Strain Fitness in Sphingobium sp. HT1-2 around GFF5106

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,092,661	+		GFF5105	0.14	-0.7
5,092,723	+		GFF5105	0.19	-1.2
5,092,723	+		GFF5105	0.19	-0.3
5,092,723	+		GFF5105	0.19	-0.3
5,092,731	-		GFF5105	0.20	-1.1
5,092,731	-		GFF5105	0.20	-3.3
5,092,731	-		GFF5105	0.20	-0.8
5,092,739	+		GFF5105	0.21	+0.3
5,092,772	+		GFF5105	0.24	-1.1
5,092,772	+		GFF5105	0.24	-1.1
5,092,772	-		GFF5105	0.24	-1.5
5,092,787	+		GFF5105	0.25	-1.4
5,092,787	+		GFF5105	0.25	-0.1
5,092,795	-		GFF5105	0.26	-1.1
5,092,795	-		GFF5105	0.26	-2.2
5,092,795	-		GFF5105	0.26	+1.2
5,092,795	-		GFF5105	0.26	-1.5
5,092,795	-		GFF5105	0.26	-0.8
5,092,795	-		GFF5105	0.26	-1.6
5,092,820	+		GFF5105	0.28	-1.0
5,092,820	+		GFF5105	0.28	+0.5
5,092,820	+		GFF5105	0.28	-1.0
5,092,820	+		GFF5105	0.28	-0.1
5,092,820	+		GFF5105	0.28	-0.3
5,092,820	+		GFF5105	0.28	-0.1
5,092,820	+		GFF5105	0.28	-1.6
5,092,820	+		GFF5105	0.28	-1.7
5,092,820	+		GFF5105	0.28	-0.4
5,092,820	+		GFF5105	0.28	+0.0
5,092,820	+		GFF5105	0.28	-0.7
5,092,820	+		GFF5105	0.28	-1.8
5,092,820	+		GFF5105	0.28	+0.0
5,092,820	+		GFF5105	0.28	-0.3
5,092,823	-		GFF5105	0.28	-1.8
5,092,828	-		GFF5105	0.29	-1.9
5,092,828	-		GFF5105	0.29	-0.8
5,092,828	-		GFF5105	0.29	-1.3
5,092,828	-		GFF5105	0.29	+0.1
5,092,828	-		GFF5105	0.29	-0.0
5,092,828	-		GFF5105	0.29	-0.0
5,092,828	-		GFF5105	0.29	-0.6
5,092,828	-		GFF5105	0.29	-0.4
5,092,828	-		GFF5105	0.29	-3.2
5,092,828	-		GFF5105	0.29	-0.2
5,092,828	-		GFF5105	0.29	-1.5
5,092,828	-		GFF5105	0.29	+1.2
5,092,828	-		GFF5105	0.29	-2.0
5,092,828	-		GFF5105	0.29	-0.7
5,092,828	-		GFF5105	0.29	-2.1
5,092,828	-		GFF5105	0.29	-1.0
5,092,828	-		GFF5105	0.29	-1.1
5,092,828	-		GFF5105	0.29	-2.1
5,092,830	-		GFF5105	0.29	-1.2
5,092,838	-		GFF5105	0.29	-0.9
5,092,856	+		GFF5105	0.31	-1.0
5,092,861	+		GFF5105	0.31	-1.1
5,092,866	+		GFF5105	0.32	+0.2
5,092,869	-		GFF5105	0.32	-1.0
5,092,871	-		GFF5105	0.32	-0.5
5,092,887	+		GFF5105	0.34	-0.8
5,092,895	-		GFF5105	0.34	-1.0
5,092,895	-		GFF5105	0.34	-0.7
5,092,896	-		GFF5105	0.35	-2.1
5,092,896	-		GFF5105	0.35	-1.0
5,092,896	-		GFF5105	0.35	-2.8
5,092,897	-		GFF5105	0.35	-1.0
5,092,900	-		GFF5105	0.35	-1.3
5,092,901	+		GFF5105	0.35	+0.6
5,092,920	-		GFF5105	0.37	+0.1
5,092,932	+		GFF5105	0.38	-0.6
5,092,941	-		GFF5105	0.39	+0.6
5,092,942	-		GFF5105	0.39	-1.1
5,092,942	-		GFF5105	0.39	-0.5
5,092,947	-		GFF5105	0.39	-0.8
5,092,982	+		GFF5105	0.42	-2.9
5,093,043	-		GFF5105	0.48	-0.7
5,093,077	-		GFF5105	0.51	-2.3
5,093,087	+		GFF5105	0.51	-0.3
5,093,087	+		GFF5105	0.51	-1.0
5,093,097	+		GFF5105	0.52	+1.7
5,093,119	+		GFF5105	0.54	-0.3
5,093,122	-		GFF5105	0.54	-1.6
5,093,127	-		GFF5105	0.55	-0.5
5,093,161	+		GFF5105	0.58	+0.7
5,093,161	+		GFF5105	0.58	-0.9
5,093,161	+		GFF5105	0.58	-1.0
5,093,177	-		GFF5105	0.59	-0.9
5,093,187	+		GFF5105	0.60	-1.3
5,093,195	-		GFF5105	0.61	+0.1
5,093,198	+		GFF5105	0.61	-3.2
5,093,208	-		GFF5105	0.62	+0.3
5,093,232	-		GFF5105	0.64	-1.3
5,093,247	+		GFF5105	0.66	-0.3
5,093,258	-		GFF5105	0.66	+0.2
5,093,258	-		GFF5105	0.66	-0.4
5,093,275	+		GFF5105	0.68	-1.1
5,093,289	+		GFF5105	0.69	+0.9
5,093,294	+		GFF5105	0.70	-1.0
5,093,297	-		GFF5105	0.70	+0.1
5,093,302	+		GFF5105	0.70	-0.2
5,093,310	-		GFF5105	0.71	-2.2
5,093,310	-		GFF5105	0.71	-0.9
5,093,330	+		GFF5105	0.73	-0.0
5,093,330	+		GFF5105	0.73	-0.9
5,093,330	+		GFF5105	0.73	+0.1
5,093,330	+		GFF5105	0.73	+0.4
5,093,330	+		GFF5105	0.73	-0.8
5,093,330	+		GFF5105	0.73	-2.5
5,093,330	+		GFF5105	0.73	-0.9
5,093,335	+		GFF5105	0.73	+0.1
5,093,338	-		GFF5105	0.74	-1.7
5,093,338	-		GFF5105	0.74	-0.1
5,093,340	+		GFF5105	0.74	-0.7
5,093,340	+		GFF5105	0.74	-0.4
5,093,340	+		GFF5105	0.74	+0.7
5,093,348	-		GFF5105	0.74	+0.3
5,093,355	-		GFF5105	0.75	-0.2
5,093,355	-		GFF5105	0.75	-1.0
5,093,355	-		GFF5105	0.75	-0.8
5,093,355	-		GFF5105	0.75	-0.6
5,093,355	-		GFF5105	0.75	-0.9
5,093,356	-		GFF5105	0.75	+0.2
5,093,381	+		GFF5105	0.77	+1.0
5,093,389	-		GFF5105	0.78	-1.8
5,093,389	-		GFF5105	0.78	-1.3
5,093,391	+		GFF5105	0.78	-2.5
5,093,396	+		GFF5105	0.79	-1.2
5,093,404	-		GFF5105	0.79	-1.0
5,093,421	+		GFF5105	0.81	-0.4
5,093,424	-		GFF5105	0.81	-2.7
5,093,448	+		GFF5105	0.83	-1.4
5,093,456	-		GFF5105	0.84	-1.5
5,093,456	-		GFF5105	0.84	-2.2
5,093,493	-		GFF5105	0.87	-2.0
5,093,505	-		GFF5105	0.88	-0.9
5,093,513	+		GFF5105	0.89	-0.1
5,093,513	+		GFF5105	0.89	-0.1
5,093,513	+		GFF5105	0.89	+0.2
5,093,518	+		GFF5105	0.89	-2.6
5,093,518	+		GFF5105	0.89	-0.6
5,093,521	-		GFF5105	0.90	+0.2
5,093,521	-		GFF5105	0.90	-2.1
5,093,521	-		GFF5105	0.90	-0.9
5,093,521	-		GFF5105	0.90	-1.8
5,093,521	-		GFF5105	0.90	+0.1
5,093,521	-		GFF5105	0.90	-0.2
5,093,521	-		GFF5105	0.90	-1.3
5,093,523	+		GFF5105	0.90	+0.2
5,093,551	+				-0.6
5,093,559	+				-0.6
5,093,559	+				-1.2
5,093,566	+				+0.1
5,093,566	-				-0.3
5,093,567	-				-1.7
5,093,567	-				-1.2
5,093,567	-				-0.5
5,093,567	-				-1.3
5,093,567	-				-0.1
5,093,567	-				+1.5
5,093,590	+				-1.1
5,093,595	+				+0.9
5,093,604	-				+0.7
5,093,604	-				-1.0
5,093,611	+				-1.8
5,093,611	+				+0.3
5,093,619	-				+0.6
5,093,619	-				-2.4
5,093,619	-				+0.7
5,093,635	+				+0.1
5,093,635	+				-0.1
5,093,646	+				-0.2
5,093,652	-				-0.2
5,093,654	-				-2.5
5,093,658	+				-1.4
5,093,691	+				-1.3
5,093,694	-				+0.6
5,093,699	-				+0.0
5,093,708	+				+0.6
5,093,716	+				-0.5
5,093,723	+				+0.2
5,093,723	+				-1.3
5,093,731	-				-0.7
5,093,766	-		GFF5106	0.13	-0.8
5,093,799	-		GFF5106	0.16	-1.6
5,093,799	-		GFF5106	0.16	-2.0
5,093,799	-		GFF5106	0.16	-3.2
5,093,801	-		GFF5106	0.17	-0.8
5,093,808	+		GFF5106	0.17	-2.0
5,093,811	+		GFF5106	0.18	-0.8
5,093,816	+		GFF5106	0.18	+0.6
5,093,816	+		GFF5106	0.18	-3.7
5,093,819	-		GFF5106	0.18	-0.9
5,093,821	+		GFF5106	0.19	-0.3
5,093,822	+		GFF5106	0.19	-1.6
5,093,822	+		GFF5106	0.19	+0.5
5,093,822	+		GFF5106	0.19	+0.7
5,093,822	+		GFF5106	0.19	-1.0
5,093,822	+		GFF5106	0.19	-0.5
5,093,822	+		GFF5106	0.19	-1.2
5,093,826	-		GFF5106	0.19	-0.2
5,093,828	-		GFF5106	0.19	+0.2
5,093,829	+		GFF5106	0.19	-1.0
5,093,830	-		GFF5106	0.20	-2.7
5,093,840	-		GFF5106	0.20	+0.7
5,093,840	-		GFF5106	0.20	-1.3
5,093,850	+		GFF5106	0.21	-2.0
5,093,850	+		GFF5106	0.21	-0.2
5,093,850	+		GFF5106	0.21	-1.1
5,093,850	+		GFF5106	0.21	-0.6
5,093,850	-		GFF5106	0.21	-0.6
5,093,858	-		GFF5106	0.22	+0.6
5,093,858	-		GFF5106	0.22	-0.8
5,093,860	+		GFF5106	0.22	-1.3
5,093,879	+		GFF5106	0.24	+0.1
5,093,879	+		GFF5106	0.24	-0.1
5,093,880	+		GFF5106	0.24	-0.1
5,093,880	-		GFF5106	0.24	-0.9
5,093,887	-		GFF5106	0.25	-2.8
5,093,887	-		GFF5106	0.25	+0.2
5,093,887	-		GFF5106	0.25	+0.0
5,093,888	-		GFF5106	0.25	-3.3
5,093,888	-		GFF5106	0.25	-0.6
5,093,890	+		GFF5106	0.25	-2.4
5,093,890	+		GFF5106	0.25	+0.7
5,093,890	+		GFF5106	0.25	-0.5
5,093,890	+		GFF5106	0.25	-1.7
5,093,890	+		GFF5106	0.25	+0.3
5,093,890	+		GFF5106	0.25	-1.0
5,093,890	+		GFF5106	0.25	-1.5
5,093,890	+		GFF5106	0.25	-0.5
5,093,890	+		GFF5106	0.25	-2.6
5,093,890	+		GFF5106	0.25	-0.6
5,093,890	+		GFF5106	0.25	-0.2
5,093,890	+		GFF5106	0.25	-0.8
5,093,890	+		GFF5106	0.25	-1.0
5,093,890	+		GFF5106	0.25	-1.7
5,093,890	+		GFF5106	0.25	-2.0
5,093,890	+		GFF5106	0.25	-0.4
5,093,890	+		GFF5106	0.25	+0.2
5,093,890	+		GFF5106	0.25	-0.2
5,093,890	+		GFF5106	0.25	+0.3
5,093,890	+		GFF5106	0.25	-0.2
5,093,890	+		GFF5106	0.25	+0.3
5,093,890	+		GFF5106	0.25	-0.7
5,093,890	+		GFF5106	0.25	-0.6
5,093,890	+		GFF5106	0.25	-0.3
5,093,890	+		GFF5106	0.25	+0.6
5,093,890	+		GFF5106	0.25	-1.2
5,093,890	+		GFF5106	0.25	-0.9
5,093,890	+		GFF5106	0.25	-1.1
5,093,890	+		GFF5106	0.25	+0.5
5,093,890	+		GFF5106	0.25	-0.5
5,093,890	+		GFF5106	0.25	-2.5
5,093,890	+		GFF5106	0.25	-1.9
5,093,890	+		GFF5106	0.25	-0.3
5,093,890	+		GFF5106	0.25	+0.3
5,093,890	+		GFF5106	0.25	-0.2
5,093,898	-		GFF5106	0.26	-0.1
5,093,898	-		GFF5106	0.26	-3.0
5,093,898	-		GFF5106	0.26	-0.5
5,093,898	-		GFF5106	0.26	+1.2
5,093,898	-		GFF5106	0.26	+0.9
5,093,898	-		GFF5106	0.26	-0.7
5,093,898	-		GFF5106	0.26	-0.2
5,093,898	-		GFF5106	0.26	-1.5
5,093,898	-		GFF5106	0.26	-0.4
5,093,898	-		GFF5106	0.26	-1.1
5,093,898	-		GFF5106	0.26	+0.4
5,093,898	-		GFF5106	0.26	-1.3
5,093,898	-		GFF5106	0.26	-0.8
5,093,898	-		GFF5106	0.26	-0.3
5,093,898	-		GFF5106	0.26	-1.0
5,093,898	-		GFF5106	0.26	+0.3
5,093,898	-		GFF5106	0.26	-0.5
5,093,898	-		GFF5106	0.26	-0.5
5,093,898	-		GFF5106	0.26	-1.4
5,093,898	-		GFF5106	0.26	-0.1
5,093,898	-		GFF5106	0.26	-0.7
5,093,898	-		GFF5106	0.26	-3.2
5,093,898	-		GFF5106	0.26	-1.2
5,093,898	-		GFF5106	0.26	-0.5
5,093,898	-		GFF5106	0.26	-0.4
5,093,898	-		GFF5106	0.26	-2.7
5,093,898	-		GFF5106	0.26	-1.7
5,093,898	-		GFF5106	0.26	+0.2
5,093,898	-		GFF5106	0.26	-1.8
5,093,898	-		GFF5106	0.26	-2.1
5,093,898	-		GFF5106	0.26	-0.1
5,093,898	-		GFF5106	0.26	-0.6
5,093,898	-		GFF5106	0.26	-0.9
5,093,898	-		GFF5106	0.26	-0.8
5,093,898	-		GFF5106	0.26	-0.7
5,093,898	-		GFF5106	0.26	-0.8
5,093,898	-		GFF5106	0.26	-1.8
5,093,913	-		GFF5106	0.28	-1.0
5,093,915	+		GFF5106	0.28	-0.8
5,093,915	+		GFF5106	0.28	+0.1
5,093,934	-		GFF5106	0.30	-2.2
5,093,937	+		GFF5106	0.30	+0.4
5,093,937	+		GFF5106	0.30	-0.6
5,093,938	-		GFF5106	0.30	-0.8
5,093,965	-		GFF5106	0.33	+1.1
5,094,012	+		GFF5106	0.38	-0.7
5,094,012	+		GFF5106	0.38	-0.8
5,094,012	+		GFF5106	0.38	-0.6
5,094,012	+		GFF5106	0.38	-0.7
5,094,020	-		GFF5106	0.38	-0.5
5,094,020	-		GFF5106	0.38	-1.5
5,094,020	-		GFF5106	0.38	-1.5
5,094,020	-		GFF5106	0.38	-2.3
5,094,020	-		GFF5106	0.38	-0.6
5,094,026	-		GFF5106	0.39	-0.2
5,094,035	+		GFF5106	0.40	-0.2
5,094,035	+		GFF5106	0.40	-2.0
5,094,041	+		GFF5106	0.40	-0.8
5,094,043	-		GFF5106	0.41	-0.7
5,094,054	+		GFF5106	0.42	+0.4
5,094,057	-		GFF5106	0.42	-1.1
5,094,062	-		GFF5106	0.43	+0.5
5,094,064	-		GFF5106	0.43	-0.2
5,094,094	-		GFF5106	0.46	-0.5
5,094,104	-		GFF5106	0.47	-0.9
5,094,112	-		GFF5106	0.48	-1.5
5,094,160	+		GFF5106	0.52	-3.0
5,094,160	+		GFF5106	0.52	-0.8
5,094,166	+		GFF5106	0.53	+0.8
5,094,168	-		GFF5106	0.53	+0.6
5,094,168	-		GFF5106	0.53	-0.2
5,094,174	-		GFF5106	0.54	-1.2
5,094,180	-		GFF5106	0.54	-0.7
5,094,185	-		GFF5106	0.55	+0.2
5,094,187	+		GFF5106	0.55	+0.7
5,094,188	+		GFF5106	0.55	-0.7
5,094,188	+		GFF5106	0.55	-0.4
5,094,195	+		GFF5106	0.56	-1.3
5,094,211	-		GFF5106	0.57	-1.0
5,094,227	-		GFF5106	0.59	+0.1
5,094,266	+		GFF5106	0.63	-1.8
5,094,266	+		GFF5106	0.63	-1.8
5,094,266	+		GFF5106	0.63	-1.2
5,094,271	+		GFF5106	0.63	-0.6
5,094,274	-		GFF5106	0.64	-0.8
5,094,274	-		GFF5106	0.64	+0.2
5,094,279	-		GFF5106	0.64	-3.2
5,094,279	-		GFF5106	0.64	-0.6
5,094,279	-		GFF5106	0.64	-0.2
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5,094,283	+		GFF5106	0.65	-0.9
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5,094,293	+		GFF5106	0.66	+0.3
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5,094,352	+		GFF5106	0.71	-2.4
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5,094,389	-		GFF5106	0.75	-0.8
5,094,390	+		GFF5106	0.75	+0.1
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5,094,397	+		GFF5106	0.76	-1.2
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5,094,397	+		GFF5106	0.76	-0.8
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5,094,409	+		GFF5106	0.77	-1.4
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5,094,442	-		GFF5106	0.80	-0.4
5,094,467	-		GFF5106	0.83	-1.5
5,094,472	+		GFF5106	0.83	-0.1
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5,094,487	-		GFF5106	0.85	-1.8
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5,094,499	+		GFF5106	0.86	-1.4
5,094,499	+		GFF5106	0.86	-1.1
5,094,499	+		GFF5106	0.86	-1.4
5,094,499	+		GFF5106	0.86	-2.6
5,094,504	+		GFF5106	0.87	-1.2
5,094,507	+		GFF5106	0.87	-0.7
5,094,507	-		GFF5106	0.87	-0.0
5,094,553	-				-1.5
5,094,553	-				+0.1
5,094,560	-				+0.5
5,094,578	-				+0.2
5,094,589	+				-0.6
5,094,601	+				-2.3
5,094,604	-				-2.1
5,094,608	+				-1.7
5,094,610	-				-2.1
5,094,648	+				-0.9
5,094,675	-				-0.6
5,094,676	-				-1.1
5,094,678	-				-2.8
5,094,700	+				+0.6
5,094,712	-				-1.7
5,094,714	+				-1.2
5,094,718	-				-1.0
5,094,731	+				-1.0
5,094,739	-				-1.5
5,094,739	-				-1.8
5,094,761	+				+0.4
5,094,806	+		GFF5107	0.11	-1.5
5,094,814	-		GFF5107	0.12	-2.0
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5,094,879	-		GFF5107	0.16	+1.0
5,094,879	-		GFF5107	0.16	-1.6
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5,094,894	-		GFF5107	0.17	-2.2
5,094,894	-		GFF5107	0.17	+0.8
5,094,906	+		GFF5107	0.18	-0.4
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5,094,987	-		GFF5107	0.24	-0.4
5,094,994	-		GFF5107	0.24	-2.1
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5,095,039	+		GFF5107	0.27	-1.7
5,095,039	+		GFF5107	0.27	-0.3
5,095,041	+		GFF5107	0.27	+0.6
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5,095,047	-		GFF5107	0.28	+0.8
5,095,047	-		GFF5107	0.28	-0.6
5,095,047	-		GFF5107	0.28	+0.3
5,095,047	-		GFF5107	0.28	-1.8
5,095,047	-		GFF5107	0.28	-2.1
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5,095,049	-		GFF5107	0.28	-1.9
5,095,051	+		GFF5107	0.28	-0.2
5,095,051	+		GFF5107	0.28	-0.1
5,095,055	+		GFF5107	0.28	+0.4
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5,095,078	-		GFF5107	0.30	-2.4
5,095,085	-		GFF5107	0.30	-0.5
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5,095,157	+		GFF5107	0.35	-0.4
5,095,157	+		GFF5107	0.35	+0.0
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5,095,165	-		GFF5107	0.35	-0.5
5,095,165	-		GFF5107	0.35	+0.1
5,095,165	-		GFF5107	0.35	-0.9
5,095,178	+		GFF5107	0.36	-1.9
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5,095,210	+		GFF5107	0.38	-1.2
5,095,210	+		GFF5107	0.38	+0.6
5,095,210	+		GFF5107	0.38	+0.1
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5,095,212	+		GFF5107	0.39	-1.6
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5,095,218	-		GFF5107	0.39	-2.2
5,095,218	-		GFF5107	0.39	-0.1
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5,095,293	+		GFF5107	0.44	-2.1
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5,095,293	+		GFF5107	0.44	-2.1
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5,095,301	-		GFF5107	0.44	-1.3
5,095,301	-		GFF5107	0.44	-0.1
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5,095,301	-		GFF5107	0.44	-0.7
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5,095,397	-		GFF5107	0.51	-2.1
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5,095,397	-		GFF5107	0.51	-1.9
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5,095,471	+		GFF5107	0.56	-1.9
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5,095,479	-		GFF5107	0.56	-2.1
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5,095,501	+		GFF5107	0.58	-1.8
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5,095,501	+		GFF5107	0.58	-2.4
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5,095,527	-		GFF5107	0.60	-0.1
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5,095,555	+		GFF5107	0.61	-1.8
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5,095,589	+		GFF5107	0.64	-1.9
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5,095,638	+		GFF5107	0.67	-0.8