Strain Fitness in Sphingobium sp. HT1-2 around GFF5119

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,107,503	+				-0.4
5,107,505	+				-0.6
5,107,511	-				-1.4
5,107,511	-				+0.6
5,107,528	-				-0.3
5,107,558	+				+0.5
5,107,576	-				+0.3
5,107,583	+				-1.0
5,107,583	-				-0.9
5,107,591	-				-0.4
5,107,621	+				+1.1
5,107,623	+				+1.9
5,107,623	+				-1.5
5,107,628	+				+0.9
5,107,631	-				-0.6
5,107,631	-				+0.6
5,107,637	+				-0.5
5,107,645	-				-1.4
5,107,645	-				-0.0
5,107,645	-				-0.2
5,107,645	-				-0.7
5,107,664	+				+1.4
5,107,677	+				+0.6
5,107,677	+				-0.5
5,107,679	+				-0.1
5,107,679	+				+0.1
5,107,684	+				+0.0
5,107,684	+				+0.8
5,107,685	-				-0.9
5,107,685	-				+0.4
5,107,685	-				-1.9
5,107,685	-				+0.0
5,107,687	-				-1.7
5,107,725	+				-1.5
5,107,733	-				+0.4
5,107,735	+				+0.5
5,107,749	+				+0.0
5,107,757	-				+0.4
5,107,773	-				-0.2
5,107,785	-				+0.7
5,107,827	+				+0.8
5,107,830	-				-0.6
5,107,830	-				-1.1
5,107,832	+				-0.2
5,107,832	-				+0.1
5,107,832	-				+0.7
5,107,832	-				-0.5
5,107,832	-				+0.2
5,107,837	+				+0.6
5,107,837	+				-1.5
5,107,837	+				+0.2
5,107,845	-				+1.2
5,107,845	-				+0.2
5,107,852	+		GFF5118	0.11	-1.7
5,107,860	-		GFF5118	0.12	+0.5
5,107,860	-		GFF5118	0.12	-1.2
5,107,868	+		GFF5118	0.13	-0.0
5,107,868	+		GFF5118	0.13	+1.4
5,107,886	-		GFF5118	0.16	-0.4
5,107,922	-		GFF5118	0.21	-2.6
5,107,942	+		GFF5118	0.24	+1.3
5,107,944	-		GFF5118	0.24	-0.8
5,107,945	+		GFF5118	0.24	-0.7
5,107,945	-		GFF5118	0.24	-1.2
5,107,948	-		GFF5118	0.24	-0.2
5,107,966	+		GFF5118	0.27	+0.2
5,107,967	+		GFF5118	0.27	-1.9
5,107,970	-		GFF5118	0.27	-0.0
5,107,975	+		GFF5118	0.28	-0.9
5,107,975	-		GFF5118	0.28	-2.1
5,107,975	-		GFF5118	0.28	+0.2
5,108,001	+		GFF5118	0.32	+0.4
5,108,014	+		GFF5118	0.34	-0.5
5,108,015	+		GFF5118	0.34	-0.5
5,108,015	+		GFF5118	0.34	+0.6
5,108,015	+		GFF5118	0.34	-0.1
5,108,021	+		GFF5118	0.35	+0.6
5,108,023	-		GFF5118	0.35	+0.3
5,108,023	-		GFF5118	0.35	+0.7
5,108,036	-		GFF5118	0.37	-2.0
5,108,057	-		GFF5118	0.40	+0.2
5,108,121	+		GFF5118	0.49	+0.3
5,108,121	+		GFF5118	0.49	-1.5
5,108,147	+		GFF5118	0.52	+0.2
5,108,147	+		GFF5118	0.52	+0.4
5,108,155	-		GFF5118	0.53	-0.6
5,108,161	-		GFF5118	0.54	-0.9
5,108,171	-		GFF5118	0.56	-0.6
5,108,181	+		GFF5118	0.57	-0.7
5,108,181	+		GFF5118	0.57	-0.3
5,108,188	+		GFF5118	0.58	-0.5
5,108,196	-		GFF5118	0.59	+0.0
5,108,196	-		GFF5118	0.59	-0.7
5,108,196	-		GFF5118	0.59	-0.4
5,108,196	-		GFF5118	0.59	-0.9
5,108,215	-		GFF5118	0.62	+0.0
5,108,230	+		GFF5118	0.64	-0.5
5,108,248	-		GFF5118	0.66	-0.4
5,108,276	+		GFF5118	0.70	+0.7
5,108,284	-		GFF5118	0.71	-0.2
5,108,287	+		GFF5118	0.72	+0.2
5,108,315	+		GFF5118	0.76	-0.5
5,108,319	-		GFF5118	0.76	+0.3
5,108,345	+		GFF5118	0.80	-0.0
5,108,350	+		GFF5118	0.81	+0.6
5,108,352	-		GFF5118	0.81	+0.3
5,108,355	+		GFF5118	0.81	+0.7
5,108,359	-		GFF5118	0.82	-0.9
5,108,359	-		GFF5118	0.82	-0.4
5,108,359	-		GFF5118	0.82	+0.4
5,108,363	-		GFF5118	0.82	+0.3
5,108,363	-		GFF5118	0.82	+0.4
5,108,363	-		GFF5118	0.82	+0.1
5,108,363	-		GFF5118	0.82	-0.0
5,108,363	-		GFF5118	0.82	+0.0
5,108,363	-		GFF5118	0.82	+0.7
5,108,370	+		GFF5118	0.83	-0.4
5,108,385	+		GFF5118	0.86	-2.3
5,108,388	-		GFF5118	0.86	-0.2
5,108,412	-		GFF5118	0.89	+0.1
5,108,413	-		GFF5118	0.89	-1.1
5,108,419	+				+1.3
5,108,419	+				+1.5
5,108,427	-				-1.0
5,108,459	+				-1.9
5,108,464	+				+0.3
5,108,472	-				-1.0
5,108,472	-				+0.2
5,108,472	-				-0.4
5,108,472	-				+1.1
5,108,482	+				+0.7
5,108,482	+				-0.1
5,108,482	+				-1.9
5,108,490	-				-0.2
5,108,490	-				+0.0
5,108,519	+				-1.7
5,108,522	-				-2.5
5,108,534	+				-0.1
5,108,536	+				+0.6
5,108,536	+				-0.9
5,108,541	+				-0.2
5,108,543	+				+0.5
5,108,544	-				-0.3
5,108,544	-				+0.4
5,108,544	-				+0.5
5,108,559	-				-0.7
5,108,564	+				-0.1
5,108,572	-				-2.9
5,108,572	-				-0.6
5,108,577	+				-0.2
5,108,582	+				-0.1
5,108,582	+				-0.1
5,108,583	+				-0.4
5,108,583	+				+0.2
5,108,583	+				-1.7
5,108,583	+				+0.1
5,108,590	-		GFF5119	0.10	+0.3
5,108,590	-		GFF5119	0.10	-0.1
5,108,592	+		GFF5119	0.10	-0.4
5,108,600	-		GFF5119	0.11	-0.5
5,108,603	+		GFF5119	0.12	+0.5
5,108,603	+		GFF5119	0.12	+0.3
5,108,603	+		GFF5119	0.12	+0.7
5,108,608	+		GFF5119	0.12	+1.1
5,108,611	-		GFF5119	0.12	+0.1
5,108,611	-		GFF5119	0.12	+0.3
5,108,635	+		GFF5119	0.15	-0.3
5,108,636	+		GFF5119	0.15	-0.4
5,108,638	-		GFF5119	0.15	-0.6
5,108,650	+		GFF5119	0.17	+0.0
5,108,653	-		GFF5119	0.17	+0.1
5,108,655	+		GFF5119	0.17	+0.4
5,108,655	+		GFF5119	0.17	+1.1
5,108,699	+		GFF5119	0.22	-0.6
5,108,746	+		GFF5119	0.27	+0.3
5,108,746	+		GFF5119	0.27	-1.2
5,108,746	+		GFF5119	0.27	+0.1
5,108,754	-		GFF5119	0.28	+0.0
5,108,754	-		GFF5119	0.28	-0.5
5,108,754	-		GFF5119	0.28	-0.6
5,108,781	-		GFF5119	0.31	-0.5
5,108,796	+		GFF5119	0.33	-0.3
5,108,796	+		GFF5119	0.33	-0.2
5,108,802	+		GFF5119	0.33	-0.5
5,108,815	+		GFF5119	0.35	-1.0
5,108,823	-		GFF5119	0.36	+0.6
5,108,823	-		GFF5119	0.36	+0.6
5,108,852	+		GFF5119	0.39	+0.6
5,108,862	+		GFF5119	0.40	-1.0
5,108,862	+		GFF5119	0.40	+1.0
5,108,862	+		GFF5119	0.40	-1.2
5,108,862	+		GFF5119	0.40	-2.3
5,108,862	+		GFF5119	0.40	-0.7
5,108,862	+		GFF5119	0.40	+0.3
5,108,870	-		GFF5119	0.41	-0.7
5,108,870	-		GFF5119	0.41	-0.2
5,108,870	-		GFF5119	0.41	-0.4
5,108,870	-		GFF5119	0.41	-0.6
5,108,870	-		GFF5119	0.41	+0.3
5,108,870	-		GFF5119	0.41	-0.7
5,108,870	-		GFF5119	0.41	+0.7
5,108,870	-		GFF5119	0.41	-0.7
5,108,870	-		GFF5119	0.41	-0.9
5,108,870	-		GFF5119	0.41	-1.0
5,108,870	-		GFF5119	0.41	-1.7
5,108,870	-		GFF5119	0.41	-0.1
5,108,887	+		GFF5119	0.43	-0.2
5,108,905	-		GFF5119	0.45	+0.6
5,108,915	-		GFF5119	0.46	+1.3
5,108,932	-		GFF5119	0.48	-1.9
5,108,950	-		GFF5119	0.50	-1.2
5,108,950	-		GFF5119	0.50	-0.1
5,108,950	-		GFF5119	0.50	+0.0
5,108,976	+		GFF5119	0.53	-0.4
5,108,976	+		GFF5119	0.53	-1.1
5,108,976	+		GFF5119	0.53	-1.7
5,108,984	-		GFF5119	0.53	+0.5
5,108,984	-		GFF5119	0.53	-0.5
5,108,984	-		GFF5119	0.53	-0.5
5,108,984	-		GFF5119	0.53	-0.5
5,108,984	-		GFF5119	0.53	+0.2
5,108,984	-		GFF5119	0.53	+0.2
5,108,986	+		GFF5119	0.54	-0.5
5,108,994	-		GFF5119	0.54	+0.6
5,108,994	-		GFF5119	0.54	-0.3
5,109,028	+		GFF5119	0.58	-1.0
5,109,073	+		GFF5119	0.63	-0.5
5,109,081	-		GFF5119	0.64	+0.4
5,109,085	+		GFF5119	0.64	-0.5
5,109,093	-		GFF5119	0.65	-0.7
5,109,093	-		GFF5119	0.65	-1.3
5,109,093	-		GFF5119	0.65	-0.4
5,109,109	+		GFF5119	0.67	-0.9
5,109,109	+		GFF5119	0.67	+1.4
5,109,112	-		GFF5119	0.67	-0.9
5,109,112	-		GFF5119	0.67	-2.7
5,109,114	+		GFF5119	0.68	-1.6
5,109,114	+		GFF5119	0.68	-1.1
5,109,122	+		GFF5119	0.69	-0.4
5,109,122	-		GFF5119	0.69	+1.1
5,109,122	-		GFF5119	0.69	-0.0
5,109,122	-		GFF5119	0.69	+1.3
5,109,122	-		GFF5119	0.69	-0.4
5,109,130	-		GFF5119	0.69	-0.5
5,109,132	+		GFF5119	0.70	-1.9
5,109,132	+		GFF5119	0.70	+0.9
5,109,132	+		GFF5119	0.70	-2.1
5,109,140	-		GFF5119	0.71	+0.2
5,109,140	-		GFF5119	0.71	+0.2
5,109,140	-		GFF5119	0.71	+0.5
5,109,140	-		GFF5119	0.71	-0.3
5,109,140	-		GFF5119	0.71	+0.1
5,109,140	-		GFF5119	0.71	+0.3
5,109,150	+		GFF5119	0.72	+0.8
5,109,158	-		GFF5119	0.72	+1.5
5,109,173	+		GFF5119	0.74	-0.4
5,109,205	+		GFF5119	0.78	+0.3
5,109,215	+		GFF5119	0.79	+0.3
5,109,221	+		GFF5119	0.79	+0.1
5,109,221	+		GFF5119	0.79	+0.5
5,109,221	+		GFF5119	0.79	-1.0
5,109,221	+		GFF5119	0.79	-0.7
5,109,221	+		GFF5119	0.79	+0.4
5,109,229	-		GFF5119	0.80	+1.4
5,109,229	-		GFF5119	0.80	+0.1
5,109,229	-		GFF5119	0.80	+0.5
5,109,229	-		GFF5119	0.80	-0.7
5,109,229	-		GFF5119	0.80	+1.0
5,109,237	-		GFF5119	0.81	+0.6
5,109,258	+		GFF5119	0.83	-0.4
5,109,263	+		GFF5119	0.84	-2.7
5,109,271	-		GFF5119	0.85	-0.4
5,109,271	-		GFF5119	0.85	+0.4
5,109,271	-		GFF5119	0.85	-0.1
5,109,271	-		GFF5119	0.85	-2.3
5,109,271	-		GFF5119	0.85	-0.4
5,109,283	+		GFF5119	0.86	-2.0
5,109,302	+		GFF5119	0.88	-1.2
5,109,322	-				+0.6
5,109,322	-				-2.4
5,109,322	-				-2.2
5,109,329	+				+0.4
5,109,339	+				+0.4
5,109,342	+				+1.1
5,109,342	+				-1.4
5,109,347	-				-1.4
5,109,350	-				+0.3
5,109,350	-				-1.5
5,109,374	-				-0.2
5,109,381	+				-0.4
5,109,381	+				+0.6
5,109,386	+				+0.1
5,109,389	-				+1.1
5,109,389	-				-0.8
5,109,390	+				+0.1
5,109,394	-				+0.6
5,109,400	+				-0.9
5,109,400	+				+0.9
5,109,400	+				+0.0
5,109,400	+				-0.2
5,109,400	+				+0.3
5,109,400	+				-1.0
5,109,400	+				+0.2
5,109,400	+				-0.1
5,109,405	+				+0.1
5,109,408	-				+0.0
5,109,408	-				-2.0
5,109,408	-				-2.7
5,109,408	-				-0.4
5,109,408	-				+1.0
5,109,408	-				+0.5
5,109,408	-				-1.0
5,109,410	+				-0.7
5,109,410	+				-0.0
5,109,417	+				+0.3
5,109,418	-				-0.2
5,109,418	-				+0.6
5,109,418	-				-0.5
5,109,418	-				+0.1
5,109,418	-				-0.0
5,109,418	-				-0.5
5,109,418	-				-1.0
5,109,418	-				+0.6
5,109,418	-				-0.7
5,109,420	+				-0.2
5,109,420	+				-1.4
5,109,420	+				-2.3
5,109,420	+				-1.7
5,109,425	-				-1.6
5,109,428	-				-1.4
5,109,440	+				-1.4
5,109,448	+				-0.4
5,109,448	-				-0.3
5,109,448	-				+0.7
5,109,448	-				+1.8
5,109,456	+				-1.9
5,109,456	-				-1.7
5,109,456	-				-0.3
5,109,456	-				-1.2
5,109,474	-				-0.0
5,109,474	-				-0.4
5,109,487	-				+0.1
5,109,509	+				-0.4
5,109,509	+				+0.5
5,109,511	+				+0.1
5,109,512	-				-0.7
5,109,516	+				-0.7
5,109,516	+				-0.2
5,109,516	+				+0.6
5,109,516	+				-0.2
5,109,517	-				+0.5
5,109,517	-				+0.9
5,109,526	+				-2.8
5,109,534	-				-0.2
5,109,553	+				-0.7
5,109,566	-				-0.2
5,109,641	+		GFF5120	0.13	-0.7
5,109,659	+		GFF5120	0.14	-2.4
5,109,669	+		GFF5120	0.15	-1.5
5,109,674	+		GFF5120	0.15	+0.1
5,109,677	-		GFF5120	0.15	-0.2
5,109,688	+		GFF5120	0.16	-2.0
5,109,688	+		GFF5120	0.16	+0.8
5,109,688	+		GFF5120	0.16	-0.7
5,109,688	+		GFF5120	0.16	-0.7
5,109,688	+		GFF5120	0.16	-2.1
5,109,688	+		GFF5120	0.16	-0.7
5,109,688	+		GFF5120	0.16	-1.0
5,109,688	+		GFF5120	0.16	+0.1
5,109,696	-		GFF5120	0.16	-0.3
5,109,696	-		GFF5120	0.16	-1.1
5,109,696	-		GFF5120	0.16	+0.3
5,109,696	-		GFF5120	0.16	-0.0
5,109,696	-		GFF5120	0.16	-0.7
5,109,696	-		GFF5120	0.16	+0.1
5,109,696	-		GFF5120	0.16	+1.2
5,109,696	-		GFF5120	0.16	-0.9
5,109,696	-		GFF5120	0.16	+0.9
5,109,712	+		GFF5120	0.17	-2.9
5,109,749	-		GFF5120	0.19	-0.9
5,109,789	-		GFF5120	0.21	-1.7
5,109,804	-		GFF5120	0.22	-0.0
5,109,827	+		GFF5120	0.23	+0.5
5,109,832	+		GFF5120	0.24	-0.9
5,109,840	-		GFF5120	0.24	+0.1
5,109,840	-		GFF5120	0.24	-0.8
5,109,860	-		GFF5120	0.25	+1.6
5,109,864	-		GFF5120	0.25	+0.6
5,109,864	-		GFF5120	0.25	+0.7
5,109,875	+		GFF5120	0.26	-1.4
5,109,899	+		GFF5120	0.27	-1.0
5,109,909	+		GFF5120	0.28	-0.4
5,109,909	+		GFF5120	0.28	-1.3
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