Strain Fitness in Sphingobium sp. HT1-2 around GFF5088

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,078,924	-		GFF5087	0.13	+0.3
5,078,926	+		GFF5087	0.13	+1.8
5,078,926	+		GFF5087	0.13	-0.7
5,078,926	+		GFF5087	0.13	-0.6
5,078,960	-		GFF5087	0.16	+0.2
5,078,969	-		GFF5087	0.17	-3.1
5,078,974	-		GFF5087	0.18	-0.2
5,078,985	+		GFF5087	0.19	+0.2
5,078,985	+		GFF5087	0.19	-0.4
5,078,985	+		GFF5087	0.19	-1.8
5,078,991	-		GFF5087	0.19	+1.1
5,078,993	-		GFF5087	0.19	+0.4
5,079,001	+		GFF5087	0.20	-1.0
5,079,006	+		GFF5087	0.21	-0.5
5,079,006	+		GFF5087	0.21	-1.8
5,079,014	-		GFF5087	0.22	-1.1
5,079,023	-		GFF5087	0.22	+0.5
5,079,044	+		GFF5087	0.24	-1.1
5,079,061	-		GFF5087	0.26	-0.9
5,079,067	-		GFF5087	0.27	-1.7
5,079,070	+		GFF5087	0.27	-1.4
5,079,080	-		GFF5087	0.28	-1.2
5,079,085	+		GFF5087	0.28	-2.9
5,079,098	-		GFF5087	0.30	-1.8
5,079,100	+		GFF5087	0.30	+0.3
5,079,134	+		GFF5087	0.33	-0.4
5,079,134	+		GFF5087	0.33	+0.1
5,079,140	+		GFF5087	0.34	-2.8
5,079,153	-		GFF5087	0.35	-1.5
5,079,161	-		GFF5087	0.36	-0.1
5,079,167	-		GFF5087	0.36	+1.0
5,079,181	+		GFF5087	0.38	+0.1
5,079,189	-		GFF5087	0.39	-1.9
5,079,196	+		GFF5087	0.39	-0.9
5,079,196	+		GFF5087	0.39	-3.3
5,079,196	+		GFF5087	0.39	-0.1
5,079,196	+		GFF5087	0.39	-1.4
5,079,196	+		GFF5087	0.39	-0.3
5,079,196	+		GFF5087	0.39	-0.8
5,079,201	+		GFF5087	0.40	+0.7
5,079,204	-		GFF5087	0.40	-1.4
5,079,204	-		GFF5087	0.40	-0.7
5,079,204	-		GFF5087	0.40	-0.5
5,079,204	-		GFF5087	0.40	+0.2
5,079,204	-		GFF5087	0.40	-0.4
5,079,204	-		GFF5087	0.40	-0.9
5,079,206	+		GFF5087	0.40	-0.7
5,079,206	+		GFF5087	0.40	+0.3
5,079,206	+		GFF5087	0.40	-1.6
5,079,206	+		GFF5087	0.40	+0.3
5,079,214	-		GFF5087	0.41	-0.8
5,079,214	-		GFF5087	0.41	-0.5
5,079,229	-		GFF5087	0.42	+0.1
5,079,230	+		GFF5087	0.43	-1.5
5,079,235	+		GFF5087	0.43	-0.9
5,079,238	-		GFF5087	0.43	-0.8
5,079,240	+		GFF5087	0.44	-0.6
5,079,244	+		GFF5087	0.44	+0.1
5,079,249	+		GFF5087	0.44	-2.1
5,079,257	-		GFF5087	0.45	-0.1
5,079,285	+		GFF5087	0.48	-2.2
5,079,293	-		GFF5087	0.49	-1.1
5,079,293	-		GFF5087	0.49	-3.2
5,079,303	-		GFF5087	0.50	-0.8
5,079,303	-		GFF5087	0.50	+0.7
5,079,320	+		GFF5087	0.51	-0.4
5,079,320	+		GFF5087	0.51	-1.1
5,079,323	-		GFF5087	0.52	-0.5
5,079,326	+		GFF5087	0.52	-1.3
5,079,326	+		GFF5087	0.52	+0.6
5,079,339	-		GFF5087	0.53	-0.4
5,079,348	+		GFF5087	0.54	-2.2
5,079,359	-		GFF5087	0.55	-0.2
5,079,364	-		GFF5087	0.56	-0.1
5,079,364	-		GFF5087	0.56	+0.1
5,079,367	+		GFF5087	0.56	-0.2
5,079,368	+		GFF5087	0.56	-2.5
5,079,368	+		GFF5087	0.56	-0.2
5,079,368	+		GFF5087	0.56	-0.2
5,079,373	+		GFF5087	0.57	-0.6
5,079,373	+		GFF5087	0.57	-1.3
5,079,373	+		GFF5087	0.57	+0.4
5,079,373	+		GFF5087	0.57	-0.1
5,079,373	+		GFF5087	0.57	-1.6
5,079,373	+		GFF5087	0.57	-0.8
5,079,373	+		GFF5087	0.57	+0.4
5,079,376	-		GFF5087	0.57	+0.3
5,079,376	-		GFF5087	0.57	-1.9
5,079,376	-		GFF5087	0.57	-3.2
5,079,379	+		GFF5087	0.57	-0.3
5,079,379	+		GFF5087	0.57	-0.7
5,079,379	+		GFF5087	0.57	-1.6
5,079,379	+		GFF5087	0.57	-0.4
5,079,379	+		GFF5087	0.57	-1.1
5,079,379	+		GFF5087	0.57	-0.1
5,079,379	+		GFF5087	0.57	+0.6
5,079,379	+		GFF5087	0.57	-2.3
5,079,379	+		GFF5087	0.57	+0.5
5,079,381	-		GFF5087	0.57	-0.2
5,079,381	-		GFF5087	0.57	-2.0
5,079,381	-		GFF5087	0.57	-1.4
5,079,381	-		GFF5087	0.57	-0.5
5,079,381	-		GFF5087	0.57	-0.4
5,079,381	-		GFF5087	0.57	+0.1
5,079,386	+		GFF5087	0.58	+0.2
5,079,387	-		GFF5087	0.58	-3.1
5,079,387	-		GFF5087	0.58	+0.4
5,079,387	-		GFF5087	0.58	-1.2
5,079,387	-		GFF5087	0.58	-0.8
5,079,387	-		GFF5087	0.58	-2.3
5,079,387	-		GFF5087	0.58	-0.0
5,079,432	-		GFF5087	0.62	-1.8
5,079,438	-		GFF5087	0.63	-0.9
5,079,450	+		GFF5087	0.64	-0.8
5,079,451	-		GFF5087	0.64	+0.2
5,079,455	+		GFF5087	0.65	+0.2
5,079,455	+		GFF5087	0.65	+0.1
5,079,458	-		GFF5087	0.65	-0.1
5,079,460	+		GFF5087	0.65	+0.6
5,079,460	+		GFF5087	0.65	-0.8
5,079,463	-		GFF5087	0.65	-0.4
5,079,463	-		GFF5087	0.65	-1.4
5,079,468	+		GFF5087	0.66	+0.5
5,079,468	-		GFF5087	0.66	+0.3
5,079,487	+		GFF5087	0.68	-0.3
5,079,523	-		GFF5087	0.71	-0.8
5,079,556	-		GFF5087	0.74	+0.2
5,079,568	+		GFF5087	0.76	+0.2
5,079,568	+		GFF5087	0.76	-2.2
5,079,568	+		GFF5087	0.76	-0.7
5,079,568	+		GFF5087	0.76	-0.2
5,079,568	+		GFF5087	0.76	-1.4
5,079,568	+		GFF5087	0.76	-0.1
5,079,568	+		GFF5087	0.76	-0.8
5,079,576	-		GFF5087	0.76	-0.0
5,079,576	-		GFF5087	0.76	-0.3
5,079,576	-		GFF5087	0.76	-0.5
5,079,576	-		GFF5087	0.76	-1.1
5,079,576	-		GFF5087	0.76	-1.5
5,079,576	-		GFF5087	0.76	-0.3
5,079,576	-		GFF5087	0.76	-2.2
5,079,576	-		GFF5087	0.76	-0.3
5,079,598	+		GFF5087	0.78	-0.6
5,079,606	-		GFF5087	0.79	+0.3
5,079,611	-		GFF5087	0.80	-1.4
5,079,625	-		GFF5087	0.81	-0.3
5,079,636	-		GFF5087	0.82	-2.1
5,079,638	+		GFF5087	0.82	-0.6
5,079,674	+		GFF5087	0.86	-1.2
5,079,674	+		GFF5087	0.86	-0.3
5,079,675	-		GFF5087	0.86	-2.2
5,079,682	-		GFF5087	0.87	+0.3
5,079,682	-		GFF5087	0.87	-0.1
5,079,682	-		GFF5087	0.87	-0.2
5,079,682	-		GFF5087	0.87	-1.2
5,079,687	-		GFF5087	0.87	-0.7
5,079,734	+				-1.3
5,079,739	-				-0.3
5,079,742	+				-1.7
5,079,750	-				-0.2
5,079,753	+				-1.6
5,079,757	+				+1.2
5,079,760	-				-1.8
5,079,765	-				-0.4
5,079,765	-				-2.5
5,079,765	-				-0.5
5,079,765	-				-0.3
5,079,765	-				-0.1
5,079,767	-				-1.6
5,079,777	-				-0.3
5,079,795	-				-0.8
5,079,797	+				-0.3
5,079,816	+				+0.4
5,079,846	+				-1.0
5,079,846	-				-0.2
5,079,927	+				+0.7
5,079,935	-				-3.5
5,079,935	-				+1.1
5,079,968	+		GFF5088	0.14	+0.2
5,079,976	-		GFF5088	0.16	-0.6
5,079,976	-		GFF5088	0.16	-0.3
5,079,978	+		GFF5088	0.17	-0.8
5,079,983	+		GFF5088	0.18	-1.1
5,079,988	+		GFF5088	0.20	-3.2
5,080,000	+		GFF5088	0.23	-1.1
5,080,002	+		GFF5088	0.24	-1.3
5,080,007	+		GFF5088	0.25	-0.6
5,080,008	-		GFF5088	0.25	-1.4
5,080,033	-		GFF5088	0.32	-0.4
5,080,033	-		GFF5088	0.32	+0.3
5,080,033	-		GFF5088	0.32	-2.2
5,080,033	-		GFF5088	0.32	-0.6
5,080,068	+		GFF5088	0.43	-2.5
5,080,076	-		GFF5088	0.45	-2.3
5,080,076	-		GFF5088	0.45	-2.2
5,080,076	-		GFF5088	0.45	+0.9
5,080,082	-		GFF5088	0.47	-0.7
5,080,082	-		GFF5088	0.47	-0.3
5,080,093	+		GFF5088	0.50	-0.5
5,080,093	+		GFF5088	0.50	-0.5
5,080,095	+		GFF5088	0.50	+0.4
5,080,095	+		GFF5088	0.50	-2.0
5,080,125	+		GFF5088	0.59	-0.9
5,080,125	+		GFF5088	0.59	+0.5
5,080,132	-		GFF5088	0.61	-0.7
5,080,133	-		GFF5088	0.61	-0.3
5,080,137	-		GFF5088	0.62	-1.7
5,080,174	-		GFF5088	0.73	-0.6
5,080,195	-		GFF5088	0.79	-0.2
5,080,197	+		GFF5088	0.80	-0.3
5,080,197	+		GFF5088	0.80	-1.6
5,080,204	+		GFF5088	0.82	-0.8
5,080,205	-		GFF5088	0.82	+0.6
5,080,218	-		GFF5088	0.86	-0.6
5,080,225	+		GFF5088	0.88	+0.7
5,080,234	-				-0.7
5,080,295	-				-1.2
5,080,317	+		GFF5089	0.13	-0.3
5,080,325	-		GFF5089	0.14	-1.9
5,080,327	+		GFF5089	0.14	-1.0
5,080,327	+		GFF5089	0.14	-1.3
5,080,335	-		GFF5089	0.15	-0.7
5,080,335	-		GFF5089	0.15	-0.7
5,080,346	+		GFF5089	0.17	-2.6
5,080,362	+		GFF5089	0.20	-1.3
5,080,370	+		GFF5089	0.21	-0.1
5,080,370	-		GFF5089	0.21	-1.4
5,080,383	-		GFF5089	0.23	-1.1
5,080,386	-		GFF5089	0.23	-1.2
5,080,387	-		GFF5089	0.24	-0.9
5,080,389	+		GFF5089	0.24	-1.5
5,080,389	+		GFF5089	0.24	+0.1
5,080,389	+		GFF5089	0.24	-1.2
5,080,394	+		GFF5089	0.25	+0.6
5,080,394	+		GFF5089	0.25	-1.5
5,080,397	-		GFF5089	0.25	-0.3
5,080,397	-		GFF5089	0.25	-0.7
5,080,402	-		GFF5089	0.26	-2.4
5,080,402	-		GFF5089	0.26	-0.5
5,080,402	-		GFF5089	0.26	+0.0
5,080,407	-		GFF5089	0.27	-0.5
5,080,413	-		GFF5089	0.28	-0.1
5,080,415	+		GFF5089	0.28	-3.8
5,080,423	-		GFF5089	0.29	-0.5
5,080,440	+		GFF5089	0.32	-0.1
5,080,440	+		GFF5089	0.32	-1.2
5,080,440	+		GFF5089	0.32	-0.3
5,080,440	+		GFF5089	0.32	-1.9
5,080,453	+		GFF5089	0.34	-0.6
5,080,472	-		GFF5089	0.37	-0.2
5,080,496	+		GFF5089	0.41	-0.5
5,080,505	+		GFF5089	0.42	-0.2
5,080,510	+		GFF5089	0.43	-1.3
5,080,528	+		GFF5089	0.46	-2.3
5,080,536	-		GFF5089	0.47	+0.7
5,080,536	-		GFF5089	0.47	-1.3
5,080,536	-		GFF5089	0.47	+0.3
5,080,544	+		GFF5089	0.48	+1.6
5,080,544	+		GFF5089	0.48	+0.4
5,080,554	+		GFF5089	0.50	-1.1
5,080,558	+		GFF5089	0.50	+0.2
5,080,562	-		GFF5089	0.51	-1.3
5,080,562	-		GFF5089	0.51	-0.1
5,080,566	-		GFF5089	0.52	-0.9
5,080,573	+		GFF5089	0.53	-0.7
5,080,573	+		GFF5089	0.53	-2.2
5,080,573	+		GFF5089	0.53	-0.7
5,080,573	+		GFF5089	0.53	-1.3
5,080,573	+		GFF5089	0.53	-0.4
5,080,573	+		GFF5089	0.53	-1.8
5,080,578	+		GFF5089	0.54	+0.2
5,080,581	-		GFF5089	0.54	+0.1
5,080,581	-		GFF5089	0.54	-1.0
5,080,581	-		GFF5089	0.54	+0.6
5,080,581	-		GFF5089	0.54	-0.5
5,080,583	+		GFF5089	0.54	-0.7
5,080,600	+		GFF5089	0.57	-1.5
5,080,600	+		GFF5089	0.57	-1.4
5,080,600	-		GFF5089	0.57	-0.9
5,080,605	+		GFF5089	0.58	-1.5
5,080,605	+		GFF5089	0.58	-1.8
5,080,605	+		GFF5089	0.58	-0.5
5,080,605	+		GFF5089	0.58	-1.6
5,080,608	-		GFF5089	0.58	-0.5
5,080,613	-		GFF5089	0.59	-0.1
5,080,613	-		GFF5089	0.59	-1.2
5,080,613	-		GFF5089	0.59	-0.5
5,080,613	-		GFF5089	0.59	-0.2
5,080,613	-		GFF5089	0.59	-0.9
5,080,619	-		GFF5089	0.60	-0.6
5,080,620	+		GFF5089	0.60	-0.2
5,080,620	+		GFF5089	0.60	-0.1
5,080,628	+		GFF5089	0.61	+0.4
5,080,628	-		GFF5089	0.61	-0.9
5,080,628	-		GFF5089	0.61	-1.8
5,080,628	-		GFF5089	0.61	-1.1
5,080,628	-		GFF5089	0.61	-1.9
5,080,630	-		GFF5089	0.62	-2.4
5,080,636	-		GFF5089	0.63	+1.3
5,080,636	-		GFF5089	0.63	+0.0
5,080,650	-		GFF5089	0.65	+0.1
5,080,692	-		GFF5089	0.71	-0.5
5,080,696	-		GFF5089	0.72	-0.9
5,080,699	+		GFF5089	0.72	+0.3
5,080,706	-		GFF5089	0.74	-0.3
5,080,707	-		GFF5089	0.74	-0.5
5,080,712	+		GFF5089	0.74	-0.4
5,080,712	+		GFF5089	0.74	+0.1
5,080,712	-		GFF5089	0.74	-0.2
5,080,718	+		GFF5089	0.75	-0.1
5,080,720	-		GFF5089	0.76	-1.1
5,080,725	+		GFF5089	0.77	-2.5
5,080,728	-		GFF5089	0.77	-1.0
5,080,738	-		GFF5089	0.79	+0.3
5,080,744	+		GFF5089	0.79	-0.9
5,080,750	+		GFF5089	0.80	-0.8
5,080,785	+		GFF5089	0.86	-1.0
5,080,785	+		GFF5089	0.86	-0.1
5,080,793	-		GFF5089	0.87	-1.3
5,080,793	-		GFF5089	0.87	+0.2
5,080,860	-				-0.5
5,080,864	+				+0.3
5,080,869	+				-0.4
5,080,869	+				-2.0
5,080,869	+				-1.0
5,080,869	+				+0.9
5,080,869	+				+0.3
5,080,875	+				-0.6
5,080,877	-				-0.5
5,080,877	-				-1.0
5,080,877	-				-1.9
5,080,877	-				-0.4
5,080,877	-				-2.3
5,080,877	-				-1.6
5,080,877	-				-0.6
5,080,877	-				+0.4
5,080,877	-				-0.2
5,080,877	-				+0.6
5,080,877	-				-0.3
5,080,879	-				-0.5
5,080,923	+				-0.3
5,080,923	+				-0.6
5,080,958	-				-1.7
5,080,958	-				+1.3
5,080,967	+				-2.2
5,080,967	+				-2.2
5,080,967	+				-0.2
5,080,967	+				-1.5
5,080,975	-				+0.6
5,081,037	-		GFF5090	0.15	-0.2
5,081,060	-		GFF5090	0.18	-2.7
5,081,060	-		GFF5090	0.18	-1.8
5,081,073	+		GFF5090	0.20	-2.5
5,081,075	-		GFF5090	0.20	-0.2
5,081,081	-		GFF5090	0.21	-0.3
5,081,081	-		GFF5090	0.21	-0.2
5,081,081	-		GFF5090	0.21	-3.6
5,081,081	-		GFF5090	0.21	-2.6
5,081,083	+		GFF5090	0.21	+0.3
5,081,083	+		GFF5090	0.21	-2.0
5,081,083	+		GFF5090	0.21	-1.1
5,081,091	-		GFF5090	0.22	+0.0
5,081,096	-		GFF5090	0.23	-1.5
5,081,106	+		GFF5090	0.24	-0.6
5,081,106	+		GFF5090	0.24	-0.7
5,081,106	+		GFF5090	0.24	-0.7
5,081,106	+		GFF5090	0.24	-0.4
5,081,106	+		GFF5090	0.24	-0.9
5,081,106	+		GFF5090	0.24	-0.5
5,081,106	+		GFF5090	0.24	+0.6
5,081,106	+		GFF5090	0.24	-1.7
5,081,106	+		GFF5090	0.24	-0.5
5,081,106	+		GFF5090	0.24	+0.5
5,081,106	+		GFF5090	0.24	+0.2
5,081,106	+		GFF5090	0.24	-1.9
5,081,106	+		GFF5090	0.24	+0.6
5,081,106	+		GFF5090	0.24	-1.5
5,081,106	+		GFF5090	0.24	+1.1
5,081,106	+		GFF5090	0.24	-0.3
5,081,106	+		GFF5090	0.24	-1.0
5,081,106	+		GFF5090	0.24	-0.3
5,081,106	+		GFF5090	0.24	-0.5
5,081,114	-		GFF5090	0.25	-0.9
5,081,114	-		GFF5090	0.25	-2.5
5,081,114	-		GFF5090	0.25	-2.6
5,081,114	-		GFF5090	0.25	-1.8
5,081,114	-		GFF5090	0.25	+0.9
5,081,114	-		GFF5090	0.25	-0.4
5,081,114	-		GFF5090	0.25	+0.6
5,081,114	-		GFF5090	0.25	-1.6
5,081,114	-		GFF5090	0.25	-2.9
5,081,114	-		GFF5090	0.25	-1.8
5,081,114	-		GFF5090	0.25	-3.1
5,081,114	-		GFF5090	0.25	-0.8
5,081,114	-		GFF5090	0.25	+1.1
5,081,114	-		GFF5090	0.25	-1.8
5,081,114	-		GFF5090	0.25	-1.9
5,081,116	+		GFF5090	0.26	-0.7
5,081,132	+		GFF5090	0.28	+0.8
5,081,132	+		GFF5090	0.28	-0.1
5,081,138	+		GFF5090	0.29	-0.0
5,081,146	-		GFF5090	0.30	-0.7
5,081,209	+		GFF5090	0.38	-1.9
5,081,214	+		GFF5090	0.39	-1.0
5,081,219	+		GFF5090	0.39	-1.6
5,081,249	+		GFF5090	0.43	-0.5
5,081,249	+		GFF5090	0.43	-1.7
5,081,249	+		GFF5090	0.43	-0.9
5,081,249	+		GFF5090	0.43	-0.5
5,081,249	+		GFF5090	0.43	+0.8
5,081,249	+		GFF5090	0.43	-0.2
5,081,249	+		GFF5090	0.43	-0.1
5,081,249	+		GFF5090	0.43	-1.4
5,081,249	+		GFF5090	0.43	+0.6
5,081,249	+		GFF5090	0.43	-0.9
5,081,249	+		GFF5090	0.43	-1.2
5,081,257	-		GFF5090	0.44	-2.7
5,081,257	-		GFF5090	0.44	+1.5
5,081,257	-		GFF5090	0.44	-1.9
5,081,257	-		GFF5090	0.44	+0.3
5,081,257	-		GFF5090	0.44	-0.6