Strain Fitness in Sphingobium sp. HT1-2 around GFF5051

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,046,792	-				+0.2
5,046,794	+				+0.7
5,046,802	-				+0.2
5,046,816	+				+0.3
5,046,895	+				-1.9
5,046,895	+				+0.2
5,046,905	+				-1.3
5,046,905	+				-2.2
5,046,905	+				-3.0
5,046,913	-				-1.4
5,046,913	-				-0.3
5,046,913	-				+0.2
5,046,919	+				+0.2
5,046,929	-				-1.5
5,046,937	-				+0.1
5,046,972	+				-0.8
5,046,976	+				-1.6
5,046,981	-				-0.3
5,046,986	+				-1.9
5,046,989	-				-0.8
5,046,989	-				-1.4
5,046,994	-				-1.7
5,046,994	-				+0.6
5,047,037	+		GFF5050	0.13	-1.4
5,047,069	+		GFF5050	0.17	-0.6
5,047,077	-		GFF5050	0.19	-0.6
5,047,078	-		GFF5050	0.19	-1.3
5,047,081	+		GFF5050	0.19	-1.5
5,047,142	+		GFF5050	0.28	-1.3
5,047,157	+		GFF5050	0.30	+0.9
5,047,157	+		GFF5050	0.30	+0.4
5,047,158	-		GFF5050	0.30	-0.4
5,047,165	-		GFF5050	0.31	+0.3
5,047,167	+		GFF5050	0.31	+0.6
5,047,167	+		GFF5050	0.31	+0.1
5,047,167	+		GFF5050	0.31	+1.0
5,047,169	+		GFF5050	0.32	-0.2
5,047,174	+		GFF5050	0.32	-1.4
5,047,183	+		GFF5050	0.34	-1.7
5,047,183	+		GFF5050	0.34	-0.1
5,047,192	+		GFF5050	0.35	-0.7
5,047,192	+		GFF5050	0.35	-0.2
5,047,192	+		GFF5050	0.35	-0.9
5,047,193	+		GFF5050	0.35	-1.0
5,047,193	+		GFF5050	0.35	-1.8
5,047,193	+		GFF5050	0.35	+0.8
5,047,193	+		GFF5050	0.35	-0.9
5,047,206	-		GFF5050	0.37	-0.2
5,047,206	-		GFF5050	0.37	-0.6
5,047,206	-		GFF5050	0.37	+0.2
5,047,206	-		GFF5050	0.37	-1.3
5,047,214	+		GFF5050	0.38	-0.7
5,047,214	+		GFF5050	0.38	-3.0
5,047,214	+		GFF5050	0.38	+1.0
5,047,222	-		GFF5050	0.39	-0.1
5,047,233	+		GFF5050	0.41	-0.4
5,047,237	-		GFF5050	0.41	+0.7
5,047,246	-		GFF5050	0.43	-1.1
5,047,247	-		GFF5050	0.43	-1.8
5,047,248	-		GFF5050	0.43	+0.2
5,047,253	+		GFF5050	0.44	-0.8
5,047,275	-		GFF5050	0.47	-0.3
5,047,285	-		GFF5050	0.48	-0.3
5,047,291	+		GFF5050	0.49	-2.6
5,047,291	+		GFF5050	0.49	+0.7
5,047,299	-		GFF5050	0.50	+0.5
5,047,299	-		GFF5050	0.50	-0.1
5,047,299	-		GFF5050	0.50	+0.5
5,047,299	-		GFF5050	0.50	+0.0
5,047,301	+		GFF5050	0.51	+0.1
5,047,301	+		GFF5050	0.51	+0.0
5,047,301	+		GFF5050	0.51	-3.0
5,047,301	+		GFF5050	0.51	-0.2
5,047,301	+		GFF5050	0.51	-0.5
5,047,354	-		GFF5050	0.58	+0.4
5,047,355	+		GFF5050	0.58	-0.5
5,047,356	-		GFF5050	0.59	-0.0
5,047,363	-		GFF5050	0.60	+1.2
5,047,363	-		GFF5050	0.60	-1.1
5,047,370	-		GFF5050	0.61	-0.2
5,047,384	+		GFF5050	0.63	+1.0
5,047,399	-		GFF5050	0.65	-0.5
5,047,400	+		GFF5050	0.65	-1.6
5,047,423	-		GFF5050	0.68	-1.1
5,047,423	-		GFF5050	0.68	-1.2
5,047,423	-		GFF5050	0.68	-1.6
5,047,438	+		GFF5050	0.70	-0.1
5,047,466	-		GFF5050	0.74	-1.9
5,047,481	-		GFF5050	0.76	+0.4
5,047,506	+		GFF5050	0.80	+1.0
5,047,506	+		GFF5050	0.80	-1.4
5,047,506	+		GFF5050	0.80	-0.3
5,047,510	+		GFF5050	0.81	+0.1
5,047,514	-		GFF5050	0.81	-2.6
5,047,529	+		GFF5050	0.83	-0.8
5,047,537	-		GFF5050	0.84	+0.2
5,047,542	-		GFF5050	0.85	+0.4
5,047,544	+		GFF5050	0.85	-0.3
5,047,544	+		GFF5050	0.85	-1.8
5,047,544	+		GFF5050	0.85	-1.7
5,047,552	-		GFF5050	0.87	+0.4
5,047,552	-		GFF5050	0.87	+0.2
5,047,558	-		GFF5050	0.87	-2.6
5,047,581	+				+0.6
5,047,589	-				+0.1
5,047,607	+				+0.8
5,047,638	-				+0.5
5,047,652	+				+0.3
5,047,654	+				-1.3
5,047,654	+				-1.5
5,047,654	+				+0.7
5,047,654	+				-0.8
5,047,654	-				-1.0
5,047,660	-				-0.3
5,047,662	-				-0.2
5,047,662	-				-0.3
5,047,692	+				+0.1
5,047,692	+				-1.7
5,047,692	+				-0.2
5,047,700	-				-0.2
5,047,700	-				+0.8
5,047,700	-				-2.6
5,047,742	-				-1.6
5,047,772	+				-1.5
5,047,775	-				+0.1
5,047,780	-				-1.5
5,047,787	+				-0.0
5,047,797	+				+0.8
5,047,810	-				+1.6
5,047,823	-				-0.8
5,047,823	-				-0.1
5,047,839	+		GFF5051	0.15	-1.1
5,047,851	+		GFF5051	0.18	+1.0
5,047,851	+		GFF5051	0.18	-0.3
5,047,885	-		GFF5051	0.29	-0.7
5,047,897	+		GFF5051	0.33	-0.9
5,047,914	+		GFF5051	0.38	-2.4
5,047,922	-		GFF5051	0.40	-0.9
5,047,939	-		GFF5051	0.46	-0.3
5,047,979	-		GFF5051	0.58	+0.1
5,047,979	-		GFF5051	0.58	-0.5
5,047,981	-		GFF5051	0.59	-0.9
5,047,986	-		GFF5051	0.60	-1.9
5,048,052	-		GFF5051	0.81	-0.9
5,048,059	+		GFF5051	0.83	+0.4
5,048,059	+		GFF5051	0.83	-1.6
5,048,064	+		GFF5051	0.85	-1.0
5,048,064	+		GFF5051	0.85	+0.9
5,048,064	+		GFF5051	0.85	-0.6
5,048,064	+		GFF5051	0.85	-1.2
5,048,064	+		GFF5051	0.85	-1.6
5,048,064	+		GFF5051	0.85	-0.1
5,048,064	+		GFF5051	0.85	-1.0
5,048,064	+		GFF5051	0.85	+0.2
5,048,065	+		GFF5051	0.85	+0.1
5,048,065	+		GFF5051	0.85	-1.3
5,048,067	+		GFF5051	0.86	-0.5
5,048,072	-		GFF5051	0.87	-0.8
5,048,072	-		GFF5051	0.87	-1.6
5,048,072	-		GFF5051	0.87	+0.7
5,048,072	-		GFF5051	0.87	-0.8
5,048,073	-		GFF5051	0.88	-0.6
5,048,073	-		GFF5051	0.88	+0.0
5,048,073	-		GFF5051	0.88	-0.2
5,048,073	-		GFF5051	0.88	+0.5
5,048,136	+				-0.2
5,048,139	-				-0.2
5,048,144	-				-1.5
5,048,145	-				+0.3
5,048,147	+				+0.7
5,048,162	+				+0.7
5,048,163	-				-0.9
5,048,163	-				-0.9
5,048,163	-				+0.1
5,048,175	+				-0.5
5,048,178	-				-0.0
5,048,180	+				-0.2
5,048,237	+		GFF5052	0.11	-1.8
5,048,240	-		GFF5052	0.11	-0.3
5,048,252	+		GFF5052	0.12	-1.5
5,048,274	-		GFF5052	0.15	-0.9
5,048,275	+		GFF5052	0.15	-1.6
5,048,275	+		GFF5052	0.15	+0.1
5,048,280	+		GFF5052	0.15	+0.4
5,048,298	+		GFF5052	0.17	-0.6
5,048,298	+		GFF5052	0.17	-1.3
5,048,298	+		GFF5052	0.17	-1.9
5,048,298	+		GFF5052	0.17	-0.5
5,048,298	+		GFF5052	0.17	-0.8
5,048,298	+		GFF5052	0.17	-0.0
5,048,298	+		GFF5052	0.17	+0.2
5,048,298	+		GFF5052	0.17	+1.0
5,048,298	+		GFF5052	0.17	-1.3
5,048,298	+		GFF5052	0.17	-0.1
5,048,298	+		GFF5052	0.17	+1.1
5,048,298	+		GFF5052	0.17	-0.3
5,048,306	-		GFF5052	0.18	+0.7
5,048,306	-		GFF5052	0.18	-2.5
5,048,306	-		GFF5052	0.18	-1.9
5,048,306	-		GFF5052	0.18	-1.3
5,048,306	-		GFF5052	0.18	+0.3
5,048,306	-		GFF5052	0.18	+0.2
5,048,306	-		GFF5052	0.18	-0.4
5,048,306	-		GFF5052	0.18	-2.3
5,048,308	-		GFF5052	0.19	-0.6
5,048,317	+		GFF5052	0.20	+0.2
5,048,325	-		GFF5052	0.20	-2.3
5,048,325	-		GFF5052	0.20	+0.3
5,048,325	-		GFF5052	0.20	-1.5
5,048,359	-		GFF5052	0.24	+0.3
5,048,363	-		GFF5052	0.25	-0.6
5,048,385	-		GFF5052	0.27	-0.9
5,048,385	-		GFF5052	0.27	-1.4
5,048,390	+		GFF5052	0.28	-0.9
5,048,390	+		GFF5052	0.28	-1.1
5,048,390	-		GFF5052	0.28	+0.6
5,048,390	-		GFF5052	0.28	-0.7
5,048,390	-		GFF5052	0.28	-1.8
5,048,398	+		GFF5052	0.29	-0.1
5,048,406	-		GFF5052	0.29	+0.4
5,048,407	-		GFF5052	0.30	+0.8
5,048,417	+		GFF5052	0.31	+0.2
5,048,422	+		GFF5052	0.31	-0.7
5,048,422	+		GFF5052	0.31	-2.0
5,048,422	+		GFF5052	0.31	-1.9
5,048,427	+		GFF5052	0.32	-0.2
5,048,430	-		GFF5052	0.32	-0.2
5,048,445	+		GFF5052	0.34	-0.1
5,048,462	+		GFF5052	0.36	-0.8
5,048,462	+		GFF5052	0.36	-0.2
5,048,465	-		GFF5052	0.36	-2.2
5,048,470	-		GFF5052	0.37	-1.1
5,048,502	+		GFF5052	0.40	-1.2
5,048,520	+		GFF5052	0.42	+0.3
5,048,520	+		GFF5052	0.42	-0.9
5,048,525	+		GFF5052	0.43	-0.1
5,048,525	+		GFF5052	0.43	-1.6
5,048,525	+		GFF5052	0.43	-0.1
5,048,525	+		GFF5052	0.43	-1.7
5,048,525	+		GFF5052	0.43	-0.4
5,048,528	-		GFF5052	0.43	+0.2
5,048,528	-		GFF5052	0.43	+0.1
5,048,533	-		GFF5052	0.44	-0.4
5,048,533	-		GFF5052	0.44	-0.3
5,048,533	-		GFF5052	0.44	+0.8
5,048,533	-		GFF5052	0.44	-1.5
5,048,538	-		GFF5052	0.44	-0.8
5,048,561	-		GFF5052	0.47	+0.7
5,048,563	+		GFF5052	0.47	+0.5
5,048,579	+		GFF5052	0.49	-1.6
5,048,586	+		GFF5052	0.49	-0.6
5,048,630	-		GFF5052	0.54	-1.2
5,048,630	-		GFF5052	0.54	-1.6
5,048,630	-		GFF5052	0.54	-0.7
5,048,652	+		GFF5052	0.57	-2.9
5,048,652	+		GFF5052	0.57	-2.2
5,048,652	+		GFF5052	0.57	+0.4
5,048,652	-		GFF5052	0.57	-1.0
5,048,652	-		GFF5052	0.57	-0.0
5,048,660	-		GFF5052	0.58	+0.4
5,048,674	-		GFF5052	0.59	-0.7
5,048,682	+		GFF5052	0.60	-1.7
5,048,687	+		GFF5052	0.61	-0.5
5,048,695	-		GFF5052	0.62	+0.7
5,048,695	-		GFF5052	0.62	-0.7
5,048,695	-		GFF5052	0.62	-0.7
5,048,719	-		GFF5052	0.64	-1.6
5,048,729	+		GFF5052	0.65	+0.9
5,048,729	+		GFF5052	0.65	-0.5
5,048,729	+		GFF5052	0.65	-0.2
5,048,729	+		GFF5052	0.65	-0.0
5,048,729	+		GFF5052	0.65	-0.7
5,048,729	+		GFF5052	0.65	+1.4
5,048,737	-		GFF5052	0.66	-0.7
5,048,737	-		GFF5052	0.66	-0.1
5,048,737	-		GFF5052	0.66	-0.9
5,048,737	-		GFF5052	0.66	-1.9
5,048,737	-		GFF5052	0.66	+0.9
5,048,737	-		GFF5052	0.66	-1.8
5,048,737	-		GFF5052	0.66	-0.7
5,048,737	-		GFF5052	0.66	+1.1
5,048,742	-		GFF5052	0.67	-1.7
5,048,761	+		GFF5052	0.69	+0.1
5,048,769	-		GFF5052	0.70	-0.2
5,048,769	-		GFF5052	0.70	-2.1
5,048,769	-		GFF5052	0.70	+0.6
5,048,776	+		GFF5052	0.71	-0.1
5,048,779	-		GFF5052	0.71	+0.4
5,048,779	-		GFF5052	0.71	-1.0
5,048,790	+		GFF5052	0.72	-1.0
5,048,828	+		GFF5052	0.76	-1.2
5,048,828	+		GFF5052	0.76	-1.3
5,048,828	+		GFF5052	0.76	-1.2
5,048,828	+		GFF5052	0.76	-0.5
5,048,836	-		GFF5052	0.77	-0.1
5,048,836	-		GFF5052	0.77	+0.7
5,048,836	-		GFF5052	0.77	-1.1
5,048,845	+		GFF5052	0.78	-1.5
5,048,852	-		GFF5052	0.79	+0.3
5,048,868	-		GFF5052	0.81	-1.7
5,048,875	+		GFF5052	0.82	-0.0
5,048,893	+		GFF5052	0.84	-0.8
5,048,921	-		GFF5052	0.87	+0.6
5,048,944	+		GFF5052	0.89	+0.2
5,048,952	-				-0.7
5,048,963	+				-1.4
5,048,963	+				-1.2
5,048,963	+				-0.6
5,048,963	+				-0.9
5,048,963	+				-0.4
5,048,963	+				-1.8
5,048,963	+				-0.4
5,048,963	+				-0.6
5,048,963	+				+0.4
5,048,963	+				-0.6
5,048,963	+				-0.1
5,048,963	+				+0.2
5,048,963	+				-0.3
5,048,963	+				+1.1
5,048,963	+				+0.2
5,048,963	+				-2.0
5,048,963	+				+0.2
5,048,963	+				-0.2
5,048,963	+				-2.0
5,048,963	+				-0.4
5,048,963	+				+0.2
5,048,963	+				+0.2
5,048,963	+				-0.4
5,048,963	+				-1.5
5,048,963	+				-0.2
5,048,963	+				+0.1
5,048,963	+				+0.3
5,048,971	-				-1.1
5,048,971	-				+1.8
5,048,971	-				-0.2
5,048,971	-				-1.9
5,048,971	-				+0.9
5,048,971	-				-1.4
5,048,971	-				-0.7
5,048,971	-				-1.3
5,048,971	-				-0.1
5,048,971	-				-1.9
5,048,971	-				+0.5
5,048,971	-				+1.6
5,048,971	-				-0.4
5,048,971	-				+0.3
5,048,971	-				-0.2
5,048,971	-				-1.6
5,048,971	-				-2.8
5,048,971	-				+0.6
5,048,971	-				+0.4
5,048,971	-				-2.1
5,048,971	-				-1.4
5,048,971	-				-0.3
5,048,971	-				+0.6
5,048,971	-				+0.2
5,048,971	-				-1.1
5,048,971	-				-1.0
5,048,971	-				-1.3
5,048,977	+				-1.3
5,048,982	+				-0.8
5,048,982	+				+0.5
5,048,990	-				-2.5
5,049,003	-				-2.0
5,049,009	-				+0.4
5,049,052	+				-1.2
5,049,053	+				+0.5
5,049,053	+				+0.7
5,049,053	+				-0.4
5,049,053	+				-0.2
5,049,053	+				+0.8
5,049,053	+				+0.6
5,049,053	+				-0.3
5,049,053	+				-0.4
5,049,053	+				-1.5
5,049,053	+				-0.5
5,049,056	-				+0.5
5,049,058	+				+0.4
5,049,058	+				-1.0
5,049,058	+				+0.0
5,049,058	+				-0.6
5,049,058	+				-0.5
5,049,058	+				-0.0
5,049,061	-				-2.1
5,049,061	-				-0.4
5,049,061	-				-0.2
5,049,066	-				+0.3
5,049,066	-				-1.2
5,049,066	-				-0.3
5,049,066	-				+0.3
5,049,066	-				+0.9
5,049,068	-				+0.6
5,049,080	+				+1.5
5,049,088	-		GFF5053	0.10	-1.4
5,049,088	-		GFF5053	0.10	+0.8
5,049,110	+		GFF5053	0.16	-1.7
5,049,110	+		GFF5053	0.16	-1.4
5,049,111	+		GFF5053	0.16	+1.6
5,049,111	+		GFF5053	0.16	-0.3
5,049,111	+		GFF5053	0.16	-0.6