Strain Fitness in Sphingobium sp. HT1-2 around GFF514

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF513 and GFF514 are separated by 101 nucleotidesGFF514 and GFF515 are separated by 106 nucleotides GFF513 - hypothetical protein, at 510,307 to 511,488 GFF513 GFF514 - hypothetical protein, at 511,590 to 511,760 GFF514 GFF515 - GTP-binding protein TypA/BipA, at 511,867 to 513,684 GFF515 Position (kb) 511 512Strain fitness (log2 ratio) -3 -2 -1 0 1at 510.602 kb on + strand, within GFF513at 510.613 kb on + strand, within GFF513at 510.613 kb on + strand, within GFF513at 510.615 kb on - strand, within GFF513at 510.621 kb on - strand, within GFF513at 510.621 kb on - strand, within GFF513at 510.621 kb on - strand, within GFF513at 510.642 kb on + strand, within GFF513at 510.642 kb on + strand, within GFF513at 510.655 kb on - strand, within GFF513at 510.655 kb on - strand, within GFF513at 510.660 kb on + strand, within GFF513at 510.669 kb on - strand, within GFF513at 510.721 kb on - strand, within GFF513at 510.723 kb on - strand, within GFF513at 510.763 kb on + strand, within GFF513at 510.764 kb on - strand, within GFF513at 510.768 kb on + strand, within GFF513at 510.768 kb on + strand, within GFF513at 510.768 kb on + strand, within GFF513at 510.776 kb on - strand, within GFF513at 510.776 kb on - strand, within GFF513at 510.776 kb on - strand, within GFF513at 510.790 kb on + strand, within GFF513at 510.792 kb on - strand, within GFF513at 510.792 kb on - strand, within GFF513at 510.792 kb on - strand, within GFF513at 510.802 kb on - strand, within GFF513at 510.807 kb on + strand, within GFF513at 510.845 kb on + strand, within GFF513at 510.860 kb on + strand, within GFF513at 510.866 kb on + strand, within GFF513at 510.874 kb on - strand, within GFF513at 510.874 kb on - strand, within GFF513at 510.879 kb on - strand, within GFF513at 510.911 kb on + strand, within GFF513at 510.911 kb on + strand, within GFF513at 510.911 kb on + strand, within GFF513at 510.913 kb on - strand, within GFF513at 510.919 kb on - strand, within GFF513at 510.948 kb on + strand, within GFF513at 510.948 kb on + strand, within GFF513at 510.948 kb on + strand, within GFF513at 510.948 kb on + strand, within GFF513at 510.951 kb on - strand, within GFF513at 510.956 kb on - strand, within GFF513at 510.962 kb on - strand, within GFF513at 510.986 kb on - strand, within GFF513at 510.994 kb on + strand, within GFF513at 510.994 kb on + strand, within GFF513at 510.995 kb on + strand, within GFF513at 510.995 kb on + strand, within GFF513at 510.995 kb on + strand, within GFF513at 511.002 kb on - strand, within GFF513at 511.002 kb on - strand, within GFF513at 511.003 kb on - strand, within GFF513at 511.016 kb on - strand, within GFF513at 511.038 kb on + strand, within GFF513at 511.038 kb on + strand, within GFF513at 511.038 kb on + strand, within GFF513at 511.038 kb on + strand, within GFF513at 511.046 kb on - strand, within GFF513at 511.046 kb on - strand, within GFF513at 511.046 kb on - strand, within GFF513at 511.088 kb on + strand, within GFF513at 511.103 kb on + strand, within GFF513at 511.114 kb on + strand, within GFF513at 511.114 kb on + strand, within GFF513at 511.117 kb on - strand, within GFF513at 511.117 kb on - strand, within GFF513at 511.119 kb on + strand, within GFF513at 511.119 kb on + strand, within GFF513at 511.122 kb on - strand, within GFF513at 511.122 kb on - strand, within GFF513at 511.122 kb on - strand, within GFF513at 511.126 kb on + strand, within GFF513at 511.132 kb on - strand, within GFF513at 511.148 kb on + strand, within GFF513at 511.148 kb on + strand, within GFF513at 511.148 kb on + strand, within GFF513at 511.156 kb on - strand, within GFF513at 511.156 kb on - strand, within GFF513at 511.182 kb on + strand, within GFF513at 511.182 kb on + strand, within GFF513at 511.182 kb on + strand, within GFF513at 511.192 kb on - strand, within GFF513at 511.205 kb on + strand, within GFF513at 511.205 kb on + strand, within GFF513at 511.213 kb on - strand, within GFF513at 511.213 kb on - strand, within GFF513at 511.230 kb on - strand, within GFF513at 511.232 kb on - strand, within GFF513at 511.232 kb on - strand, within GFF513at 511.236 kb on + strand, within GFF513at 511.259 kb on + strand, within GFF513at 511.260 kb on - strand, within GFF513at 511.262 kb on - strand, within GFF513at 511.268 kb on - strand, within GFF513at 511.300 kb on + strand, within GFF513at 511.300 kb on + strand, within GFF513at 511.300 kb on + strand, within GFF513at 511.300 kb on + strand, within GFF513at 511.307 kb on - strand, within GFF513at 511.308 kb on - strand, within GFF513at 511.308 kb on - strand, within GFF513at 511.314 kb on + strand, within GFF513at 511.318 kb on - strand, within GFF513at 511.365 kb on + strand, within GFF513at 511.372 kb on + strandat 511.379 kb on + strandat 511.380 kb on + strandat 511.380 kb on - strandat 511.389 kb on + strandat 511.392 kb on - strandat 511.398 kb on - strandat 511.412 kb on + strandat 511.412 kb on + strandat 511.412 kb on + strandat 511.412 kb on + strandat 511.412 kb on + strandat 511.412 kb on + strandat 511.412 kb on + strandat 511.415 kb on - strandat 511.416 kb on + strandat 511.439 kb on + strandat 511.439 kb on + strandat 511.439 kb on + strandat 511.447 kb on - strandat 511.447 kb on - strandat 511.447 kb on - strandat 511.447 kb on - strandat 511.449 kb on + strandat 511.449 kb on + strandat 511.449 kb on + strandat 511.449 kb on + strandat 511.449 kb on + strandat 511.449 kb on + strandat 511.449 kb on + strandat 511.450 kb on + strandat 511.457 kb on - strandat 511.457 kb on - strandat 511.457 kb on - strandat 511.457 kb on - strandat 511.490 kb on + strandat 511.490 kb on - strandat 511.490 kb on - strandat 511.492 kb on + strandat 511.498 kb on - strandat 511.498 kb on - strandat 511.498 kb on - strandat 511.498 kb on - strandat 511.511 kb on + strandat 511.511 kb on + strandat 511.513 kb on + strandat 511.519 kb on - strandat 511.541 kb on - strandat 511.549 kb on - strandat 511.549 kb on - strandat 511.549 kb on - strandat 511.549 kb on - strandat 511.549 kb on - strandat 511.561 kb on + strandat 511.561 kb on + strandat 511.564 kb on - strandat 511.569 kb on - strandat 511.596 kb on - strandat 511.614 kb on + strand, within GFF514at 511.621 kb on + strand, within GFF514at 511.630 kb on + strand, within GFF514at 511.630 kb on + strand, within GFF514at 511.630 kb on + strand, within GFF514at 511.630 kb on + strand, within GFF514at 511.638 kb on - strand, within GFF514at 511.638 kb on - strand, within GFF514at 511.638 kb on - strand, within GFF514at 511.638 kb on - strand, within GFF514at 511.638 kb on - strand, within GFF514at 511.638 kb on - strand, within GFF514at 511.638 kb on - strand, within GFF514at 511.638 kb on - strand, within GFF514at 511.656 kb on - strand, within GFF514at 511.678 kb on + strand, within GFF514at 511.678 kb on + strand, within GFF514at 511.678 kb on + strand, within GFF514at 511.678 kb on + strand, within GFF514at 511.678 kb on + strand, within GFF514at 511.678 kb on + strand, within GFF514at 511.678 kb on + strand, within GFF514at 511.678 kb on + strand, within GFF514at 511.678 kb on + strand, within GFF514at 511.678 kb on + strand, within GFF514at 511.678 kb on + strand, within GFF514at 511.678 kb on + strand, within GFF514at 511.678 kb on + strand, within GFF514at 511.678 kb on + strand, within GFF514at 511.680 kb on - strand, within GFF514at 511.686 kb on - strand, within GFF514at 511.686 kb on - strand, within GFF514at 511.686 kb on - strand, within GFF514at 511.686 kb on - strand, within GFF514at 511.686 kb on - strand, within GFF514at 511.686 kb on - strand, within GFF514at 511.686 kb on - strand, within GFF514at 511.686 kb on - strand, within GFF514at 511.686 kb on - strand, within GFF514at 511.686 kb on - strand, within GFF514at 511.686 kb on - strand, within GFF514at 511.686 kb on - strand, within GFF514at 511.686 kb on - strand, within GFF514at 511.686 kb on - strand, within GFF514at 511.686 kb on - strand, within GFF514at 511.686 kb on - strand, within GFF514at 511.686 kb on - strand, within GFF514at 511.686 kb on - strand, within GFF514at 511.686 kb on - strand, within GFF514at 511.697 kb on - strand, within GFF514at 511.698 kb on - strand, within GFF514at 511.775 kb on - strandat 511.775 kb on - strandat 511.809 kb on - strandat 511.851 kb on + strandat 511.874 kb on + strandat 511.874 kb on + strandat 511.883 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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510,602 + GFF513 0.25 +0.5
510,613 + GFF513 0.26 -0.9
510,613 + GFF513 0.26 -0.8
510,615 - GFF513 0.26 +0.1
510,621 - GFF513 0.27 +1.3
510,621 - GFF513 0.27 -0.1
510,621 - GFF513 0.27 +0.7
510,642 + GFF513 0.28 +1.3
510,642 + GFF513 0.28 -2.1
510,655 - GFF513 0.29 +0.5
510,655 - GFF513 0.29 -0.7
510,660 + GFF513 0.30 +0.5
510,669 - GFF513 0.31 -0.6
510,721 - GFF513 0.35 +0.7
510,723 - GFF513 0.35 +1.7
510,763 + GFF513 0.39 -1.8
510,764 - GFF513 0.39 -0.0
510,768 + GFF513 0.39 -0.3
510,768 + GFF513 0.39 -0.6
510,768 + GFF513 0.39 -1.2
510,776 - GFF513 0.40 -0.9
510,776 - GFF513 0.40 +0.9
510,776 - GFF513 0.40 +0.4
510,790 + GFF513 0.41 +0.8
510,792 - GFF513 0.41 +0.9
510,792 - GFF513 0.41 -0.5
510,792 - GFF513 0.41 +0.4
510,802 - GFF513 0.42 -0.4
510,807 + GFF513 0.42 -0.0
510,845 + GFF513 0.46 -0.5
510,860 + GFF513 0.47 -0.2
510,866 + GFF513 0.47 -0.5
510,874 - GFF513 0.48 +0.6
510,874 - GFF513 0.48 -1.7
510,879 - GFF513 0.48 +0.4
510,911 + GFF513 0.51 +0.4
510,911 + GFF513 0.51 -0.8
510,911 + GFF513 0.51 +1.1
510,913 - GFF513 0.51 +0.8
510,919 - GFF513 0.52 -0.2
510,948 + GFF513 0.54 -1.4
510,948 + GFF513 0.54 +0.4
510,948 + GFF513 0.54 +0.1
510,948 + GFF513 0.54 +0.4
510,951 - GFF513 0.54 -1.0
510,956 - GFF513 0.55 -0.9
510,962 - GFF513 0.55 -2.0
510,986 - GFF513 0.57 -1.2
510,994 + GFF513 0.58 -0.7
510,994 + GFF513 0.58 -2.7
510,995 + GFF513 0.58 -0.1
510,995 + GFF513 0.58 +0.3
510,995 + GFF513 0.58 -0.3
511,002 - GFF513 0.59 +1.1
511,002 - GFF513 0.59 -2.5
511,003 - GFF513 0.59 -1.2
511,016 - GFF513 0.60 +0.5
511,038 + GFF513 0.62 -1.7
511,038 + GFF513 0.62 -0.6
511,038 + GFF513 0.62 -1.3
511,038 + GFF513 0.62 -0.8
511,046 - GFF513 0.63 +0.6
511,046 - GFF513 0.63 +0.4
511,046 - GFF513 0.63 -3.0
511,088 + GFF513 0.66 -1.3
511,103 + GFF513 0.67 +0.2
511,114 + GFF513 0.68 -0.4
511,114 + GFF513 0.68 -0.3
511,117 - GFF513 0.69 -0.4
511,117 - GFF513 0.69 -0.3
511,119 + GFF513 0.69 -1.4
511,119 + GFF513 0.69 -1.8
511,122 - GFF513 0.69 +0.3
511,122 - GFF513 0.69 -2.5
511,122 - GFF513 0.69 -0.5
511,126 + GFF513 0.69 +0.1
511,132 - GFF513 0.70 -1.7
511,148 + GFF513 0.71 -0.8
511,148 + GFF513 0.71 -0.5
511,148 + GFF513 0.71 -1.9
511,156 - GFF513 0.72 +1.7
511,156 - GFF513 0.72 -1.2
511,182 + GFF513 0.74 -0.3
511,182 + GFF513 0.74 +0.4
511,182 + GFF513 0.74 -3.3
511,192 - GFF513 0.75 -0.5
511,205 + GFF513 0.76 +0.0
511,205 + GFF513 0.76 +1.3
511,213 - GFF513 0.77 +0.6
511,213 - GFF513 0.77 +0.3
511,230 - GFF513 0.78 +0.8
511,232 - GFF513 0.78 -1.5
511,232 - GFF513 0.78 -2.4
511,236 + GFF513 0.79 -0.7
511,259 + GFF513 0.81 -0.2
511,260 - GFF513 0.81 -0.0
511,262 - GFF513 0.81 +1.3
511,268 - GFF513 0.81 -1.6
511,300 + GFF513 0.84 -0.9
511,300 + GFF513 0.84 -1.5
511,300 + GFF513 0.84 -0.9
511,300 + GFF513 0.84 +0.4
511,307 - GFF513 0.85 -0.9
511,308 - GFF513 0.85 -0.4
511,308 - GFF513 0.85 +0.3
511,314 + GFF513 0.85 -0.5
511,318 - GFF513 0.86 +0.9
511,365 + GFF513 0.90 -1.1
511,372 + +0.5
511,379 + -0.3
511,380 + -2.4
511,380 - -0.7
511,389 + -0.7
511,392 - +0.1
511,398 - -0.0
511,412 + -2.2
511,412 + -0.8
511,412 + -0.3
511,412 + -1.3
511,412 + -0.3
511,412 + +0.6
511,412 + -0.4
511,415 - -0.9
511,416 + -0.3
511,439 + +0.6
511,439 + -0.5
511,439 + +0.9
511,447 - +0.4
511,447 - +0.5
511,447 - -0.9
511,447 - -0.8
511,449 + -0.2
511,449 + -1.8
511,449 + -2.3
511,449 + -0.1
511,449 + +0.4
511,449 + +0.2
511,449 + -1.5
511,450 + +0.5
511,457 - -0.6
511,457 - -1.1
511,457 - -0.5
511,457 - +0.1
511,490 + +1.3
511,490 - -1.8
511,490 - +0.5
511,492 + -0.2
511,498 - -0.7
511,498 - +0.3
511,498 - +1.4
511,498 - +0.1
511,511 + -1.7
511,511 + -0.8
511,513 + -1.3
511,519 - -0.6
511,541 - -1.3
511,549 - -1.0
511,549 - -0.8
511,549 - -0.6
511,549 - -1.1
511,549 - -0.6
511,561 + -0.0
511,561 + +0.8
511,564 - +0.4
511,569 - -1.5
511,596 - +0.9
511,614 + GFF514 0.14 +1.1
511,621 + GFF514 0.18 -1.3
511,630 + GFF514 0.23 +0.5
511,630 + GFF514 0.23 -2.3
511,630 + GFF514 0.23 -1.3
511,630 + GFF514 0.23 +0.5
511,638 - GFF514 0.28 -0.9
511,638 - GFF514 0.28 -0.5
511,638 - GFF514 0.28 +0.7
511,638 - GFF514 0.28 +0.1
511,638 - GFF514 0.28 -0.6
511,638 - GFF514 0.28 +0.3
511,638 - GFF514 0.28 +0.4
511,638 - GFF514 0.28 +0.4
511,656 - GFF514 0.39 +1.1
511,678 + GFF514 0.51 -1.6
511,678 + GFF514 0.51 -0.1
511,678 + GFF514 0.51 +0.2
511,678 + GFF514 0.51 -1.9
511,678 + GFF514 0.51 -2.2
511,678 + GFF514 0.51 +0.6
511,678 + GFF514 0.51 +0.5
511,678 + GFF514 0.51 -0.4
511,678 + GFF514 0.51 -0.3
511,678 + GFF514 0.51 +0.5
511,678 + GFF514 0.51 -1.4
511,678 + GFF514 0.51 +0.5
511,678 + GFF514 0.51 -0.3
511,678 + GFF514 0.51 -2.1
511,680 - GFF514 0.53 -0.6
511,686 - GFF514 0.56 +1.0
511,686 - GFF514 0.56 -1.0
511,686 - GFF514 0.56 -0.0
511,686 - GFF514 0.56 -0.4
511,686 - GFF514 0.56 +0.8
511,686 - GFF514 0.56 +0.9
511,686 - GFF514 0.56 +0.6
511,686 - GFF514 0.56 -1.7
511,686 - GFF514 0.56 -0.3
511,686 - GFF514 0.56 +0.5
511,686 - GFF514 0.56 +0.3
511,686 - GFF514 0.56 -1.3
511,686 - GFF514 0.56 -0.7
511,686 - GFF514 0.56 +0.9
511,686 - GFF514 0.56 +0.7
511,686 - GFF514 0.56 +0.2
511,686 - GFF514 0.56 +0.1
511,686 - GFF514 0.56 -0.3
511,686 - GFF514 0.56 +0.2
511,697 - GFF514 0.63 -0.9
511,698 - GFF514 0.63 -0.5
511,775 - -0.9
511,775 - -1.7
511,809 - -0.6
511,851 + -0.8
511,874 + -1.7
511,874 + -1.9
511,883 - +0.2

Or see this region's nucleotide sequence