Strain Fitness in Sphingobium sp. HT1-2 around GFF5172

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,161,973	+		GFF5170	0.50	+0.8
5,161,991	-		GFF5170	0.52	-1.0
5,161,993	+		GFF5170	0.52	-0.6
5,161,993	+		GFF5170	0.52	+0.3
5,162,008	+		GFF5170	0.54	-0.4
5,162,008	+		GFF5170	0.54	-0.9
5,162,008	+		GFF5170	0.54	+0.7
5,162,008	+		GFF5170	0.54	-0.7
5,162,008	+		GFF5170	0.54	+0.8
5,162,008	+		GFF5170	0.54	+0.0
5,162,011	-		GFF5170	0.54	+0.9
5,162,016	-		GFF5170	0.55	-0.0
5,162,016	-		GFF5170	0.55	+0.1
5,162,021	-		GFF5170	0.55	+0.7
5,162,047	-		GFF5170	0.58	+1.5
5,162,047	-		GFF5170	0.58	-1.6
5,162,047	-		GFF5170	0.58	-0.2
5,162,049	+		GFF5170	0.58	-0.2
5,162,071	+		GFF5170	0.61	-0.4
5,162,078	+		GFF5170	0.61	-0.5
5,162,086	-		GFF5170	0.62	-0.0
5,162,086	-		GFF5170	0.62	-0.2
5,162,086	-		GFF5170	0.62	+1.0
5,162,086	-		GFF5170	0.62	-2.3
5,162,086	-		GFF5170	0.62	+0.0
5,162,110	-		GFF5170	0.65	-0.7
5,162,155	-		GFF5170	0.69	-1.4
5,162,170	-		GFF5170	0.71	-0.6
5,162,172	+		GFF5170	0.71	+0.3
5,162,172	+		GFF5170	0.71	-0.6
5,162,172	+		GFF5170	0.71	-1.2
5,162,172	+		GFF5170	0.71	+0.4
5,162,197	+		GFF5170	0.74	-0.7
5,162,205	-		GFF5170	0.75	-0.9
5,162,206	+		GFF5170	0.75	-0.0
5,162,206	+		GFF5170	0.75	+0.1
5,162,211	+		GFF5170	0.75	-2.4
5,162,211	+		GFF5170	0.75	-0.4
5,162,214	-		GFF5170	0.75	+0.2
5,162,227	-		GFF5170	0.77	-0.3
5,162,251	-		GFF5170	0.79	-0.8
5,162,310	-		GFF5170	0.85	+0.3
5,162,331	-		GFF5170	0.88	-0.9
5,162,350	-		GFF5170	0.90	-1.8
5,162,416	+				+0.2
5,162,417	-				-2.6
5,162,417	-				-0.8
5,162,460	+				-0.1
5,162,462	+				-1.9
5,162,462	+				+0.0
5,162,470	-				-1.0
5,162,472	+				-1.1
5,162,477	+				-0.5
5,162,488	+				-1.6
5,162,496	-		GFF5171	0.10	-2.7
5,162,498	+		GFF5171	0.11	-0.4
5,162,498	+		GFF5171	0.11	-0.5
5,162,498	+		GFF5171	0.11	-1.7
5,162,498	+		GFF5171	0.11	-1.8
5,162,498	+		GFF5171	0.11	-0.6
5,162,498	+		GFF5171	0.11	+0.2
5,162,504	+		GFF5171	0.12	+0.5
5,162,505	+		GFF5171	0.12	-1.9
5,162,506	-		GFF5171	0.12	-0.9
5,162,506	-		GFF5171	0.12	+0.9
5,162,506	-		GFF5171	0.12	+0.5
5,162,506	-		GFF5171	0.12	-2.3
5,162,506	-		GFF5171	0.12	-0.9
5,162,512	-		GFF5171	0.13	+0.9
5,162,512	-		GFF5171	0.13	+0.4
5,162,512	-		GFF5171	0.13	-1.2
5,162,512	-		GFF5171	0.13	+0.1
5,162,512	-		GFF5171	0.13	-0.8
5,162,555	+		GFF5171	0.22	-0.1
5,162,562	+		GFF5171	0.23	+0.0
5,162,563	+		GFF5171	0.23	+0.7
5,162,563	-		GFF5171	0.23	-0.7
5,162,570	-		GFF5171	0.25	+0.2
5,162,571	-		GFF5171	0.25	-0.1
5,162,571	-		GFF5171	0.25	-1.3
5,162,573	-		GFF5171	0.25	-0.2
5,162,585	+		GFF5171	0.28	-0.4
5,162,585	+		GFF5171	0.28	-0.2
5,162,585	+		GFF5171	0.28	+0.2
5,162,585	+		GFF5171	0.28	-1.7
5,162,585	+		GFF5171	0.28	-0.4
5,162,590	+		GFF5171	0.29	-0.2
5,162,590	+		GFF5171	0.29	-0.1
5,162,591	-		GFF5171	0.29	+0.2
5,162,593	-		GFF5171	0.29	-0.8
5,162,593	-		GFF5171	0.29	+0.0
5,162,593	-		GFF5171	0.29	-1.5
5,162,593	-		GFF5171	0.29	+0.2
5,162,598	-		GFF5171	0.30	-2.6
5,162,598	-		GFF5171	0.30	-0.8
5,162,598	-		GFF5171	0.30	+0.2
5,162,605	-		GFF5171	0.32	-0.5
5,162,605	-		GFF5171	0.32	+0.7
5,162,607	+		GFF5171	0.32	+0.4
5,162,654	+		GFF5171	0.41	+1.2
5,162,655	+		GFF5171	0.42	-2.4
5,162,663	-		GFF5171	0.43	+0.2
5,162,663	-		GFF5171	0.43	-0.6
5,162,681	-		GFF5171	0.47	-0.5
5,162,690	+		GFF5171	0.49	-2.3
5,162,691	+		GFF5171	0.49	+1.2
5,162,692	+		GFF5171	0.49	+0.4
5,162,697	+		GFF5171	0.50	+0.0
5,162,697	-		GFF5171	0.50	+0.6
5,162,699	-		GFF5171	0.50	-0.8
5,162,699	-		GFF5171	0.50	-0.7
5,162,699	-		GFF5171	0.50	+0.2
5,162,703	+		GFF5171	0.51	-0.9
5,162,706	-		GFF5171	0.52	-2.2
5,162,706	-		GFF5171	0.52	-2.0
5,162,709	+		GFF5171	0.52	+0.2
5,162,709	-		GFF5171	0.52	-0.6
5,162,713	+		GFF5171	0.53	+0.6
5,162,722	+		GFF5171	0.55	+0.2
5,162,727	-		GFF5171	0.56	+0.1
5,162,728	+		GFF5171	0.56	+0.4
5,162,749	+		GFF5171	0.60	-1.9
5,162,864	-		GFF5171	0.83	-2.4
5,162,875	-		GFF5171	0.85	+0.1
5,162,889	+		GFF5171	0.88	-1.1
5,162,889	+		GFF5171	0.88	-0.4
5,162,927	+				-0.6
5,162,942	+				-2.1
5,162,942	+				-0.9
5,162,942	+				-0.8
5,162,942	+				+0.4
5,162,950	-				+0.4
5,162,950	-				-1.8
5,162,950	-				-0.1
5,162,950	-				-0.6
5,162,959	+				+0.2
5,162,967	-				-1.2
5,162,985	+				-0.5
5,162,985	+				-0.9
5,162,990	+				-0.0
5,163,000	+				-1.1
5,163,000	+				+0.8
5,163,000	+				+1.4
5,163,000	+				-0.4
5,163,000	+				-0.7
5,163,000	+				+1.0
5,163,000	+				-1.9
5,163,000	+				+0.8
5,163,000	+				+0.3
5,163,000	+				-0.9
5,163,005	+				-0.2
5,163,005	+				-0.1
5,163,005	+				+1.0
5,163,007	+				+1.4
5,163,007	+				+0.7
5,163,007	+				-0.7
5,163,007	+				+1.2
5,163,008	-				-0.6
5,163,008	-				+0.1
5,163,008	-				-0.9
5,163,008	-				+0.3
5,163,008	-				+0.6
5,163,008	-				-0.0
5,163,008	-				-2.0
5,163,008	-				+0.1
5,163,010	+				-1.6
5,163,013	-				+0.5
5,163,013	-				-1.8
5,163,015	-				-0.5
5,163,015	-				+0.1
5,163,015	-				-0.6
5,163,015	-				-0.4
5,163,045	+				-0.8
5,163,053	-				-0.3
5,163,061	+				-0.5
5,163,061	+				-1.6
5,163,062	-				-0.9
5,163,111	+		GFF5172	0.14	+0.6
5,163,127	-		GFF5172	0.15	-3.1
5,163,151	-		GFF5172	0.17	-0.3
5,163,172	+		GFF5172	0.19	+0.4
5,163,182	+		GFF5172	0.20	+0.6
5,163,205	+		GFF5172	0.22	+0.6
5,163,205	+		GFF5172	0.22	+0.7
5,163,205	+		GFF5172	0.22	-0.1
5,163,205	+		GFF5172	0.22	-1.1
5,163,205	+		GFF5172	0.22	-0.8
5,163,205	+		GFF5172	0.22	-0.9
5,163,213	-		GFF5172	0.22	+0.9
5,163,213	-		GFF5172	0.22	-0.2
5,163,213	-		GFF5172	0.22	-0.5
5,163,215	+		GFF5172	0.22	+0.0
5,163,215	+		GFF5172	0.22	+0.2
5,163,215	+		GFF5172	0.22	-1.3
5,163,215	+		GFF5172	0.22	-0.2
5,163,223	-		GFF5172	0.23	-0.3
5,163,223	-		GFF5172	0.23	-1.2
5,163,223	-		GFF5172	0.23	-0.7
5,163,223	-		GFF5172	0.23	-0.6
5,163,223	-		GFF5172	0.23	-0.9
5,163,223	-		GFF5172	0.23	-2.6
5,163,235	+		GFF5172	0.24	-0.1
5,163,243	-		GFF5172	0.25	-0.6
5,163,244	+		GFF5172	0.25	-0.2
5,163,244	-		GFF5172	0.25	-1.7
5,163,245	+		GFF5172	0.25	-1.7
5,163,245	+		GFF5172	0.25	-0.6
5,163,268	+		GFF5172	0.27	+0.3
5,163,268	+		GFF5172	0.27	+0.3
5,163,268	+		GFF5172	0.27	-0.9
5,163,268	+		GFF5172	0.27	+1.0
5,163,268	+		GFF5172	0.27	-0.4
5,163,268	+		GFF5172	0.27	+0.1
5,163,268	+		GFF5172	0.27	-1.3
5,163,273	+		GFF5172	0.27	-1.4
5,163,276	-		GFF5172	0.28	+0.6
5,163,276	-		GFF5172	0.28	-0.7
5,163,276	-		GFF5172	0.28	-0.1
5,163,285	+		GFF5172	0.28	-0.4
5,163,285	+		GFF5172	0.28	+0.2
5,163,285	+		GFF5172	0.28	-0.4
5,163,285	+		GFF5172	0.28	-1.3
5,163,293	-		GFF5172	0.29	-0.1
5,163,312	+		GFF5172	0.31	-1.3
5,163,312	+		GFF5172	0.31	-1.7
5,163,337	+		GFF5172	0.33	-0.7
5,163,345	-		GFF5172	0.34	-1.4
5,163,354	+		GFF5172	0.34	-0.8
5,163,360	+		GFF5172	0.35	-0.8
5,163,366	+		GFF5172	0.35	-3.2
5,163,374	-		GFF5172	0.36	-2.1
5,163,374	-		GFF5172	0.36	-0.3
5,163,395	-		GFF5172	0.38	-0.7
5,163,458	-		GFF5172	0.43	+0.1
5,163,467	+		GFF5172	0.44	+0.9
5,163,476	+		GFF5172	0.45	-0.8
5,163,476	+		GFF5172	0.45	-0.8
5,163,476	+		GFF5172	0.45	-0.9
5,163,476	+		GFF5172	0.45	-0.9
5,163,476	+		GFF5172	0.45	-0.2
5,163,476	+		GFF5172	0.45	-0.5
5,163,476	+		GFF5172	0.45	-0.4
5,163,476	+		GFF5172	0.45	+0.5
5,163,476	+		GFF5172	0.45	+0.1
5,163,476	+		GFF5172	0.45	+0.2
5,163,476	+		GFF5172	0.45	+1.1
5,163,481	+		GFF5172	0.45	-2.3
5,163,481	+		GFF5172	0.45	+0.1
5,163,484	-		GFF5172	0.45	-0.4
5,163,484	-		GFF5172	0.45	-0.1
5,163,484	-		GFF5172	0.45	+1.1
5,163,484	-		GFF5172	0.45	-0.9
5,163,484	-		GFF5172	0.45	-2.0
5,163,484	-		GFF5172	0.45	+1.1
5,163,484	-		GFF5172	0.45	+0.9
5,163,484	-		GFF5172	0.45	-0.5
5,163,484	-		GFF5172	0.45	-2.3
5,163,489	-		GFF5172	0.46	+0.4
5,163,489	-		GFF5172	0.46	-1.2
5,163,496	+		GFF5172	0.46	-0.4
5,163,499	-		GFF5172	0.47	-0.9
5,163,506	-		GFF5172	0.47	+1.0
5,163,511	+		GFF5172	0.48	-0.1
5,163,537	+		GFF5172	0.50	-0.6
5,163,537	+		GFF5172	0.50	-0.9
5,163,537	+		GFF5172	0.50	-1.3
5,163,545	-		GFF5172	0.51	-0.3
5,163,545	-		GFF5172	0.51	-1.5
5,163,545	-		GFF5172	0.51	+0.2
5,163,590	+		GFF5172	0.54	-2.2
5,163,590	+		GFF5172	0.54	+0.3
5,163,593	+		GFF5172	0.55	-0.3
5,163,608	+		GFF5172	0.56	-0.9
5,163,628	+		GFF5172	0.58	+0.3
5,163,628	+		GFF5172	0.58	+0.6
5,163,636	+		GFF5172	0.58	+1.0
5,163,638	+		GFF5172	0.58	+0.3
5,163,642	-		GFF5172	0.59	-0.8
5,163,644	+		GFF5172	0.59	-0.6
5,163,646	-		GFF5172	0.59	-2.3
5,163,654	-		GFF5172	0.60	-1.0
5,163,679	+		GFF5172	0.62	-0.8
5,163,679	+		GFF5172	0.62	-0.3
5,163,686	+		GFF5172	0.63	-0.3
5,163,697	-		GFF5172	0.64	-1.0
5,163,697	-		GFF5172	0.64	+0.1
5,163,697	-		GFF5172	0.64	+0.1
5,163,699	+		GFF5172	0.64	+0.3
5,163,699	+		GFF5172	0.64	+0.9
5,163,699	+		GFF5172	0.64	-0.3
5,163,699	+		GFF5172	0.64	-0.0
5,163,699	+		GFF5172	0.64	-2.9
5,163,699	+		GFF5172	0.64	+0.0
5,163,699	+		GFF5172	0.64	-0.3
5,163,699	+		GFF5172	0.64	-3.6
5,163,699	+		GFF5172	0.64	+0.0
5,163,707	-		GFF5172	0.64	+0.7
5,163,707	-		GFF5172	0.64	-0.4
5,163,707	-		GFF5172	0.64	+0.2
5,163,707	-		GFF5172	0.64	+1.0
5,163,707	-		GFF5172	0.64	-2.1
5,163,707	-		GFF5172	0.64	-0.9
5,163,707	-		GFF5172	0.64	-0.0
5,163,707	-		GFF5172	0.64	-1.6
5,163,707	-		GFF5172	0.64	-1.8
5,163,707	-		GFF5172	0.64	-2.3
5,163,707	-		GFF5172	0.64	-0.8
5,163,709	+		GFF5172	0.65	-1.2
5,163,709	+		GFF5172	0.65	-1.6
5,163,709	+		GFF5172	0.65	-1.1
5,163,714	+		GFF5172	0.65	-1.1
5,163,717	-		GFF5172	0.65	+0.1
5,163,717	-		GFF5172	0.65	-0.4
5,163,717	-		GFF5172	0.65	+1.4
5,163,724	+		GFF5172	0.66	-1.9
5,163,724	+		GFF5172	0.66	-1.0
5,163,724	+		GFF5172	0.66	+1.4
5,163,724	-		GFF5172	0.66	-0.8
5,163,727	-		GFF5172	0.66	+0.3
5,163,729	+		GFF5172	0.66	-1.1
5,163,729	+		GFF5172	0.66	-0.6
5,163,737	+		GFF5172	0.67	-1.7
5,163,737	-		GFF5172	0.67	-2.0
5,163,745	-		GFF5172	0.68	+0.0
5,163,805	-		GFF5172	0.73	-0.2
5,163,818	-		GFF5172	0.74	-2.0
5,163,819	-		GFF5172	0.74	-0.5
5,163,823	-		GFF5172	0.74	-1.8
5,163,824	+		GFF5172	0.74	-1.4
5,163,824	-		GFF5172	0.74	-0.5
5,163,831	+		GFF5172	0.75	-1.7
5,163,831	+		GFF5172	0.75	+0.2
5,163,838	+		GFF5172	0.76	-2.4
5,163,842	+		GFF5172	0.76	-1.5
5,163,857	-		GFF5172	0.77	+1.0
5,163,866	+		GFF5172	0.78	-0.6
5,163,866	+		GFF5172	0.78	-0.9
5,163,958	+		GFF5172	0.86	-1.2
5,163,966	-		GFF5172	0.86	+0.3
5,163,966	-		GFF5172	0.86	+0.1
5,164,018	+				+0.4
5,164,022	+				+0.4
5,164,030	-				+0.4
5,164,038	+				-0.8
5,164,038	+				+0.3
5,164,066	+				-2.1
5,164,084	-				-0.1
5,164,087	+				-0.3
5,164,102	+				+0.6
5,164,104	+				-2.5
5,164,104	+				+0.7
5,164,109	+				+0.8
5,164,112	-				-0.1
5,164,112	-				-0.4
5,164,117	-				+1.6
5,164,119	+				-1.1
5,164,119	+				-0.4
5,164,127	-				+0.3
5,164,146	+				-0.7
5,164,147	+				+0.1
5,164,155	-				-0.5
5,164,250	-				+0.9
5,164,270	-				-1.8
5,164,284	+				+1.9
5,164,285	-				-1.0
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5,164,341	+				-3.0
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5,165,014	+				+0.0
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5,165,022	-				-0.5
5,165,022	-				-0.9
5,165,030	-				-0.2
5,165,039	-				-1.6
5,165,089	+				+0.6
5,165,095	-				+1.1
5,165,120	+				+0.6