Strain Fitness in Sphingobium sp. HT1-2 around GFF5154

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,145,099	+		GFF5152	0.31	-1.7
5,145,099	-		GFF5152	0.31	+1.2
5,145,101	+		GFF5152	0.32	+0.2
5,145,101	+		GFF5152	0.32	+0.3
5,145,101	+		GFF5152	0.32	-0.9
5,145,101	+		GFF5152	0.32	-1.4
5,145,101	+		GFF5152	0.32	+0.3
5,145,101	+		GFF5152	0.32	-0.6
5,145,109	-		GFF5152	0.34	-1.9
5,145,109	-		GFF5152	0.34	+0.8
5,145,109	-		GFF5152	0.34	-2.0
5,145,109	-		GFF5152	0.34	+0.2
5,145,109	-		GFF5152	0.34	+0.3
5,145,156	+		GFF5152	0.47	-0.5
5,145,167	+		GFF5152	0.50	-1.9
5,145,173	+		GFF5152	0.51	-0.1
5,145,199	-		GFF5152	0.58	-0.5
5,145,205	-		GFF5152	0.60	-0.7
5,145,212	+		GFF5152	0.62	+0.4
5,145,220	-		GFF5152	0.64	-2.1
5,145,244	+		GFF5152	0.70	-1.3
5,145,244	+		GFF5152	0.70	-0.6
5,145,244	+		GFF5152	0.70	-1.8
5,145,244	+		GFF5152	0.70	+0.7
5,145,244	+		GFF5152	0.70	-1.0
5,145,244	+		GFF5152	0.70	-0.7
5,145,244	+		GFF5152	0.70	-1.2
5,145,244	+		GFF5152	0.70	+1.1
5,145,244	+		GFF5152	0.70	-1.7
5,145,244	+		GFF5152	0.70	-0.9
5,145,244	+		GFF5152	0.70	-0.1
5,145,244	+		GFF5152	0.70	-2.0
5,145,244	+		GFF5152	0.70	-2.7
5,145,244	+		GFF5152	0.70	-1.0
5,145,244	+		GFF5152	0.70	+0.2
5,145,244	+		GFF5152	0.70	-1.8
5,145,244	+		GFF5152	0.70	-0.7
5,145,252	-		GFF5152	0.73	+0.8
5,145,252	-		GFF5152	0.73	-1.1
5,145,252	-		GFF5152	0.73	+1.4
5,145,252	-		GFF5152	0.73	-2.1
5,145,252	-		GFF5152	0.73	+1.0
5,145,252	-		GFF5152	0.73	-0.2
5,145,252	-		GFF5152	0.73	-0.5
5,145,252	-		GFF5152	0.73	-0.4
5,145,252	-		GFF5152	0.73	-0.4
5,145,252	-		GFF5152	0.73	-0.9
5,145,252	-		GFF5152	0.73	-1.1
5,145,254	+		GFF5152	0.73	-2.0
5,145,257	-		GFF5152	0.74	+0.0
5,145,268	+		GFF5152	0.77	-2.9
5,145,282	+		GFF5152	0.81	-1.9
5,145,308	-		GFF5152	0.88	-0.8
5,145,321	+				-0.8
5,145,325	+				-1.2
5,145,332	+				-1.4
5,145,344	+				-0.2
5,145,352	-				-1.4
5,145,352	-				+0.6
5,145,369	-				-0.7
5,145,371	+				-0.5
5,145,371	-				-1.2
5,145,379	-				-0.9
5,145,379	-				+0.9
5,145,379	-				-0.3
5,145,402	-				+0.7
5,145,403	+				-0.9
5,145,408	+				-1.0
5,145,421	+				-0.9
5,145,421	+				-1.8
5,145,426	+				-0.5
5,145,426	+				-1.7
5,145,426	+				-0.9
5,145,440	+				-1.1
5,145,442	+				-0.8
5,145,447	+				-0.8
5,145,448	-				+0.1
5,145,448	-				-1.6
5,145,468	+				-0.7
5,145,470	-				-0.7
5,145,470	-				+0.3
5,145,472	+				-1.3
5,145,488	+				-0.4
5,145,603	-		GFF5153	0.26	-1.0
5,145,620	-		GFF5153	0.29	-0.8
5,145,999	+				+1.0
5,146,014	+				+0.4
5,146,024	+				+0.7
5,146,035	+				+0.3
5,146,035	+				-1.5
5,146,035	+				-1.8
5,146,035	+				-0.3
5,146,035	+				-0.3
5,146,035	+				-0.6
5,146,041	-				-0.4
5,146,043	-				-1.0
5,146,043	-				-1.9
5,146,043	-				-0.7
5,146,043	-				+0.5
5,146,043	-				+0.7
5,146,043	-				+0.8
5,146,043	-				+0.5
5,146,043	-				-0.1
5,146,043	-				-1.4
5,146,043	-				-2.4
5,146,066	-				-0.0
5,146,072	+				+0.4
5,146,080	-				+0.5
5,146,109	-				-1.4
5,146,129	+				-1.6
5,146,155	+				-0.8
5,146,155	+				-1.9
5,146,155	+				-1.8
5,146,157	+				-0.2
5,146,160	+				-0.8
5,146,160	+				-0.8
5,146,160	+				+0.2
5,146,165	+				+0.0
5,146,172	+				-1.4
5,146,183	+				-1.6
5,146,183	+				-1.4
5,146,191	-				+0.4
5,146,217	+		GFF5154	0.12	-0.4
5,146,229	+		GFF5154	0.13	-0.2
5,146,240	+		GFF5154	0.14	-2.0
5,146,248	-		GFF5154	0.15	-0.2
5,146,254	-		GFF5154	0.15	-0.8
5,146,254	-		GFF5154	0.15	-0.7
5,146,254	-		GFF5154	0.15	-0.7
5,146,254	-		GFF5154	0.15	-1.6
5,146,254	-		GFF5154	0.15	-0.8
5,146,274	-		GFF5154	0.17	-0.7
5,146,295	-		GFF5154	0.19	-2.0
5,146,300	-		GFF5154	0.20	+0.6
5,146,311	-		GFF5154	0.21	+0.7
5,146,319	+		GFF5154	0.22	-2.2
5,146,325	-		GFF5154	0.22	-1.1
5,146,326	+		GFF5154	0.22	-0.0
5,146,326	-		GFF5154	0.22	+0.4
5,146,326	-		GFF5154	0.22	+0.4
5,146,327	-		GFF5154	0.22	-0.1
5,146,334	-		GFF5154	0.23	-1.1
5,146,344	+		GFF5154	0.24	-0.6
5,146,344	+		GFF5154	0.24	+1.6
5,146,344	+		GFF5154	0.24	-0.6
5,146,344	+		GFF5154	0.24	-1.1
5,146,344	+		GFF5154	0.24	+1.1
5,146,345	-		GFF5154	0.24	-0.5
5,146,349	+		GFF5154	0.25	-1.1
5,146,349	+		GFF5154	0.25	-0.4
5,146,349	+		GFF5154	0.25	-0.4
5,146,352	-		GFF5154	0.25	+0.1
5,146,352	-		GFF5154	0.25	-0.5
5,146,352	-		GFF5154	0.25	+0.4
5,146,352	-		GFF5154	0.25	+1.2
5,146,352	-		GFF5154	0.25	+0.1
5,146,352	-		GFF5154	0.25	+0.1
5,146,352	-		GFF5154	0.25	-0.8
5,146,352	-		GFF5154	0.25	-0.9
5,146,361	+		GFF5154	0.26	-1.9
5,146,369	-		GFF5154	0.26	-0.8
5,146,369	-		GFF5154	0.26	-0.4
5,146,369	-		GFF5154	0.26	+0.1
5,146,385	+		GFF5154	0.28	+1.0
5,146,385	+		GFF5154	0.28	+0.2
5,146,385	+		GFF5154	0.28	-1.0
5,146,386	-		GFF5154	0.28	+0.2
5,146,393	-		GFF5154	0.29	-0.3
5,146,414	+		GFF5154	0.31	+0.1
5,146,423	+		GFF5154	0.32	+0.2
5,146,431	-		GFF5154	0.32	-1.3
5,146,431	-		GFF5154	0.32	-1.6
5,146,431	-		GFF5154	0.32	-1.8
5,146,471	+		GFF5154	0.36	-0.2
5,146,472	-		GFF5154	0.36	+0.8
5,146,492	-		GFF5154	0.38	-1.0
5,146,492	-		GFF5154	0.38	+0.0
5,146,508	-		GFF5154	0.40	-1.0
5,146,512	+		GFF5154	0.40	-0.3
5,146,512	+		GFF5154	0.40	-1.9
5,146,542	-		GFF5154	0.43	+0.6
5,146,542	-		GFF5154	0.43	-0.2
5,146,542	-		GFF5154	0.43	-0.6
5,146,555	+		GFF5154	0.44	-0.1
5,146,557	+		GFF5154	0.45	+0.1
5,146,557	+		GFF5154	0.45	-0.3
5,146,557	+		GFF5154	0.45	+0.2
5,146,563	+		GFF5154	0.45	+1.6
5,146,563	+		GFF5154	0.45	-2.6
5,146,565	-		GFF5154	0.45	-2.2
5,146,565	-		GFF5154	0.45	+0.2
5,146,565	-		GFF5154	0.45	-1.2
5,146,565	-		GFF5154	0.45	-0.6
5,146,565	-		GFF5154	0.45	-0.6
5,146,573	+		GFF5154	0.46	-1.2
5,146,573	+		GFF5154	0.46	+0.4
5,146,573	+		GFF5154	0.46	+0.1
5,146,573	+		GFF5154	0.46	-0.1
5,146,578	+		GFF5154	0.47	-1.2
5,146,581	-		GFF5154	0.47	-1.2
5,146,581	-		GFF5154	0.47	-1.5
5,146,581	-		GFF5154	0.47	+0.2
5,146,581	-		GFF5154	0.47	-0.3
5,146,584	+		GFF5154	0.47	-0.7
5,146,584	+		GFF5154	0.47	-2.6
5,146,618	-		GFF5154	0.50	-1.9
5,146,640	+		GFF5154	0.53	-3.5
5,146,640	+		GFF5154	0.53	-1.2
5,146,640	+		GFF5154	0.53	+0.2
5,146,640	+		GFF5154	0.53	-0.1
5,146,640	+		GFF5154	0.53	+0.3
5,146,640	+		GFF5154	0.53	+1.7
5,146,652	+		GFF5154	0.54	-0.3
5,146,680	-		GFF5154	0.56	-1.1
5,146,685	-		GFF5154	0.57	-0.3
5,146,696	+		GFF5154	0.58	-0.7
5,146,696	+		GFF5154	0.58	-0.8
5,146,704	+		GFF5154	0.59	+0.7
5,146,704	+		GFF5154	0.59	-0.1
5,146,709	+		GFF5154	0.59	-0.5
5,146,709	+		GFF5154	0.59	-0.6
5,146,709	+		GFF5154	0.59	+0.3
5,146,709	+		GFF5154	0.59	-0.8
5,146,724	+		GFF5154	0.61	+0.3
5,146,724	+		GFF5154	0.61	+1.0
5,146,724	+		GFF5154	0.61	+1.5
5,146,724	+		GFF5154	0.61	-0.8
5,146,724	+		GFF5154	0.61	-0.0
5,146,724	+		GFF5154	0.61	-1.0
5,146,726	-		GFF5154	0.61	-0.7
5,146,728	+		GFF5154	0.61	+0.7
5,146,732	-		GFF5154	0.61	-0.3
5,146,732	-		GFF5154	0.61	-0.7
5,146,732	-		GFF5154	0.61	-0.6
5,146,732	-		GFF5154	0.61	-0.8
5,146,732	-		GFF5154	0.61	-1.0
5,146,732	-		GFF5154	0.61	+0.2
5,146,732	-		GFF5154	0.61	-0.5
5,146,733	+		GFF5154	0.62	-2.4
5,146,736	-		GFF5154	0.62	-0.5
5,146,736	-		GFF5154	0.62	+1.4
5,146,763	-		GFF5154	0.64	+0.4
5,146,769	-		GFF5154	0.65	-3.1
5,146,770	-		GFF5154	0.65	-3.5
5,146,773	-		GFF5154	0.65	-0.9
5,146,826	-		GFF5154	0.71	+0.8
5,146,838	+		GFF5154	0.72	-1.3
5,146,849	+		GFF5154	0.73	-0.2
5,146,849	+		GFF5154	0.73	-2.0
5,146,849	+		GFF5154	0.73	-2.0
5,146,849	-		GFF5154	0.73	-0.2
5,146,863	+		GFF5154	0.74	-2.0
5,146,887	+		GFF5154	0.76	-2.6
5,146,897	+		GFF5154	0.77	+0.3
5,146,897	+		GFF5154	0.77	+0.7
5,146,897	+		GFF5154	0.77	+1.1
5,146,897	+		GFF5154	0.77	-1.5
5,146,897	+		GFF5154	0.77	+0.4
5,146,897	+		GFF5154	0.77	-0.2
5,146,897	+		GFF5154	0.77	-2.1
5,146,900	-		GFF5154	0.78	-2.2
5,146,905	-		GFF5154	0.78	-1.1
5,146,905	-		GFF5154	0.78	-0.2
5,146,905	-		GFF5154	0.78	+0.1
5,146,905	-		GFF5154	0.78	-0.2
5,146,905	-		GFF5154	0.78	+0.6
5,146,905	-		GFF5154	0.78	+0.2
5,146,905	-		GFF5154	0.78	+0.2
5,146,905	-		GFF5154	0.78	-0.5
5,146,905	-		GFF5154	0.78	+0.1
5,146,905	-		GFF5154	0.78	-0.6
5,146,905	-		GFF5154	0.78	-0.1
5,146,905	-		GFF5154	0.78	-1.0
5,146,905	-		GFF5154	0.78	-1.7
5,146,912	-		GFF5154	0.79	+0.5
5,146,928	+		GFF5154	0.80	-0.0
5,146,928	+		GFF5154	0.80	+0.3
5,146,933	+		GFF5154	0.81	-0.2
5,146,933	+		GFF5154	0.81	-0.4
5,146,933	+		GFF5154	0.81	-0.3
5,146,933	+		GFF5154	0.81	+0.5
5,146,933	+		GFF5154	0.81	-2.4
5,146,933	+		GFF5154	0.81	-1.6
5,146,933	+		GFF5154	0.81	-0.5
5,146,938	+		GFF5154	0.81	-0.3
5,146,938	+		GFF5154	0.81	+0.3
5,146,938	+		GFF5154	0.81	-0.4
5,146,938	+		GFF5154	0.81	+0.0
5,146,941	-		GFF5154	0.82	-0.3
5,146,941	-		GFF5154	0.82	-0.7
5,146,941	-		GFF5154	0.82	+0.8
5,146,941	-		GFF5154	0.82	-0.8
5,146,941	-		GFF5154	0.82	+0.4
5,146,941	-		GFF5154	0.82	-0.0
5,146,943	+		GFF5154	0.82	+0.0
5,146,943	+		GFF5154	0.82	-0.5
5,146,943	+		GFF5154	0.82	-0.7
5,146,943	+		GFF5154	0.82	+0.4
5,146,945	+		GFF5154	0.82	+0.2
5,146,946	-		GFF5154	0.82	+0.2
5,146,951	-		GFF5154	0.83	-2.5
5,146,951	-		GFF5154	0.83	+1.1
5,146,951	-		GFF5154	0.83	-0.6
5,146,951	-		GFF5154	0.83	-0.1
5,146,951	-		GFF5154	0.83	-0.9
5,146,953	-		GFF5154	0.83	+0.2
5,146,957	+		GFF5154	0.83	+0.0
5,146,974	-		GFF5154	0.85	-0.8
5,146,976	+		GFF5154	0.85	-0.4
5,146,976	+		GFF5154	0.85	+0.8
5,147,002	+		GFF5154	0.87	-1.2
5,147,002	+		GFF5154	0.87	-0.5
5,147,010	+		GFF5154	0.88	+1.1
5,147,010	+		GFF5154	0.88	-0.5
5,147,010	+		GFF5154	0.88	-1.0
5,147,010	+		GFF5154	0.88	-1.1
5,147,012	+		GFF5154	0.88	-0.5
5,147,018	-		GFF5154	0.89	-0.6
5,147,050	-				-0.8
5,147,051	-				-1.3
5,147,057	+				+0.3
5,147,060	-				-0.8
5,147,062	+				+1.2
5,147,065	-				-1.8
5,147,067	+				+0.1
5,147,090	-				-0.1
5,147,096	-				-0.4
5,147,101	+				+0.2
5,147,104	-				+0.2
5,147,125	+				+0.4
5,147,127	+				+0.2
5,147,135	-				-2.1
5,147,144	+				+0.4
5,147,161	-				-0.1
5,147,164	+				+0.2
5,147,170	-				-0.0
5,147,190	+				+0.3
5,147,198	-				-0.8
5,147,198	-				-0.6
5,147,198	-				-0.4
5,147,203	-				-0.3
5,147,203	-				-0.1
5,147,203	-				-1.1
5,147,208	-				+0.4
5,147,208	-				-3.3
5,147,208	-				-2.1
5,147,220	-				+0.3
5,147,220	-				-0.1
5,147,220	-				-1.6
5,147,230	+				-0.8
5,147,238	-				+0.0
5,147,279	+				+0.7
5,147,279	+				+0.9
5,147,279	+				-2.1
5,147,279	+				+0.2
5,147,279	+				-0.9
5,147,279	+				-0.4
5,147,280	+				-1.3
5,147,280	+				-0.5
5,147,282	-				+0.1
5,147,282	-				-1.5
5,147,284	+				+0.4
5,147,284	+				-0.5
5,147,286	+				-0.6
5,147,294	+				-0.8
5,147,306	+				-1.4
5,147,316	+				-0.8
5,147,316	+				+0.7
5,147,334	-				-2.6
5,147,347	+				-1.2
5,147,354	+				+0.4
5,147,354	+				-0.3
5,147,362	-				-0.7
5,147,362	-				-1.3
5,147,362	-				-0.8
5,147,382	+				+0.7
5,147,382	+				+0.0
5,147,382	+				-0.9
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