
5,163,489	-		GFF5172	0.46	-1.2
5,163,496	+		GFF5172	0.46	-0.4
5,163,499	-		GFF5172	0.47	-0.9
5,163,506	-		GFF5172	0.47	+1.0
5,163,511	+		GFF5172	0.48	-0.1
5,163,537	+		GFF5172	0.50	-0.6
5,163,537	+		GFF5172	0.50	-0.9
5,163,537	+		GFF5172	0.50	-1.3
5,163,545	-		GFF5172	0.51	-0.3
5,163,545	-		GFF5172	0.51	-1.5
5,163,545	-		GFF5172	0.51	+0.2
5,163,590	+		GFF5172	0.54	-2.2
5,163,590	+		GFF5172	0.54	+0.3
5,163,593	+		GFF5172	0.55	-0.3
5,163,608	+		GFF5172	0.56	-0.9
5,163,628	+		GFF5172	0.58	+0.3
5,163,628	+		GFF5172	0.58	+0.6
5,163,636	+		GFF5172	0.58	+1.0
5,163,638	+		GFF5172	0.58	+0.3
5,163,642	-		GFF5172	0.59	-0.8
5,163,644	+		GFF5172	0.59	-0.6
5,163,646	-		GFF5172	0.59	-2.3
5,163,654	-		GFF5172	0.60	-1.0
5,163,679	+		GFF5172	0.62	-0.8
5,163,679	+		GFF5172	0.62	-0.3
5,163,686	+		GFF5172	0.63	-0.3
5,163,697	-		GFF5172	0.64	-1.0
5,163,697	-		GFF5172	0.64	+0.1
5,163,697	-		GFF5172	0.64	+0.1
5,163,699	+		GFF5172	0.64	+0.3
5,163,699	+		GFF5172	0.64	+0.9
5,163,699	+		GFF5172	0.64	-0.3
5,163,699	+		GFF5172	0.64	-0.0
5,163,699	+		GFF5172	0.64	-2.9
5,163,699	+		GFF5172	0.64	+0.0
5,163,699	+		GFF5172	0.64	-0.3
5,163,699	+		GFF5172	0.64	-3.6
5,163,699	+		GFF5172	0.64	+0.0
5,163,707	-		GFF5172	0.64	+0.7
5,163,707	-		GFF5172	0.64	-0.4
5,163,707	-		GFF5172	0.64	+0.2
5,163,707	-		GFF5172	0.64	+1.0
5,163,707	-		GFF5172	0.64	-2.1
5,163,707	-		GFF5172	0.64	-0.9
5,163,707	-		GFF5172	0.64	-0.0
5,163,707	-		GFF5172	0.64	-1.6
5,163,707	-		GFF5172	0.64	-1.8
5,163,707	-		GFF5172	0.64	-2.3
5,163,707	-		GFF5172	0.64	-0.8
5,163,709	+		GFF5172	0.65	-1.2
5,163,709	+		GFF5172	0.65	-1.6
5,163,709	+		GFF5172	0.65	-1.1
5,163,714	+		GFF5172	0.65	-1.1
5,163,717	-		GFF5172	0.65	+0.1
5,163,717	-		GFF5172	0.65	-0.4
5,163,717	-		GFF5172	0.65	+1.4
5,163,724	+		GFF5172	0.66	-1.9
5,163,724	+		GFF5172	0.66	-1.0
5,163,724	+		GFF5172	0.66	+1.4
5,163,724	-		GFF5172	0.66	-0.8
5,163,727	-		GFF5172	0.66	+0.3
5,163,729	+		GFF5172	0.66	-1.1
5,163,729	+		GFF5172	0.66	-0.6
5,163,737	+		GFF5172	0.67	-1.7
5,163,737	-		GFF5172	0.67	-2.0
5,163,745	-		GFF5172	0.68	+0.0
5,163,805	-		GFF5172	0.73	-0.2
5,163,818	-		GFF5172	0.74	-2.0
5,163,819	-		GFF5172	0.74	-0.5
5,163,823	-		GFF5172	0.74	-1.8
5,163,824	+		GFF5172	0.74	-1.4
5,163,824	-		GFF5172	0.74	-0.5
5,163,831	+		GFF5172	0.75	-1.7
5,163,831	+		GFF5172	0.75	+0.2
5,163,838	+		GFF5172	0.76	-2.4
5,163,842	+		GFF5172	0.76	-1.5
5,163,857	-		GFF5172	0.77	+1.0
5,163,866	+		GFF5172	0.78	-0.6
5,163,866	+		GFF5172	0.78	-0.9
5,163,958	+		GFF5172	0.86	-1.2
5,163,966	-		GFF5172	0.86	+0.3
5,163,966	-		GFF5172	0.86	+0.1
5,164,018	+				+0.4
5,164,022	+				+0.4
5,164,030	-				+0.4
5,164,038	+				-0.8
5,164,038	+				+0.3
5,164,066	+				-2.1
5,164,084	-				-0.1
5,164,087	+				-0.3
5,164,102	+				+0.6
5,164,104	+				-2.5
5,164,104	+				+0.7
5,164,109	+				+0.8
5,164,112	-				-0.1
5,164,112	-				-0.4
5,164,117	-				+1.6
5,164,119	+				-1.1
5,164,119	+				-0.4
5,164,127	-				+0.3
5,164,146	+				-0.7
5,164,147	+				+0.1
5,164,155	-				-0.5
5,164,250	-				+0.9
5,164,270	-				-1.8
5,164,284	+				+1.9
5,164,285	-				-1.0
5,164,287	-				-0.7
5,164,292	-				+0.8
5,164,292	-				-0.2
5,164,292	-				-0.5
5,164,297	-				-0.7
5,164,304	+				+0.2
5,164,306	+				-0.1
5,164,321	+				-0.9
5,164,337	-				+0.9
5,164,341	+				-0.6
5,164,341	+				-3.0
5,164,341	+				+0.5
5,164,346	+				-0.9
5,164,346	+				-1.9
5,164,346	+				-0.5
5,164,346	+				-0.5
5,164,346	+				-1.8
5,164,346	+				+0.7
5,164,346	+				-3.5
5,164,346	+				-2.4
5,164,346	+				-0.5
5,164,346	+				+1.2
5,164,346	+				-1.1
5,164,346	+				+0.3
5,164,346	+				-1.6
5,164,346	+				-0.1
5,164,349	-				-1.4
5,164,349	-				-1.8
5,164,349	-				+0.1
5,164,351	+				-0.7
5,164,354	-				-1.0
5,164,354	-				-0.9
5,164,354	-				-2.0
5,164,354	-				+1.3
5,164,354	-				+0.1
5,164,354	-				-1.9
5,164,354	-				-1.9
5,164,354	-				-1.5
5,164,354	-				-0.1
5,164,354	-				-0.1
5,164,354	-				-1.7
5,164,356	+				-0.0
5,164,357	+				-0.3
5,164,401	-				-0.1
5,164,406	+				-0.3
5,164,414	-				-0.4
5,164,414	-				-1.2
5,164,414	-				-1.1
5,164,457	+				-1.0
5,164,459	+				-1.4
5,164,465	-				-2.5
5,164,465	-				-0.3
5,164,495	+				-1.8
5,164,503	+				-1.6
5,164,544	+		GFF5173	0.13	+0.0
5,164,547	-		GFF5173	0.14	+0.1
5,164,549	+		GFF5173	0.14	-1.4
5,164,549	+		GFF5173	0.14	+0.3
5,164,549	+		GFF5173	0.14	-1.1
5,164,549	+		GFF5173	0.14	-0.6
5,164,549	+		GFF5173	0.14	+0.8
5,164,549	+		GFF5173	0.14	-0.6
5,164,549	+		GFF5173	0.14	+0.4
5,164,549	+		GFF5173	0.14	-0.2
5,164,549	+		GFF5173	0.14	+0.5
5,164,549	+		GFF5173	0.14	-0.1
5,164,549	+		GFF5173	0.14	+0.5
5,164,557	-		GFF5173	0.16	-0.2
5,164,557	-		GFF5173	0.16	-0.2
5,164,557	-		GFF5173	0.16	-0.1
5,164,557	-		GFF5173	0.16	-1.2
5,164,557	-		GFF5173	0.16	-1.3
5,164,557	-		GFF5173	0.16	+0.4
5,164,557	-		GFF5173	0.16	+0.9
5,164,557	-		GFF5173	0.16	-0.9
5,164,557	-		GFF5173	0.16	-1.9
5,164,557	-		GFF5173	0.16	-0.0
5,164,573	-		GFF5173	0.18	-0.2
5,164,587	+		GFF5173	0.21	+0.0
5,164,602	+		GFF5173	0.23	+0.5
5,164,626	+		GFF5173	0.27	+0.1
5,164,626	+		GFF5173	0.27	-0.3
5,164,626	+		GFF5173	0.27	+0.1
5,164,626	+		GFF5173	0.27	-0.9
5,164,634	-		GFF5173	0.29	-0.5
5,164,634	-		GFF5173	0.29	-0.8
5,164,634	-		GFF5173	0.29	-0.0
5,164,634	-		GFF5173	0.29	-1.2
5,164,638	+		GFF5173	0.29	+0.2
5,164,641	+		GFF5173	0.30	-1.0
5,164,649	-		GFF5173	0.31	+0.1
5,164,661	-		GFF5173	0.33	-0.8
5,164,663	+		GFF5173	0.34	-1.8
5,164,671	-		GFF5173	0.35	-0.6
5,164,671	-		GFF5173	0.35	-1.6
5,164,671	-		GFF5173	0.35	-0.3
5,164,678	+		GFF5173	0.36	-2.2
5,164,681	-		GFF5173	0.37	-2.3
5,164,708	+		GFF5173	0.41	+0.7
5,164,716	-		GFF5173	0.43	-0.8
5,164,718	+		GFF5173	0.43	-0.3
5,164,718	+		GFF5173	0.43	-0.2
5,164,718	+		GFF5173	0.43	-1.7
5,164,718	+		GFF5173	0.43	-0.7
5,164,718	+		GFF5173	0.43	+1.7
5,164,718	+		GFF5173	0.43	-0.9
5,164,718	+		GFF5173	0.43	-0.4
5,164,718	+		GFF5173	0.43	-0.7
5,164,718	+		GFF5173	0.43	-0.7
5,164,718	+		GFF5173	0.43	+0.5
5,164,718	+		GFF5173	0.43	+0.6
5,164,718	+		GFF5173	0.43	-0.2
5,164,718	+		GFF5173	0.43	-0.1
5,164,726	-		GFF5173	0.44	+1.2
5,164,726	-		GFF5173	0.44	-0.8
5,164,726	-		GFF5173	0.44	-0.5
5,164,726	-		GFF5173	0.44	+0.6
5,164,726	-		GFF5173	0.44	-1.4
5,164,726	-		GFF5173	0.44	-1.0
5,164,726	-		GFF5173	0.44	-0.2
5,164,726	-		GFF5173	0.44	-0.7
5,164,726	-		GFF5173	0.44	-0.5
5,164,726	-		GFF5173	0.44	+0.2
5,164,726	-		GFF5173	0.44	+0.1
5,164,726	-		GFF5173	0.44	-0.1
5,164,726	-		GFF5173	0.44	-1.2
5,164,726	-		GFF5173	0.44	+0.4
5,164,726	-		GFF5173	0.44	-0.5
5,164,763	-		GFF5173	0.51	-0.2
5,164,783	-		GFF5173	0.54	+1.1
5,164,789	+		GFF5173	0.55	-0.1
5,164,795	+		GFF5173	0.56	-3.3
5,164,822	+		GFF5173	0.61	-0.5
5,164,822	+		GFF5173	0.61	+1.2
5,164,822	+		GFF5173	0.61	-0.6
5,164,822	+		GFF5173	0.61	-0.9
5,164,822	+		GFF5173	0.61	-0.8
5,164,822	-		GFF5173	0.61	-0.6
5,164,830	-		GFF5173	0.62	+0.1
5,164,830	-		GFF5173	0.62	+0.4
5,164,830	-		GFF5173	0.62	-0.0
5,164,831	+		GFF5173	0.62	+0.6
5,164,839	-		GFF5173	0.64	-1.0
5,164,860	-		GFF5173	0.67	-1.4
5,164,866	+		GFF5173	0.68	-1.3
5,164,874	-		GFF5173	0.70	-0.3
5,164,897	-		GFF5173	0.73	-0.6
5,164,897	-		GFF5173	0.73	-0.9
5,164,901	-		GFF5173	0.74	-0.8
5,164,909	-		GFF5173	0.76	-1.2
5,164,909	-		GFF5173	0.76	-0.2
5,164,924	-		GFF5173	0.78	-1.7
5,164,938	-		GFF5173	0.80	-0.2
5,164,939	+		GFF5173	0.81	-0.5
5,164,939	+		GFF5173	0.81	+0.4
5,164,939	+		GFF5173	0.81	+0.0
5,164,944	+		GFF5173	0.81	-0.7
5,164,947	-		GFF5173	0.82	+0.3
5,164,951	+		GFF5173	0.83	-0.4
5,164,952	+		GFF5173	0.83	+0.1
5,164,957	+		GFF5173	0.84	+0.9
5,164,959	-		GFF5173	0.84	-3.2
5,164,960	-		GFF5173	0.84	-0.3
5,164,960	-		GFF5173	0.84	+0.6
5,164,980	-		GFF5173	0.88	-0.4
5,165,001	+				-0.1
5,165,007	-				-1.3
5,165,014	+				+0.9
5,165,014	+				+0.0
5,165,022	-				+0.1
5,165,022	-				-0.5
5,165,022	-				-0.9
5,165,030	-				-0.2
5,165,039	-				-1.6
5,165,089	+				+0.6
5,165,095	-				+1.1
5,165,120	+				+0.6
5,165,138	-				-0.4
5,165,163	-				-2.4
5,165,164	+				-1.4
5,165,180	+				+0.7
5,165,189	-				-0.7
5,165,220	+				-0.3
5,165,231	-				-0.4
5,165,242	-				+0.8
5,165,242	-				-0.2
5,165,250	-				-0.5
5,165,252	+				-0.4
5,165,283	+				-0.9
5,165,284	+				+1.4
5,165,288	+				-1.7
5,165,291	-				-2.2
5,165,291	-				-0.9
5,165,293	+				+1.0
5,165,293	+				-0.8
5,165,293	+				-0.7
5,165,293	+				+0.4
5,165,293	+				-0.8
5,165,293	+				-1.7
5,165,298	+				+0.8
5,165,301	-				-2.0
5,165,301	-				-0.7
5,165,301	-				+0.0
5,165,306	-		GFF5174	0.10	-1.4
5,165,306	-		GFF5174	0.10	-0.9
5,165,311	+		GFF5174	0.11	-1.0
5,165,319	-		GFF5174	0.12	+0.8
5,165,343	+		GFF5174	0.14	-0.6
5,165,357	-		GFF5174	0.16	+0.6
5,165,421	-		GFF5174	0.22	-0.7
5,165,423	+		GFF5174	0.23	+0.0
5,165,438	-		GFF5174	0.24	-1.3
5,165,438	-		GFF5174	0.24	-1.7
5,165,438	-		GFF5174	0.24	-0.8
5,165,443	-		GFF5174	0.25	+0.6
5,165,443	-		GFF5174	0.25	-0.5
5,165,443	-		GFF5174	0.25	+0.3
5,165,443	-		GFF5174	0.25	-2.3
5,165,465	+		GFF5174	0.27	-0.8
5,165,478	-		GFF5174	0.28	-1.7
5,165,509	+		GFF5174	0.32	-2.7
5,165,509	+		GFF5174	0.32	+0.6
5,165,517	-		GFF5174	0.32	-2.4
5,165,517	-		GFF5174	0.32	-0.3
5,165,517	-		GFF5174	0.32	+1.3
5,165,517	-		GFF5174	0.32	-1.3
5,165,517	-		GFF5174	0.32	-0.5
5,165,528	+		GFF5174	0.34	-0.7
5,165,528	+		GFF5174	0.34	-1.0
5,165,571	+		GFF5174	0.38	-1.4
5,165,579	-		GFF5174	0.39	+0.2
5,165,584	+		GFF5174	0.40	-2.3
5,165,584	+		GFF5174	0.40	-0.2
5,165,592	-		GFF5174	0.40	-0.3
5,165,592	-		GFF5174	0.40	-0.2
5,165,592	-		GFF5174	0.40	-0.6
5,165,592	-		GFF5174	0.40	-0.4
5,165,602	+		GFF5174	0.41	+0.9
5,165,607	+		GFF5174	0.42	-1.8
5,165,610	-		GFF5174	0.42	+0.1
5,165,611	+		GFF5174	0.42	+0.1
5,165,612	+		GFF5174	0.43	+0.8
5,165,612	+		GFF5174	0.43	-0.4
5,165,620	-		GFF5174	0.43	-0.8
5,165,620	-		GFF5174	0.43	+0.1
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