Strain Fitness in Sphingobium sp. HT1-2 around GFF5122

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,112,345	-		GFF5121	0.53	-2.2
5,112,356	-		GFF5121	0.54	-0.7
5,112,371	+		GFF5121	0.54	-0.9
5,112,379	-		GFF5121	0.55	-1.0
5,112,390	+		GFF5121	0.55	+1.1
5,112,391	-		GFF5121	0.55	+1.1
5,112,391	-		GFF5121	0.55	+0.2
5,112,391	-		GFF5121	0.55	-1.0
5,112,391	-		GFF5121	0.55	-0.7
5,112,431	+		GFF5121	0.57	-0.9
5,112,450	-		GFF5121	0.58	-1.3
5,112,457	+		GFF5121	0.58	-1.7
5,112,464	+		GFF5121	0.59	-0.3
5,112,464	+		GFF5121	0.59	-2.4
5,112,472	-		GFF5121	0.59	+0.2
5,112,504	-		GFF5121	0.61	+0.8
5,112,520	-		GFF5121	0.61	+0.5
5,112,544	-		GFF5121	0.63	-0.2
5,112,549	+		GFF5121	0.63	-1.0
5,112,552	-		GFF5121	0.63	-0.3
5,112,552	-		GFF5121	0.63	-1.4
5,112,552	-		GFF5121	0.63	+0.6
5,112,554	+		GFF5121	0.63	+0.4
5,112,562	-		GFF5121	0.63	-0.2
5,112,562	-		GFF5121	0.63	-0.1
5,112,562	-		GFF5121	0.63	-1.0
5,112,562	-		GFF5121	0.63	+0.8
5,112,562	-		GFF5121	0.63	-0.0
5,112,562	-		GFF5121	0.63	+0.0
5,112,562	-		GFF5121	0.63	-0.5
5,112,580	-		GFF5121	0.64	+0.7
5,112,614	+		GFF5121	0.66	-0.7
5,112,616	+		GFF5121	0.66	-0.3
5,112,619	-		GFF5121	0.66	+0.5
5,112,619	-		GFF5121	0.66	+1.6
5,112,622	-		GFF5121	0.66	+0.4
5,112,643	+		GFF5121	0.67	+1.3
5,112,681	-		GFF5121	0.69	-0.5
5,112,705	+		GFF5121	0.70	-0.9
5,112,705	+		GFF5121	0.70	+0.6
5,112,715	+		GFF5121	0.71	-1.2
5,112,720	+		GFF5121	0.71	+0.6
5,112,720	+		GFF5121	0.71	+0.1
5,112,728	-		GFF5121	0.71	-0.6
5,112,732	-		GFF5121	0.72	-0.2
5,112,765	+		GFF5121	0.73	+0.6
5,112,810	-		GFF5121	0.75	+0.1
5,112,823	-		GFF5121	0.76	+0.0
5,112,823	-		GFF5121	0.76	-1.0
5,112,831	-		GFF5121	0.76	-1.2
5,112,833	-		GFF5121	0.76	+0.4
5,112,833	-		GFF5121	0.76	-0.9
5,112,844	-		GFF5121	0.77	+0.3
5,112,851	-		GFF5121	0.77	-1.0
5,112,858	+		GFF5121	0.78	+0.2
5,112,864	+		GFF5121	0.78	+0.3
5,112,864	+		GFF5121	0.78	-0.8
5,112,866	-		GFF5121	0.78	+0.3
5,112,881	+		GFF5121	0.79	+0.0
5,112,886	+		GFF5121	0.79	-0.4
5,112,889	-		GFF5121	0.79	+0.2
5,112,893	+		GFF5121	0.79	-0.3
5,112,893	+		GFF5121	0.79	+0.8
5,112,893	+		GFF5121	0.79	-1.4
5,112,898	+		GFF5121	0.79	+1.1
5,112,934	+		GFF5121	0.81	-2.0
5,112,942	-		GFF5121	0.82	-1.6
5,112,961	+		GFF5121	0.82	-0.5
5,112,961	+		GFF5121	0.82	-1.0
5,112,993	+		GFF5121	0.84	-0.2
5,112,996	-		GFF5121	0.84	+0.6
5,113,009	+		GFF5121	0.85	+0.7
5,113,009	+		GFF5121	0.85	-0.2
5,113,017	-		GFF5121	0.85	-0.9
5,113,063	+		GFF5121	0.87	-0.0
5,113,106	-		GFF5121	0.89	+0.3
5,113,128	+				-0.5
5,113,134	+				-0.7
5,113,134	+				+1.3
5,113,140	+				-0.4
5,113,142	-				-0.3
5,113,142	-				-0.8
5,113,142	-				+0.1
5,113,157	-				-0.9
5,113,158	+				-0.6
5,113,160	+				-0.0
5,113,160	+				+0.6
5,113,166	-				-1.7
5,113,168	-				+0.7
5,113,168	-				+1.0
5,113,192	-				-0.9
5,113,199	+				-2.6
5,113,200	+				+0.7
5,113,200	+				-1.2
5,113,205	+				+0.8
5,113,208	+				+0.3
5,113,216	+				+0.2
5,113,216	+				-0.1
5,113,216	+				-0.2
5,113,224	-				-3.7
5,113,224	-				-0.4
5,113,237	+				-0.7
5,113,245	+				-0.8
5,113,253	+				-1.2
5,113,262	-				-0.9
5,113,267	-				-1.7
5,113,267	-				+0.4
5,113,306	+				-0.5
5,113,324	-				-0.9
5,113,336	+				+0.6
5,113,336	+				-0.4
5,113,355	+				+0.2
5,113,363	-				-0.3
5,113,365	+				-0.5
5,113,368	-				+1.2
5,113,408	+				-0.1
5,113,425	+				+1.3
5,113,426	+				-0.7
5,113,445	-				+1.1
5,113,509	-		GFF5122	0.13	-0.1
5,113,509	-		GFF5122	0.13	+0.7
5,113,524	-		GFF5122	0.14	+0.4
5,113,545	+		GFF5122	0.16	-0.4
5,113,545	+		GFF5122	0.16	+1.1
5,113,545	+		GFF5122	0.16	-0.3
5,113,553	-		GFF5122	0.17	+0.0
5,113,553	-		GFF5122	0.17	+0.3
5,113,588	+		GFF5122	0.19	+0.1
5,113,588	+		GFF5122	0.19	+0.7
5,113,591	-		GFF5122	0.20	-0.6
5,113,594	+		GFF5122	0.20	+0.1
5,113,594	+		GFF5122	0.20	-2.5
5,113,602	-		GFF5122	0.21	-2.7
5,113,609	-		GFF5122	0.21	-1.7
5,113,620	+		GFF5122	0.22	-0.2
5,113,634	+		GFF5122	0.23	+0.5
5,113,650	+		GFF5122	0.24	-0.7
5,113,651	-		GFF5122	0.24	-0.7
5,113,663	+		GFF5122	0.25	-2.1
5,113,664	-		GFF5122	0.25	-1.7
5,113,673	+		GFF5122	0.26	-1.3
5,113,686	-		GFF5122	0.27	-0.2
5,113,691	-		GFF5122	0.27	+0.1
5,113,691	-		GFF5122	0.27	+0.6
5,113,695	+		GFF5122	0.28	-0.4
5,113,696	-		GFF5122	0.28	+0.6
5,113,696	-		GFF5122	0.28	-1.1
5,113,703	-		GFF5122	0.28	-0.2
5,113,721	+		GFF5122	0.30	-0.5
5,113,721	+		GFF5122	0.30	+0.5
5,113,737	+		GFF5122	0.31	-0.7
5,113,746	-		GFF5122	0.32	+0.7
5,113,755	+		GFF5122	0.32	+0.6
5,113,757	+		GFF5122	0.33	-1.0
5,113,757	+		GFF5122	0.33	+0.3
5,113,757	+		GFF5122	0.33	-0.4
5,113,757	+		GFF5122	0.33	-0.6
5,113,762	+		GFF5122	0.33	-0.9
5,113,763	-		GFF5122	0.33	+0.4
5,113,765	-		GFF5122	0.33	+0.6
5,113,765	-		GFF5122	0.33	+0.7
5,113,765	-		GFF5122	0.33	+0.1
5,113,765	-		GFF5122	0.33	-2.1
5,113,792	-		GFF5122	0.35	-0.3
5,113,809	-		GFF5122	0.37	-1.5
5,113,809	-		GFF5122	0.37	+0.6
5,113,824	-		GFF5122	0.38	-0.3
5,113,824	-		GFF5122	0.38	-0.8
5,113,828	+		GFF5122	0.38	-0.1
5,113,860	-		GFF5122	0.41	+0.1
5,113,881	-		GFF5122	0.42	+0.4
5,113,892	+		GFF5122	0.43	-0.8
5,113,897	+		GFF5122	0.43	-0.1
5,113,900	-		GFF5122	0.44	-0.8
5,113,900	-		GFF5122	0.44	-0.8
5,113,918	+		GFF5122	0.45	-0.1
5,113,926	-		GFF5122	0.46	+0.1
5,113,939	+		GFF5122	0.47	+0.4
5,113,939	+		GFF5122	0.47	-0.8
5,113,947	-		GFF5122	0.47	-0.3
5,113,947	-		GFF5122	0.47	+2.2
5,113,947	-		GFF5122	0.47	+0.0
5,113,947	-		GFF5122	0.47	-0.7
5,114,003	-		GFF5122	0.52	+0.1
5,114,009	-		GFF5122	0.52	+1.4
5,114,009	-		GFF5122	0.52	+0.4
5,114,024	-		GFF5122	0.53	-2.5
5,114,034	-		GFF5122	0.54	+0.1
5,114,053	+		GFF5122	0.56	+0.3
5,114,083	+		GFF5122	0.58	-0.2
5,114,091	-		GFF5122	0.59	-0.7
5,114,091	-		GFF5122	0.59	-1.3
5,114,091	-		GFF5122	0.59	+0.7
5,114,099	+		GFF5122	0.59	+0.5
5,114,114	-		GFF5122	0.60	-1.7
5,114,116	+		GFF5122	0.60	-1.4
5,114,129	-		GFF5122	0.61	+0.1
5,114,143	+		GFF5122	0.63	+1.6
5,114,186	+		GFF5122	0.66	+0.6
5,114,187	+		GFF5122	0.66	+0.3
5,114,194	+		GFF5122	0.67	-0.7
5,114,194	-		GFF5122	0.67	+0.2
5,114,202	-		GFF5122	0.67	-1.1
5,114,202	-		GFF5122	0.67	-0.9
5,114,202	-		GFF5122	0.67	+0.3
5,114,213	+		GFF5122	0.68	-0.4
5,114,221	-		GFF5122	0.69	-0.8
5,114,223	+		GFF5122	0.69	+0.2
5,114,226	+		GFF5122	0.69	+0.3
5,114,234	-		GFF5122	0.70	+1.1
5,114,258	+		GFF5122	0.71	-0.1
5,114,258	-		GFF5122	0.71	-1.0
5,114,266	-		GFF5122	0.72	-1.5
5,114,266	-		GFF5122	0.72	-0.7
5,114,271	-		GFF5122	0.72	-2.4
5,114,281	-		GFF5122	0.73	-0.4
5,114,281	-		GFF5122	0.73	-2.1
5,114,291	+		GFF5122	0.74	+2.0
5,114,291	+		GFF5122	0.74	+1.6
5,114,291	+		GFF5122	0.74	+1.3
5,114,299	-		GFF5122	0.75	+0.6
5,114,299	-		GFF5122	0.75	-2.0
5,114,299	-		GFF5122	0.75	+1.7
5,114,299	-		GFF5122	0.75	-1.1
5,114,299	-		GFF5122	0.75	+0.3
5,114,299	-		GFF5122	0.75	-1.7
5,114,351	-		GFF5122	0.79	+0.1
5,114,372	+		GFF5122	0.80	-0.2
5,114,380	-		GFF5122	0.81	+0.3
5,114,395	+		GFF5122	0.82	-0.3
5,114,395	-		GFF5122	0.82	-1.7
5,114,398	-		GFF5122	0.82	-1.9
5,114,411	+		GFF5122	0.83	+0.5
5,114,436	-		GFF5122	0.85	-0.3
5,114,451	-		GFF5122	0.86	+0.5
5,114,458	+		GFF5122	0.87	-0.1
5,114,460	+		GFF5122	0.87	-0.3
5,114,460	+		GFF5122	0.87	-0.0
5,114,460	+		GFF5122	0.87	-2.4
5,114,460	+		GFF5122	0.87	+0.9
5,114,464	+		GFF5122	0.87	+0.5
5,114,466	-		GFF5122	0.88	-0.7
5,114,468	-		GFF5122	0.88	+0.3
5,114,472	-		GFF5122	0.88	+0.1
5,114,472	-		GFF5122	0.88	-1.2
5,114,505	+				-0.9
5,114,513	-				-0.3
5,114,513	-				-1.5
5,114,546	-				+0.2
5,114,553	-				-1.0
5,114,553	-				+1.2
5,114,555	+				+0.6
5,114,585	+				+0.1
5,114,591	-				-0.9
5,114,596	+				+0.6
5,114,604	+				-1.4
5,114,605	+				-0.5
5,114,613	-				-0.1
5,114,617	-				+0.3
5,114,650	-				-0.9
5,114,655	+				-2.1
5,114,663	-				+0.4
5,114,702	+				+0.2
5,114,710	-				-0.8
5,114,710	-				+0.2
5,114,724	+				-1.4
5,114,732	-				+0.8
5,114,733	-				-0.7
5,114,735	+				-0.2
5,114,740	+				-0.3
5,114,742	-				+0.3
5,114,745	+				-0.3
5,114,773	+				-0.3
5,114,792	-				+0.9
5,114,854	-		GFF5123	0.10	-0.2
5,114,872	+		GFF5123	0.11	-1.6
5,114,893	-		GFF5123	0.12	-1.2
5,114,919	+		GFF5123	0.13	-2.3
5,114,919	+		GFF5123	0.13	+0.8
5,114,919	+		GFF5123	0.13	+0.1
5,114,919	+		GFF5123	0.13	-1.4
5,114,927	-		GFF5123	0.14	-0.4
5,114,927	-		GFF5123	0.14	+0.3
5,114,927	-		GFF5123	0.14	-1.3
5,114,927	-		GFF5123	0.14	-1.7
5,114,934	-		GFF5123	0.14	-2.0
5,114,936	+		GFF5123	0.14	-1.2
5,114,944	-		GFF5123	0.14	-1.4
5,114,986	+		GFF5123	0.16	+1.2
5,114,986	+		GFF5123	0.16	-0.5
5,114,986	+		GFF5123	0.16	+0.7
5,114,986	+		GFF5123	0.16	+0.1
5,114,986	+		GFF5123	0.16	-0.6
5,114,986	+		GFF5123	0.16	-0.0
5,114,994	-		GFF5123	0.17	+0.9
5,114,994	-		GFF5123	0.17	-0.2
5,114,994	-		GFF5123	0.17	-1.5
5,114,994	-		GFF5123	0.17	+0.9
5,114,994	-		GFF5123	0.17	-1.1
5,114,994	-		GFF5123	0.17	-0.6
5,115,006	-		GFF5123	0.17	+0.2
5,115,021	+		GFF5123	0.18	+0.5
5,115,021	-		GFF5123	0.18	+1.1
5,115,055	+		GFF5123	0.19	-1.1
5,115,099	-		GFF5123	0.21	+1.1
5,115,112	-		GFF5123	0.22	-0.1
5,115,115	+		GFF5123	0.22	-1.6
5,115,115	+		GFF5123	0.22	+0.9
5,115,146	+		GFF5123	0.23	-1.4
5,115,154	-		GFF5123	0.24	+0.5
5,115,154	-		GFF5123	0.24	-0.6
5,115,184	+		GFF5123	0.25	+0.6
5,115,184	+		GFF5123	0.25	-0.2
5,115,198	-		GFF5123	0.26	+0.3
5,115,204	-		GFF5123	0.26	-1.0
5,115,209	+		GFF5123	0.26	-1.5
5,115,246	-		GFF5123	0.28	+0.3
5,115,246	-		GFF5123	0.28	+0.1
5,115,252	-		GFF5123	0.28	+0.5
5,115,266	+		GFF5123	0.29	+1.4
5,115,266	+		GFF5123	0.29	-1.1
5,115,321	+		GFF5123	0.31	-0.2
5,115,321	+		GFF5123	0.31	+0.1
5,115,321	+		GFF5123	0.31	-0.1
5,115,329	-		GFF5123	0.32	-0.2
5,115,329	-		GFF5123	0.32	+0.2
5,115,329	-		GFF5123	0.32	+1.2
5,115,329	-		GFF5123	0.32	-1.5
5,115,333	+		GFF5123	0.32	-1.1
5,115,341	-		GFF5123	0.32	+1.4
5,115,341	-		GFF5123	0.32	+0.0
5,115,349	-		GFF5123	0.32	+0.3
5,115,376	-		GFF5123	0.34	+0.9
5,115,395	+		GFF5123	0.34	-0.7
5,115,395	+		GFF5123	0.34	+0.6
5,115,403	-		GFF5123	0.35	-1.7
5,115,417	+		GFF5123	0.35	-0.8
5,115,417	+		GFF5123	0.35	-0.9
5,115,417	+		GFF5123	0.35	-1.7
5,115,417	+		GFF5123	0.35	+0.9
5,115,420	-		GFF5123	0.36	+0.2
5,115,425	-		GFF5123	0.36	+0.3
5,115,425	-		GFF5123	0.36	-0.8
5,115,425	-		GFF5123	0.36	+0.1
5,115,431	-		GFF5123	0.36	+0.5
5,115,480	+		GFF5123	0.38	-0.3
5,115,495	-		GFF5123	0.39	+0.2
5,115,510	-		GFF5123	0.40	+0.5
5,115,553	-		GFF5123	0.42	-0.3
5,115,553	-		GFF5123	0.42	-0.3
5,115,568	+		GFF5123	0.42	-0.7