Strain Fitness in Sphingobium sp. HT1-2 around GFF5070

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,065,730	+				+2.1
5,065,738	-				-0.7
5,065,743	-				-0.5
5,065,752	+				+0.1
5,065,752	+				-0.2
5,065,754	+				+0.0
5,065,754	+				-0.6
5,065,757	+				-0.8
5,065,757	+				-0.6
5,065,757	+				+0.2
5,065,757	+				+1.5
5,065,760	-				+0.6
5,065,762	-				-0.7
5,065,762	-				-1.0
5,065,762	-				+0.2
5,065,765	-				+0.5
5,065,765	-				-0.5
5,065,765	-				-0.5
5,065,765	-				+0.2
5,065,765	-				-1.2
5,065,765	-				-0.2
5,065,767	+				-0.3
5,065,770	-				-1.1
5,065,775	-				-1.7
5,065,793	+				+0.1
5,065,796	-				+0.2
5,065,824	+				+1.0
5,065,831	+				+0.7
5,065,843	+				-0.9
5,065,843	+				+0.6
5,065,851	-				+0.8
5,065,851	-				+0.1
5,065,851	-				-0.5
5,065,851	-				-0.2
5,065,853	+				-0.6
5,065,855	+				-0.5
5,065,857	+				+1.7
5,065,860	+				-1.9
5,065,860	+				-0.2
5,065,868	-				+1.0
5,065,873	-				+0.2
5,065,873	-				-0.9
5,065,873	-				+0.4
5,065,899	+				+0.7
5,065,915	-				-1.3
5,065,915	-				-0.3
5,065,917	-				+0.5
5,065,931	+				-1.9
5,065,936	+				-0.8
5,065,936	+				-0.1
5,065,936	+				+0.1
5,065,936	+				+0.7
5,065,936	+				-0.3
5,065,944	-				+1.4
5,065,949	-				+0.2
5,065,954	+				+0.0
5,065,954	+				+0.7
5,065,954	+				-0.3
5,065,955	+				+0.1
5,065,962	+				-0.1
5,065,962	-				+0.1
5,065,962	-				-0.4
5,065,962	-				+0.8
5,065,962	-				+0.3
5,065,963	-				-1.0
5,065,963	-				+0.2
5,065,964	+				-0.2
5,066,023	-				-0.0
5,066,028	-		GFF5069	0.10	+0.2
5,066,061	-		GFF5069	0.15	-0.3
5,066,071	-		GFF5069	0.17	-1.2
5,066,082	-		GFF5069	0.18	-0.7
5,066,088	+		GFF5069	0.19	+0.7
5,066,136	-		GFF5069	0.27	-1.8
5,066,136	-		GFF5069	0.27	+0.0
5,066,188	+		GFF5069	0.35	-1.5
5,066,241	-		GFF5069	0.43	+0.0
5,066,249	+		GFF5069	0.44	+0.7
5,066,251	+		GFF5069	0.44	-2.5
5,066,251	+		GFF5069	0.44	-0.2
5,066,257	-		GFF5069	0.45	+0.1
5,066,259	+		GFF5069	0.46	+0.5
5,066,259	+		GFF5069	0.46	-1.0
5,066,259	-		GFF5069	0.46	+0.9
5,066,271	+		GFF5069	0.47	+1.0
5,066,279	-		GFF5069	0.49	-0.3
5,066,292	+		GFF5069	0.51	+1.1
5,066,300	-		GFF5069	0.52	-0.4
5,066,337	+		GFF5069	0.58	+0.3
5,066,339	-		GFF5069	0.58	-1.5
5,066,360	+		GFF5069	0.61	+0.6
5,066,363	-		GFF5069	0.62	+0.7
5,066,365	+		GFF5069	0.62	-0.1
5,066,368	-		GFF5069	0.62	-1.5
5,066,373	-		GFF5069	0.63	-1.9
5,066,379	+		GFF5069	0.64	-0.3
5,066,379	+		GFF5069	0.64	-0.4
5,066,383	-		GFF5069	0.65	-0.5
5,066,383	-		GFF5069	0.65	-0.3
5,066,387	-		GFF5069	0.65	+0.5
5,066,414	+		GFF5069	0.69	-0.7
5,066,425	-		GFF5069	0.71	+0.6
5,066,427	+		GFF5069	0.71	-1.5
5,066,440	+		GFF5069	0.73	+0.5
5,066,452	+		GFF5069	0.75	-0.1
5,066,452	+		GFF5069	0.75	+0.3
5,066,460	+		GFF5069	0.76	-0.5
5,066,460	-		GFF5069	0.76	-1.1
5,066,460	-		GFF5069	0.76	+0.3
5,066,460	-		GFF5069	0.76	-0.7
5,066,460	-		GFF5069	0.76	-0.1
5,066,460	-		GFF5069	0.76	-1.5
5,066,460	-		GFF5069	0.76	-0.3
5,066,460	-		GFF5069	0.76	+0.8
5,066,472	-		GFF5069	0.78	-0.8
5,066,472	-		GFF5069	0.78	-1.9
5,066,524	+		GFF5069	0.86	-1.0
5,066,569	+				+0.2
5,066,582	-				-1.9
5,066,616	+				+0.2
5,066,616	+				+0.9
5,066,624	-				+1.6
5,066,658	-				+0.0
5,066,708	+				+0.4
5,066,711	+				+1.2
5,066,713	+				+0.2
5,066,726	-				+0.4
5,066,750	+				+0.8
5,066,750	+				+1.1
5,066,750	+				-0.4
5,066,758	-				-1.0
5,066,764	+				+0.8
5,066,789	+				-0.0
5,066,795	+				-0.4
5,066,797	-				+0.1
5,066,797	-				+1.3
5,066,822	+				-0.1
5,066,830	-				-0.5
5,066,844	+		GFF5070	0.11	+0.8
5,066,847	-		GFF5070	0.11	-0.6
5,066,852	+		GFF5070	0.11	-0.6
5,066,852	+		GFF5070	0.11	-0.0
5,066,852	-		GFF5070	0.11	-1.2
5,066,862	+		GFF5070	0.12	+1.1
5,066,869	+		GFF5070	0.13	+0.3
5,066,870	-		GFF5070	0.13	+0.1
5,066,885	+		GFF5070	0.14	-0.7
5,066,885	+		GFF5070	0.14	-1.9
5,066,885	+		GFF5070	0.14	-1.3
5,066,885	+		GFF5070	0.14	+0.3
5,066,889	-		GFF5070	0.15	-0.6
5,066,893	-		GFF5070	0.15	-1.2
5,066,893	-		GFF5070	0.15	-0.2
5,066,893	-		GFF5070	0.15	+0.1
5,066,893	-		GFF5070	0.15	-1.7
5,066,893	-		GFF5070	0.15	-1.3
5,066,910	+		GFF5070	0.16	-0.5
5,066,928	+		GFF5070	0.18	-0.4
5,066,935	+		GFF5070	0.19	-1.7
5,066,939	+		GFF5070	0.19	-0.1
5,066,950	+		GFF5070	0.20	+0.3
5,066,996	+		GFF5070	0.24	+0.1
5,066,996	+		GFF5070	0.24	+0.5
5,066,996	+		GFF5070	0.24	+0.4
5,067,004	-		GFF5070	0.25	-0.2
5,067,004	-		GFF5070	0.25	-0.1
5,067,006	+		GFF5070	0.25	+0.5
5,067,014	-		GFF5070	0.26	+0.4
5,067,033	+		GFF5070	0.27	+1.1
5,067,033	+		GFF5070	0.27	-0.1
5,067,043	+		GFF5070	0.28	+0.1
5,067,120	+		GFF5070	0.35	-0.8
5,067,125	-		GFF5070	0.35	-0.4
5,067,163	-		GFF5070	0.38	+0.6
5,067,174	-		GFF5070	0.39	-0.5
5,067,180	-		GFF5070	0.40	+0.4
5,067,180	-		GFF5070	0.40	+1.6
5,067,223	-		GFF5070	0.44	-0.7
5,067,230	+		GFF5070	0.44	+2.0
5,067,231	-		GFF5070	0.44	-0.6
5,067,268	+		GFF5070	0.48	-0.7
5,067,271	-		GFF5070	0.48	+0.5
5,067,278	-		GFF5070	0.48	+0.5
5,067,311	+		GFF5070	0.51	-0.7
5,067,317	-		GFF5070	0.52	-1.3
5,067,317	-		GFF5070	0.52	-0.7
5,067,320	-		GFF5070	0.52	-0.8
5,067,326	+		GFF5070	0.53	+0.2
5,067,326	+		GFF5070	0.53	+1.0
5,067,326	+		GFF5070	0.53	+0.7
5,067,326	+		GFF5070	0.53	-1.6
5,067,326	+		GFF5070	0.53	-0.1
5,067,343	+		GFF5070	0.54	-0.8
5,067,343	+		GFF5070	0.54	-0.0
5,067,343	+		GFF5070	0.54	+0.6
5,067,358	+		GFF5070	0.55	-0.7
5,067,366	-		GFF5070	0.56	-0.9
5,067,366	-		GFF5070	0.56	+0.4
5,067,366	-		GFF5070	0.56	+0.0
5,067,399	-		GFF5070	0.59	+0.0
5,067,402	+		GFF5070	0.59	+0.7
5,067,402	+		GFF5070	0.59	+1.2
5,067,410	-		GFF5070	0.60	+1.1
5,067,430	+		GFF5070	0.62	-2.0
5,067,430	+		GFF5070	0.62	-0.1
5,067,430	+		GFF5070	0.62	+0.4
5,067,430	+		GFF5070	0.62	-0.1
5,067,430	+		GFF5070	0.62	-0.3
5,067,430	+		GFF5070	0.62	+1.0
5,067,430	+		GFF5070	0.62	+0.8
5,067,430	+		GFF5070	0.62	-1.1
5,067,430	+		GFF5070	0.62	+0.2
5,067,430	+		GFF5070	0.62	-1.1
5,067,430	+		GFF5070	0.62	-0.4
5,067,430	+		GFF5070	0.62	-2.0
5,067,430	+		GFF5070	0.62	+0.7
5,067,430	+		GFF5070	0.62	-1.8
5,067,430	+		GFF5070	0.62	+0.1
5,067,430	+		GFF5070	0.62	+1.1
5,067,430	+		GFF5070	0.62	-0.1
5,067,430	+		GFF5070	0.62	-1.9
5,067,430	+		GFF5070	0.62	-1.2
5,067,430	+		GFF5070	0.62	+1.0
5,067,438	-		GFF5070	0.62	+0.8
5,067,438	-		GFF5070	0.62	+1.2
5,067,438	-		GFF5070	0.62	-0.4
5,067,438	-		GFF5070	0.62	+0.5
5,067,438	-		GFF5070	0.62	+0.3
5,067,438	-		GFF5070	0.62	-1.6
5,067,438	-		GFF5070	0.62	-2.1
5,067,438	-		GFF5070	0.62	-0.1
5,067,438	-		GFF5070	0.62	+0.1
5,067,438	-		GFF5070	0.62	-0.5
5,067,438	-		GFF5070	0.62	-0.3
5,067,438	-		GFF5070	0.62	-0.2
5,067,438	-		GFF5070	0.62	+0.5
5,067,438	-		GFF5070	0.62	+0.5
5,067,438	-		GFF5070	0.62	+0.6
5,067,438	-		GFF5070	0.62	+0.8
5,067,438	-		GFF5070	0.62	-1.0
5,067,438	-		GFF5070	0.62	+1.5
5,067,438	-		GFF5070	0.62	+0.7
5,067,438	-		GFF5070	0.62	-1.1
5,067,438	-		GFF5070	0.62	+0.0
5,067,438	-		GFF5070	0.62	+1.4
5,067,455	-		GFF5070	0.64	+1.0
5,067,474	-		GFF5070	0.66	+0.6
5,067,474	-		GFF5070	0.66	+1.1
5,067,474	-		GFF5070	0.66	+0.4
5,067,497	+		GFF5070	0.68	-1.1
5,067,498	-		GFF5070	0.68	+0.2
5,067,500	-		GFF5070	0.68	-0.7
5,067,505	-		GFF5070	0.68	+0.8
5,067,535	+		GFF5070	0.71	+0.8
5,067,560	+		GFF5070	0.73	+0.8
5,067,560	+		GFF5070	0.73	-1.8
5,067,568	-		GFF5070	0.74	-1.8
5,067,568	-		GFF5070	0.74	-0.8
5,067,577	+		GFF5070	0.74	-0.3
5,067,584	+		GFF5070	0.75	+0.0
5,067,589	+		GFF5070	0.76	-0.9
5,067,593	+		GFF5070	0.76	-0.8
5,067,593	+		GFF5070	0.76	+1.0
5,067,601	-		GFF5070	0.77	-0.4
5,067,601	-		GFF5070	0.77	+0.6
5,067,601	-		GFF5070	0.77	-1.7
5,067,608	+		GFF5070	0.77	+0.4
5,067,611	-		GFF5070	0.77	-1.8
5,067,618	-		GFF5070	0.78	+0.3
5,067,633	+		GFF5070	0.79	+0.6
5,067,635	+		GFF5070	0.80	+0.8
5,067,635	+		GFF5070	0.80	+0.8
5,067,635	+		GFF5070	0.80	-0.8
5,067,635	+		GFF5070	0.80	+0.4
5,067,641	-		GFF5070	0.80	+0.2
5,067,641	-		GFF5070	0.80	-0.2
5,067,643	-		GFF5070	0.80	-0.2
5,067,643	-		GFF5070	0.80	-0.8
5,067,646	-		GFF5070	0.81	-0.8
5,067,647	+		GFF5070	0.81	-0.9
5,067,665	+		GFF5070	0.82	-0.3
5,067,665	+		GFF5070	0.82	+0.8
5,067,665	+		GFF5070	0.82	+0.8
5,067,666	+		GFF5070	0.82	-0.7
5,067,666	+		GFF5070	0.82	+0.7
5,067,681	+		GFF5070	0.84	-2.6
5,067,694	+		GFF5070	0.85	+0.3
5,067,696	+		GFF5070	0.85	+0.5
5,067,712	+		GFF5070	0.86	+0.2
5,067,715	-		GFF5070	0.87	+1.0
5,067,715	-		GFF5070	0.87	-0.9
5,067,717	+		GFF5070	0.87	+0.4
5,067,725	-		GFF5070	0.87	+1.2
5,067,738	-		GFF5070	0.89	+0.3
5,067,741	+		GFF5070	0.89	+0.7
5,067,749	-		GFF5070	0.89	-0.8
5,068,174	+				-0.6
5,068,174	+				-0.2
5,068,175	+				+0.1
5,068,192	+				-0.2
5,068,200	+				+0.5
5,068,208	+				+0.1
5,068,225	+				-1.9
5,068,225	+				-1.1
5,068,260	+				-0.8
5,068,265	+				+1.0
5,068,270	+				+0.5
5,068,270	+				+0.1
5,068,283	-				-1.4
5,068,283	-				+1.2
5,068,283	-				+0.8
5,068,283	-				+1.0
5,068,292	-				+0.4
5,068,308	+				-0.4
5,068,308	+				-0.4
5,068,311	-				-0.7
5,068,311	-				+0.5
5,068,313	+				-0.5
5,068,313	+				+0.2
5,068,313	+				+1.1
5,068,316	-				+0.1
5,068,316	-				+0.8
5,068,316	-				-0.6
5,068,316	-				+0.1
5,068,316	-				+0.2
5,068,316	-				+0.0
5,068,316	-				-0.7
5,068,321	-				+0.9
5,068,321	-				-3.0
5,068,321	-				-0.3
5,068,324	+				-1.6
5,068,347	+				-0.8
5,068,347	+				+0.4
5,068,347	-				+1.9
5,068,355	-				-0.9
5,068,400	-				-2.7
5,068,403	+				-0.0
5,068,406	-				+0.5
5,068,406	-				-0.6
5,068,413	+				-0.0
5,068,413	+				-0.2
5,068,415	+				+2.5
5,068,422	+				-1.6
5,068,423	-				+0.1
5,068,423	-				-1.7
5,068,423	-				-0.6
5,068,424	-				+0.2
5,068,487	-		GFF5073	0.17	+1.3
5,068,502	-		GFF5073	0.19	+1.1
5,068,537	-		GFF5073	0.24	-0.2
5,068,537	-		GFF5073	0.24	+1.0
5,068,563	+		GFF5073	0.27	+1.0
5,068,563	-		GFF5073	0.27	+1.7
5,068,571	-		GFF5073	0.28	-0.5
5,068,591	-		GFF5073	0.31	-0.4
5,068,609	+		GFF5073	0.34	-0.8
5,068,618	-		GFF5073	0.35	-0.2
5,068,618	-		GFF5073	0.35	+1.5
5,068,627	+		GFF5073	0.36	+1.6
5,068,645	-		GFF5073	0.39	+0.1
5,068,645	-		GFF5073	0.39	-0.2
5,068,645	-		GFF5073	0.39	+0.3
5,068,645	-		GFF5073	0.39	+0.5
5,068,653	-		GFF5073	0.40	-0.7
5,068,671	-		GFF5073	0.42	-0.6
5,068,671	-		GFF5073	0.42	+1.2
5,068,671	-		GFF5073	0.42	-0.1
5,068,673	+		GFF5073	0.43	-2.0
5,068,681	+		GFF5073	0.44	+0.1
5,068,689	-		GFF5073	0.45	+0.5
5,068,689	-		GFF5073	0.45	-0.1
5,068,691	+		GFF5073	0.45	-2.1
5,068,691	+		GFF5073	0.45	+0.5
5,068,691	-		GFF5073	0.45	+0.2
5,068,741	+		GFF5073	0.52	+1.0
5,068,741	+		GFF5073	0.52	+0.7
5,068,741	+		GFF5073	0.52	+0.4
5,068,753	+		GFF5073	0.54	+0.8
5,068,761	+		GFF5073	0.55	+0.6
5,068,761	+		GFF5073	0.55	-1.8
5,068,816	+		GFF5073	0.63	-1.5
5,068,819	-		GFF5073	0.63	+0.4
5,068,861	+		GFF5073	0.69	-0.8
5,068,862	+		GFF5073	0.69	+0.5