Strain Fitness in Sphingobium sp. HT1-2 around GFF5132

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,122,742	-				+0.7
5,122,769	+				-0.4
5,122,769	+				-0.2
5,122,777	-				-2.4
5,122,777	-				-0.5
5,122,777	-				-0.4
5,122,802	-				+0.1
5,122,804	+				-2.2
5,122,804	+				-0.2
5,122,804	+				-0.7
5,122,804	+				+0.2
5,122,804	+				-0.2
5,122,804	+				+0.4
5,122,804	+				+0.6
5,122,812	-				+0.8
5,122,812	-				+0.1
5,122,812	-				+0.3
5,122,812	-				+1.6
5,122,812	-				-0.4
5,122,812	-				+0.4
5,122,812	-				+0.3
5,122,812	-				-0.1
5,122,817	-		GFF5130	0.11	-0.2
5,122,817	-		GFF5130	0.11	-1.3
5,122,819	-		GFF5130	0.12	+0.5
5,122,828	+		GFF5130	0.14	+0.2
5,122,843	+		GFF5130	0.18	-2.6
5,122,851	-		GFF5130	0.20	-0.8
5,122,851	-		GFF5130	0.20	+0.8
5,122,856	-		GFF5130	0.21	-1.7
5,122,891	-		GFF5130	0.31	-0.4
5,122,891	-		GFF5130	0.31	-0.2
5,122,891	-		GFF5130	0.31	+0.5
5,122,891	-		GFF5130	0.31	+1.0
5,122,908	-		GFF5130	0.35	+0.2
5,122,957	+		GFF5130	0.48	-1.8
5,122,957	+		GFF5130	0.48	+0.3
5,122,965	-		GFF5130	0.50	-0.3
5,122,965	-		GFF5130	0.50	-0.6
5,122,965	-		GFF5130	0.50	+0.7
5,122,998	-		GFF5130	0.59	+0.5
5,123,016	-		GFF5130	0.64	+0.4
5,123,050	+		GFF5130	0.73	-0.5
5,123,072	+		GFF5130	0.79	+0.4
5,123,077	+		GFF5130	0.80	-1.8
5,123,080	-		GFF5130	0.81	+0.1
5,123,085	-		GFF5130	0.82	+0.8
5,123,095	-		GFF5130	0.85	-2.5
5,123,095	-		GFF5130	0.85	+0.2
5,123,095	-		GFF5130	0.85	-1.9
5,123,095	-		GFF5130	0.85	-0.2
5,123,095	-		GFF5130	0.85	-1.1
5,123,095	-		GFF5130	0.85	-0.7
5,123,095	-		GFF5130	0.85	-1.7
5,123,102	+		GFF5130	0.87	-1.4
5,123,105	+		GFF5130	0.87	-0.8
5,123,118	-				-0.8
5,123,161	+				+0.7
5,123,174	+				+0.4
5,123,174	+				+0.7
5,123,174	+				+0.3
5,123,184	+				+1.5
5,123,192	-				+0.2
5,123,199	+				+0.1
5,123,199	+				-1.8
5,123,207	-				-2.9
5,123,207	-				+0.3
5,123,209	+		GFF5131	0.10	+1.1
5,123,228	-		GFF5131	0.13	-0.2
5,123,242	+		GFF5131	0.16	-0.1
5,123,250	-		GFF5131	0.17	-0.3
5,123,282	+		GFF5131	0.22	-1.2
5,123,284	-		GFF5131	0.23	+0.3
5,123,290	-		GFF5131	0.24	+0.2
5,123,290	-		GFF5131	0.24	+0.3
5,123,290	-		GFF5131	0.24	-0.2
5,123,290	-		GFF5131	0.24	+0.5
5,123,304	+		GFF5131	0.26	-0.0
5,123,312	+		GFF5131	0.27	-0.7
5,123,312	-		GFF5131	0.27	-2.5
5,123,312	-		GFF5131	0.27	-1.6
5,123,319	+		GFF5131	0.28	+0.2
5,123,319	+		GFF5131	0.28	+0.4
5,123,322	-		GFF5131	0.29	+0.7
5,123,324	+		GFF5131	0.29	-1.8
5,123,327	-		GFF5131	0.30	+0.3
5,123,327	-		GFF5131	0.30	-0.0
5,123,329	+		GFF5131	0.30	-1.7
5,123,332	-		GFF5131	0.31	-2.0
5,123,333	+		GFF5131	0.31	+0.6
5,123,337	-		GFF5131	0.31	+0.2
5,123,339	+		GFF5131	0.32	-0.2
5,123,339	+		GFF5131	0.32	-0.7
5,123,339	+		GFF5131	0.32	-0.1
5,123,389	+		GFF5131	0.40	-1.2
5,123,398	-		GFF5131	0.42	-1.7
5,123,438	-		GFF5131	0.48	+0.0
5,123,445	+		GFF5131	0.50	-0.8
5,123,453	-		GFF5131	0.51	-1.2
5,123,453	-		GFF5131	0.51	+0.2
5,123,453	-		GFF5131	0.51	-0.1
5,123,454	+		GFF5131	0.51	-2.1
5,123,454	+		GFF5131	0.51	-0.0
5,123,462	-		GFF5131	0.52	-0.1
5,123,462	-		GFF5131	0.52	+1.1
5,123,464	+		GFF5131	0.53	-0.0
5,123,464	+		GFF5131	0.53	-0.8
5,123,467	+		GFF5131	0.53	+0.7
5,123,467	-		GFF5131	0.53	-0.2
5,123,472	+		GFF5131	0.54	-1.8
5,123,472	-		GFF5131	0.54	+0.7
5,123,472	-		GFF5131	0.54	+1.2
5,123,475	-		GFF5131	0.55	-0.5
5,123,477	+		GFF5131	0.55	-0.1
5,123,482	+		GFF5131	0.56	+0.4
5,123,485	-		GFF5131	0.56	+0.1
5,123,490	-		GFF5131	0.57	-0.5
5,123,495	-		GFF5131	0.58	-0.6
5,123,500	-		GFF5131	0.59	-0.8
5,123,505	-		GFF5131	0.60	+1.6
5,123,516	+		GFF5131	0.61	+0.0
5,123,526	+		GFF5131	0.63	-0.7
5,123,526	+		GFF5131	0.63	-0.3
5,123,534	+		GFF5131	0.64	-0.8
5,123,542	-		GFF5131	0.66	+0.5
5,123,543	+		GFF5131	0.66	-0.0
5,123,549	-		GFF5131	0.67	+0.9
5,123,551	-		GFF5131	0.67	+0.8
5,123,553	+		GFF5131	0.68	-0.7
5,123,561	-		GFF5131	0.69	+0.5
5,123,568	-		GFF5131	0.70	-0.4
5,123,568	-		GFF5131	0.70	+1.2
5,123,595	-		GFF5131	0.75	+1.1
5,123,606	+		GFF5131	0.77	-0.5
5,123,621	+		GFF5131	0.79	+0.9
5,123,629	-		GFF5131	0.80	-0.7
5,123,629	-		GFF5131	0.80	+0.6
5,123,639	+		GFF5131	0.82	-1.3
5,123,656	+		GFF5131	0.85	-0.3
5,123,656	+		GFF5131	0.85	-0.5
5,123,699	+				-0.4
5,123,699	+				-1.6
5,123,699	+				-0.8
5,123,701	+				-0.7
5,123,707	-				-0.8
5,123,707	-				-0.8
5,123,733	-				-0.1
5,123,740	+				-1.0
5,123,740	+				-0.3
5,123,747	-				+0.5
5,123,748	-				-0.7
5,123,772	+				-0.2
5,123,780	-				-3.1
5,123,783	+				-0.8
5,123,791	-				+0.1
5,123,808	+				-0.8
5,123,819	+				-0.4
5,123,819	+				+0.1
5,123,819	+				-0.9
5,123,826	-				-1.8
5,123,826	-				+0.1
5,123,826	-				+0.3
5,123,827	-				+0.1
5,123,827	-				-0.2
5,123,827	-				+0.5
5,123,827	-				-0.2
5,123,827	-				+1.5
5,123,827	-				-0.6
5,123,827	-				+0.8
5,123,827	-				-1.4
5,123,827	-				-0.1
5,123,827	-				+0.3
5,123,872	+		GFF5132	0.12	-0.3
5,123,891	+		GFF5132	0.14	+0.9
5,123,891	+		GFF5132	0.14	+0.9
5,123,899	-		GFF5132	0.15	+0.6
5,123,899	-		GFF5132	0.15	-0.1
5,123,899	-		GFF5132	0.15	-0.2
5,123,906	+		GFF5132	0.16	+0.5
5,123,906	+		GFF5132	0.16	-1.2
5,123,908	+		GFF5132	0.16	+0.4
5,123,914	-		GFF5132	0.17	-0.4
5,123,915	-		GFF5132	0.17	-0.2
5,123,915	-		GFF5132	0.17	+0.3
5,123,915	-		GFF5132	0.17	-0.6
5,123,930	+		GFF5132	0.18	-0.3
5,123,952	+		GFF5132	0.20	+0.3
5,123,952	+		GFF5132	0.20	-0.7
5,123,952	+		GFF5132	0.20	+0.1
5,123,952	+		GFF5132	0.20	+0.6
5,123,952	+		GFF5132	0.20	-0.5
5,123,952	+		GFF5132	0.20	+0.2
5,123,952	+		GFF5132	0.20	-0.2
5,123,952	+		GFF5132	0.20	+0.1
5,123,952	+		GFF5132	0.20	-1.2
5,123,957	+		GFF5132	0.21	-0.1
5,123,957	+		GFF5132	0.21	+0.7
5,123,957	+		GFF5132	0.21	-0.1
5,123,960	-		GFF5132	0.21	+0.8
5,123,960	-		GFF5132	0.21	+0.2
5,123,960	-		GFF5132	0.21	-1.0
5,123,960	-		GFF5132	0.21	+0.3
5,123,960	-		GFF5132	0.21	-0.2
5,123,960	-		GFF5132	0.21	-0.1
5,123,960	-		GFF5132	0.21	+1.1
5,123,960	-		GFF5132	0.21	-0.1
5,123,960	-		GFF5132	0.21	-0.4
5,123,960	-		GFF5132	0.21	-0.3
5,123,960	-		GFF5132	0.21	-1.5
5,123,960	-		GFF5132	0.21	-1.5
5,123,960	-		GFF5132	0.21	-0.8
5,123,962	+		GFF5132	0.21	-1.0
5,123,962	+		GFF5132	0.21	-1.0
5,123,962	+		GFF5132	0.21	-0.1
5,123,962	+		GFF5132	0.21	+1.0
5,123,965	-		GFF5132	0.21	+0.2
5,123,965	-		GFF5132	0.21	-0.3
5,123,965	-		GFF5132	0.21	-1.2
5,123,970	-		GFF5132	0.22	+0.8
5,123,970	-		GFF5132	0.22	-0.9
5,123,970	-		GFF5132	0.22	-0.6
5,123,970	-		GFF5132	0.22	-1.5
5,123,970	-		GFF5132	0.22	+0.6
5,123,984	+		GFF5132	0.23	-1.1
5,123,984	+		GFF5132	0.23	+0.0
5,124,011	+		GFF5132	0.26	-2.4
5,124,028	-		GFF5132	0.27	+0.2
5,124,048	-		GFF5132	0.29	-1.5
5,124,055	+		GFF5132	0.30	-1.8
5,124,056	+		GFF5132	0.30	+0.6
5,124,069	-		GFF5132	0.31	-0.4
5,124,128	-		GFF5132	0.37	-1.5
5,124,146	-		GFF5132	0.39	-0.5
5,124,168	+		GFF5132	0.41	-0.2
5,124,168	+		GFF5132	0.41	+0.5
5,124,168	+		GFF5132	0.41	-0.5
5,124,176	-		GFF5132	0.42	+1.4
5,124,185	-		GFF5132	0.43	+0.3
5,124,190	-		GFF5132	0.43	+0.8
5,124,212	+		GFF5132	0.45	-0.2
5,124,212	+		GFF5132	0.45	-0.8
5,124,212	+		GFF5132	0.45	+0.6
5,124,220	-		GFF5132	0.46	-0.3
5,124,220	-		GFF5132	0.46	-0.0
5,124,220	-		GFF5132	0.46	-0.1
5,124,222	+		GFF5132	0.46	-0.2
5,124,229	+		GFF5132	0.47	-0.4
5,124,237	-		GFF5132	0.48	-1.3
5,124,249	+		GFF5132	0.49	-0.6
5,124,257	-		GFF5132	0.49	+0.8
5,124,257	-		GFF5132	0.49	-0.1
5,124,266	+		GFF5132	0.50	-1.9
5,124,266	+		GFF5132	0.50	-0.3
5,124,271	+		GFF5132	0.51	-1.5
5,124,271	+		GFF5132	0.51	-1.2
5,124,279	-		GFF5132	0.52	-0.8
5,124,306	-		GFF5132	0.54	+0.5
5,124,312	+		GFF5132	0.55	-2.4
5,124,312	+		GFF5132	0.55	-0.1
5,124,321	+		GFF5132	0.56	-0.3
5,124,329	-		GFF5132	0.56	-0.8
5,124,334	-		GFF5132	0.57	+0.3
5,124,360	+		GFF5132	0.59	-0.8
5,124,363	-		GFF5132	0.60	+0.2
5,124,370	+		GFF5132	0.60	+0.1
5,124,378	-		GFF5132	0.61	-1.8
5,124,378	-		GFF5132	0.61	+1.4
5,124,378	-		GFF5132	0.61	+0.6
5,124,396	-		GFF5132	0.63	-0.4
5,124,397	+		GFF5132	0.63	-0.7
5,124,413	+		GFF5132	0.64	+0.9
5,124,413	+		GFF5132	0.64	+0.0
5,124,413	+		GFF5132	0.64	-0.8
5,124,416	-		GFF5132	0.65	-0.5
5,124,418	+		GFF5132	0.65	+0.4
5,124,443	+		GFF5132	0.67	+1.0
5,124,443	+		GFF5132	0.67	-0.3
5,124,443	+		GFF5132	0.67	-0.0
5,124,443	+		GFF5132	0.67	-0.7
5,124,443	+		GFF5132	0.67	+0.0
5,124,462	+		GFF5132	0.69	-1.0
5,124,470	-		GFF5132	0.70	+1.2
5,124,529	+		GFF5132	0.76	+1.2
5,124,532	-		GFF5132	0.76	-0.3
5,124,555	-		GFF5132	0.78	+0.1
5,124,555	-		GFF5132	0.78	+0.3
5,124,555	-		GFF5132	0.78	+0.3
5,124,555	-		GFF5132	0.78	-1.3
5,124,557	+		GFF5132	0.78	+0.5
5,124,561	+		GFF5132	0.79	-0.7
5,124,561	+		GFF5132	0.79	+0.6
5,124,561	+		GFF5132	0.79	-1.1
5,124,569	-		GFF5132	0.79	+0.1
5,124,569	-		GFF5132	0.79	-0.5
5,124,627	+		GFF5132	0.85	-0.1
5,124,639	-		GFF5132	0.86	-0.3
5,124,639	-		GFF5132	0.86	-0.9
5,124,658	-		GFF5132	0.88	-0.5
5,124,707	-				-1.3
5,124,718	+				-0.2
5,124,720	-				+0.3
5,124,740	-				-0.5
5,124,744	+				+0.9
5,124,749	+				-0.9
5,124,757	-				-0.1
5,124,767	+				-0.8
5,124,772	+				+1.4
5,124,776	+				-1.0
5,124,777	+				+0.8
5,124,805	-				-0.3
5,124,809	+				-1.3
5,124,810	-				-2.0
5,124,810	-				-0.8
5,124,828	-		GFF5133	0.24	+0.1
5,124,870	-		GFF5133	0.59	+0.3
5,124,892	+		GFF5133	0.78	+0.1
5,124,892	-		GFF5133	0.78	+1.6
5,124,936	+				-2.2
5,124,944	-				+0.8
5,124,946	+				-0.4
5,124,959	-				+0.7
5,124,962	+				+1.3
5,124,965	+				+0.6
5,124,969	-				+1.0
5,124,971	-				-0.0
5,124,972	+				-0.2
5,124,994	+				+0.5
5,124,994	+				+1.1
5,124,999	+				+0.5
5,124,999	+				+0.6
5,125,002	-				+1.4
5,125,002	-				+0.3
5,125,002	-				-0.1
5,125,007	-				+0.7
5,125,007	-				-0.5
5,125,014	+				+0.3
5,125,022	-				+0.6
5,125,028	-				-1.5
5,125,028	-				-0.7
5,125,028	-				+0.5
5,125,058	-				+0.5
5,125,058	-				+0.1
5,125,069	-				+0.5
5,125,079	-				-1.5
5,125,084	-				+0.1
5,125,118	+				-0.5
5,125,122	+				-0.2
5,125,148	+				-0.1
5,125,153	+				-0.1
5,125,153	+				-0.8
5,125,153	+				-0.4
5,125,153	+				-0.8
5,125,153	+				-0.5
5,125,153	+				+1.1
5,125,153	+				+0.6
5,125,153	+				+1.4
5,125,153	+				-0.9
5,125,153	+				-2.0
5,125,156	-				+0.7
5,125,156	-				-0.2
5,125,158	+				+0.1
5,125,158	+				-0.6
5,125,158	+				-0.4
5,125,161	-				-1.9
5,125,161	-				+0.6
5,125,161	-				-0.4
5,125,161	-				+0.2
5,125,161	-				-0.1
5,125,161	-				-0.2
5,125,161	-				-0.6
5,125,163	-				+1.2
5,125,171	-				-0.8
5,125,174	-				+1.1
5,125,214	-				+0.1
5,125,219	+				-2.4
5,125,225	+				+1.0
5,125,225	+				+0.0
5,125,225	+				+1.2
5,125,227	-				-0.1
5,125,233	-				+0.1
5,125,233	-				-0.6
5,125,233	-				+0.7
5,125,233	-				+1.3
5,125,241	-		GFF5134	0.10	-2.2
5,125,267	+		GFF5134	0.11	-1.0
5,125,267	+		GFF5134	0.11	-0.0
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