Strain Fitness in Sphingobium sp. HT1-2 around GFF5028

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,019,386	-				-0.0
5,019,396	+				-2.7
5,019,424	-				-0.3
5,019,424	-				+0.4
5,019,439	+		GFF5027	0.10	+0.3
5,019,455	+		GFF5027	0.12	-0.1
5,019,475	-		GFF5027	0.14	-0.6
5,019,501	+		GFF5027	0.16	+0.7
5,019,506	+		GFF5027	0.17	-0.0
5,019,514	-		GFF5027	0.18	+0.5
5,019,534	+		GFF5027	0.20	+0.1
5,019,534	+		GFF5027	0.20	+0.1
5,019,542	-		GFF5027	0.21	+0.9
5,019,547	-		GFF5027	0.21	-0.1
5,019,576	+		GFF5027	0.24	-0.0
5,019,579	-		GFF5027	0.24	-0.4
5,019,584	-		GFF5027	0.25	+0.8
5,019,586	-		GFF5027	0.25	+0.9
5,019,589	+		GFF5027	0.25	+0.1
5,019,597	-		GFF5027	0.26	+1.4
5,019,597	-		GFF5027	0.26	-0.2
5,019,611	+		GFF5027	0.28	+0.7
5,019,619	-		GFF5027	0.28	+0.4
5,019,724	+		GFF5027	0.39	-1.3
5,019,732	-		GFF5027	0.40	+0.9
5,019,732	-		GFF5027	0.40	-0.5
5,019,732	-		GFF5027	0.40	+0.1
5,019,732	-		GFF5027	0.40	+0.1
5,019,732	-		GFF5027	0.40	+0.5
5,019,732	-		GFF5027	0.40	-1.8
5,019,735	+		GFF5027	0.40	+0.9
5,019,738	+		GFF5027	0.40	+0.4
5,019,746	-		GFF5027	0.41	+1.3
5,019,746	-		GFF5027	0.41	-0.8
5,019,786	-		GFF5027	0.45	-0.1
5,019,838	+		GFF5027	0.50	-1.2
5,019,850	+		GFF5027	0.52	-0.6
5,019,859	+		GFF5027	0.52	+1.0
5,019,859	+		GFF5027	0.52	-0.1
5,019,859	+		GFF5027	0.52	-0.0
5,019,859	+		GFF5027	0.52	-0.2
5,019,867	-		GFF5027	0.53	+0.1
5,019,877	-		GFF5027	0.54	+0.9
5,019,886	+		GFF5027	0.55	+1.0
5,019,886	+		GFF5027	0.55	-0.2
5,019,886	+		GFF5027	0.55	+1.3
5,019,894	-		GFF5027	0.56	-0.0
5,019,894	-		GFF5027	0.56	-0.1
5,019,896	+		GFF5027	0.56	+0.6
5,019,902	-		GFF5027	0.57	+0.4
5,019,902	-		GFF5027	0.57	+1.2
5,019,902	-		GFF5027	0.57	+0.9
5,019,926	+		GFF5027	0.59	+1.6
5,019,934	-		GFF5027	0.60	-0.1
5,019,934	-		GFF5027	0.60	+0.1
5,019,936	-		GFF5027	0.60	+0.1
5,019,945	-		GFF5027	0.61	+0.2
5,019,973	-		GFF5027	0.64	+0.3
5,019,975	+		GFF5027	0.64	+0.4
5,019,975	+		GFF5027	0.64	-1.5
5,019,993	+		GFF5027	0.66	+0.9
5,020,030	+		GFF5027	0.70	+0.7
5,020,030	+		GFF5027	0.70	-0.7
5,020,035	+		GFF5027	0.70	-0.7
5,020,035	+		GFF5027	0.70	-0.0
5,020,038	-		GFF5027	0.70	-0.5
5,020,038	-		GFF5027	0.70	+1.2
5,020,038	-		GFF5027	0.70	-1.5
5,020,040	+		GFF5027	0.71	-2.3
5,020,040	+		GFF5027	0.71	-0.5
5,020,040	+		GFF5027	0.71	+1.7
5,020,040	+		GFF5027	0.71	+0.4
5,020,040	+		GFF5027	0.71	+0.6
5,020,040	+		GFF5027	0.71	-0.2
5,020,040	+		GFF5027	0.71	+0.7
5,020,040	+		GFF5027	0.71	+0.8
5,020,040	+		GFF5027	0.71	-0.2
5,020,043	-		GFF5027	0.71	-1.2
5,020,043	-		GFF5027	0.71	-1.9
5,020,048	-		GFF5027	0.71	+0.6
5,020,048	-		GFF5027	0.71	-0.7
5,020,048	-		GFF5027	0.71	-0.2
5,020,048	-		GFF5027	0.71	+1.5
5,020,048	-		GFF5027	0.71	+1.0
5,020,048	-		GFF5027	0.71	+0.1
5,020,048	-		GFF5027	0.71	+0.3
5,020,048	-		GFF5027	0.71	-1.7
5,020,048	-		GFF5027	0.71	+0.0
5,020,049	+		GFF5027	0.71	-0.7
5,020,049	+		GFF5027	0.71	-1.1
5,020,049	+		GFF5027	0.71	-0.1
5,020,049	-		GFF5027	0.71	-0.2
5,020,049	-		GFF5027	0.71	-0.6
5,020,055	-		GFF5027	0.72	-0.1
5,020,057	-		GFF5027	0.72	-0.0
5,020,074	-		GFF5027	0.74	-0.4
5,020,074	-		GFF5027	0.74	+0.5
5,020,074	-		GFF5027	0.74	-0.7
5,020,146	-		GFF5027	0.81	+0.6
5,020,168	+		GFF5027	0.83	-0.9
5,020,171	-		GFF5027	0.84	+1.2
5,020,176	-		GFF5027	0.84	-0.2
5,020,176	-		GFF5027	0.84	-0.3
5,020,185	-		GFF5027	0.85	+0.9
5,020,194	+		GFF5027	0.86	-0.0
5,020,199	+		GFF5027	0.87	+0.3
5,020,199	+		GFF5027	0.87	-0.7
5,020,199	+		GFF5027	0.87	-1.7
5,020,199	+		GFF5027	0.87	-0.3
5,020,199	+		GFF5027	0.87	-0.2
5,020,199	+		GFF5027	0.87	+1.1
5,020,200	-		GFF5027	0.87	+0.4
5,020,201	+		GFF5027	0.87	+1.0
5,020,201	+		GFF5027	0.87	+0.6
5,020,201	+		GFF5027	0.87	+0.8
5,020,201	+		GFF5027	0.87	-0.5
5,020,202	-		GFF5027	0.87	+0.4
5,020,207	-		GFF5027	0.87	-1.3
5,020,207	-		GFF5027	0.87	-1.4
5,020,207	-		GFF5027	0.87	-1.4
5,020,207	-		GFF5027	0.87	-0.8
5,020,207	-		GFF5027	0.87	+0.8
5,020,207	-		GFF5027	0.87	-1.5
5,020,207	-		GFF5027	0.87	+1.3
5,020,209	-		GFF5027	0.88	-0.2
5,020,209	-		GFF5027	0.88	-0.0
5,020,209	-		GFF5027	0.88	-0.5
5,020,209	-		GFF5027	0.88	+0.1
5,020,209	-		GFF5027	0.88	-0.1
5,020,209	-		GFF5027	0.88	-0.7
5,020,209	-		GFF5027	0.88	+0.3
5,020,217	-		GFF5027	0.88	-0.2
5,020,217	-		GFF5027	0.88	+0.4
5,020,224	+		GFF5027	0.89	+1.0
5,020,224	+		GFF5027	0.89	+0.5
5,020,232	-		GFF5027	0.90	+1.1
5,020,242	-				+0.7
5,020,266	-				-0.5
5,020,282	+				+1.0
5,020,284	-				+0.1
5,020,285	-				+0.5
5,020,296	+				+1.1
5,020,296	-				+0.8
5,020,362	-				+0.8
5,020,386	+				+0.5
5,020,386	+				-0.2
5,020,394	-				+1.1
5,020,412	+				-0.2
5,020,412	+				-0.5
5,020,412	+				+0.9
5,020,420	-				+2.1
5,020,420	-				-1.4
5,020,420	-				+0.0
5,020,433	-				+0.1
5,020,438	-				+0.9
5,020,446	-		GFF5028	0.10	-0.1
5,020,489	-		GFF5028	0.16	-1.7
5,020,489	-		GFF5028	0.16	-0.7
5,020,510	+		GFF5028	0.18	+0.1
5,020,510	+		GFF5028	0.18	-2.6
5,020,510	+		GFF5028	0.18	-0.5
5,020,510	+		GFF5028	0.18	+0.7
5,020,510	+		GFF5028	0.18	+1.9
5,020,518	-		GFF5028	0.19	-0.5
5,020,518	-		GFF5028	0.19	+0.5
5,020,518	-		GFF5028	0.19	-0.3
5,020,528	-		GFF5028	0.21	+0.5
5,020,534	+		GFF5028	0.21	-0.8
5,020,534	+		GFF5028	0.21	+0.7
5,020,534	+		GFF5028	0.21	-0.8
5,020,534	+		GFF5028	0.21	+1.6
5,020,542	-		GFF5028	0.22	-0.9
5,020,544	-		GFF5028	0.23	+0.1
5,020,552	-		GFF5028	0.24	+0.8
5,020,577	+		GFF5028	0.27	+0.1
5,020,579	+		GFF5028	0.27	+0.9
5,020,585	-		GFF5028	0.28	+0.9
5,020,587	-		GFF5028	0.28	+0.4
5,020,591	+		GFF5028	0.28	-1.5
5,020,591	+		GFF5028	0.28	-0.2
5,020,599	-		GFF5028	0.29	+0.3
5,020,599	-		GFF5028	0.29	-0.5
5,020,599	-		GFF5028	0.29	+0.7
5,020,599	-		GFF5028	0.29	-2.0
5,020,601	+		GFF5028	0.30	-0.4
5,020,604	-		GFF5028	0.30	+0.2
5,020,604	-		GFF5028	0.30	-0.6
5,020,619	+		GFF5028	0.32	-0.0
5,020,627	-		GFF5028	0.33	+0.2
5,020,632	+		GFF5028	0.33	+1.3
5,020,632	+		GFF5028	0.33	+1.5
5,020,632	-		GFF5028	0.33	+0.8
5,020,635	+		GFF5028	0.34	+0.6
5,020,635	+		GFF5028	0.34	-1.1
5,020,642	-		GFF5028	0.35	+0.7
5,020,660	-		GFF5028	0.37	-1.5
5,020,662	+		GFF5028	0.37	-0.7
5,020,665	+		GFF5028	0.38	-1.7
5,020,665	-		GFF5028	0.38	-0.6
5,020,673	-		GFF5028	0.39	+0.9
5,020,767	-		GFF5028	0.50	+0.4
5,020,775	+		GFF5028	0.51	+1.1
5,020,779	+		GFF5028	0.52	+0.1
5,020,807	-		GFF5028	0.55	-0.5
5,020,889	+		GFF5028	0.65	-0.1
5,020,891	+		GFF5028	0.66	-0.0
5,020,897	-		GFF5028	0.66	-0.8
5,020,897	-		GFF5028	0.66	-1.1
5,020,897	-		GFF5028	0.66	-1.3
5,020,897	-		GFF5028	0.66	+0.2
5,020,899	-		GFF5028	0.67	-0.4
5,020,899	-		GFF5028	0.67	+0.5
5,020,917	-		GFF5028	0.69	+0.2
5,020,923	+		GFF5028	0.70	+0.2
5,020,924	-		GFF5028	0.70	+1.1
5,020,931	-		GFF5028	0.71	-0.2
5,020,941	+		GFF5028	0.72	+0.6
5,020,950	+		GFF5028	0.73	+0.9
5,020,999	-		GFF5028	0.79	+0.0
5,020,999	-		GFF5028	0.79	-1.3
5,020,999	-		GFF5028	0.79	+1.0
5,021,009	-		GFF5028	0.80	-2.3
5,021,025	+		GFF5028	0.82	+0.2
5,021,064	+		GFF5028	0.87	+0.4
5,021,065	-		GFF5028	0.87	-0.8
5,021,072	-		GFF5028	0.88	+0.5
5,021,079	-		GFF5028	0.89	-0.1
5,021,087	+				+0.3
5,021,091	+				-1.8
5,021,095	-				+0.9
5,021,116	-				-0.3
5,021,140	-				-0.2
5,021,145	-				+0.9
5,021,152	+				-0.3
5,021,170	-				-0.1
5,021,191	-				-0.2
5,021,206	-				-0.1
5,021,214	-				+1.3
5,021,214	-				+1.4
5,021,253	-				+1.4
5,021,266	-				+0.2
5,021,273	+				-0.0
5,021,286	-				-0.9
5,021,290	-				+0.7
5,021,292	-				+0.9
5,021,298	+				+0.3
5,021,316	-		GFF5029	0.11	-0.8
5,021,324	-		GFF5029	0.12	-1.4
5,021,326	-		GFF5029	0.12	+0.3
5,021,330	+		GFF5029	0.12	-1.8
5,021,338	-		GFF5029	0.13	+0.7
5,021,338	-		GFF5029	0.13	-0.7
5,021,353	+		GFF5029	0.14	+0.2
5,021,374	+		GFF5029	0.17	+0.5
5,021,388	-		GFF5029	0.18	-0.6
5,021,447	+		GFF5029	0.24	-0.3
5,021,448	+		GFF5029	0.24	-1.2
5,021,523	-		GFF5029	0.31	+0.1
5,021,524	+		GFF5029	0.31	-0.0
5,021,524	+		GFF5029	0.31	+0.1
5,021,532	-		GFF5029	0.32	+0.2
5,021,532	-		GFF5029	0.32	-2.0
5,021,534	+		GFF5029	0.32	-0.5
5,021,534	+		GFF5029	0.32	-0.5
5,021,542	-		GFF5029	0.33	-2.1
5,021,544	+		GFF5029	0.33	-0.0
5,021,547	-		GFF5029	0.34	-0.2
5,021,547	-		GFF5029	0.34	+0.3
5,021,552	-		GFF5029	0.34	-0.6
5,021,552	-		GFF5029	0.34	+0.8
5,021,552	-		GFF5029	0.34	-2.0
5,021,557	-		GFF5029	0.35	+0.4
5,021,557	-		GFF5029	0.35	-0.1
5,021,562	+		GFF5029	0.35	-0.4
5,021,594	-		GFF5029	0.38	+0.5
5,021,612	+		GFF5029	0.40	-0.2
5,021,612	+		GFF5029	0.40	+0.2
5,021,620	-		GFF5029	0.41	+0.1
5,021,626	+		GFF5029	0.42	-2.5
5,021,634	-		GFF5029	0.42	+0.8
5,021,644	+		GFF5029	0.43	+0.3
5,021,665	-		GFF5029	0.45	-0.7
5,021,667	+		GFF5029	0.46	-1.3
5,021,667	+		GFF5029	0.46	-0.4
5,021,675	-		GFF5029	0.46	-0.4
5,021,675	-		GFF5029	0.46	+0.6
5,021,730	-		GFF5029	0.52	+0.9
5,021,744	+		GFF5029	0.53	+0.1
5,021,747	-		GFF5029	0.54	+0.9
5,021,759	+		GFF5029	0.55	-0.5
5,021,767	-		GFF5029	0.56	-0.0
5,021,767	-		GFF5029	0.56	-2.5
5,021,767	-		GFF5029	0.56	+0.8
5,021,767	-		GFF5029	0.56	-0.3
5,021,767	-		GFF5029	0.56	-1.0
5,021,795	+		GFF5029	0.58	-0.4
5,021,799	-		GFF5029	0.59	-2.2
5,021,803	+		GFF5029	0.59	-0.4
5,021,806	+		GFF5029	0.59	-0.9
5,021,808	+		GFF5029	0.60	-0.7
5,021,809	-		GFF5029	0.60	+0.5
5,021,816	-		GFF5029	0.60	+0.1
5,021,816	-		GFF5029	0.60	-3.4
5,021,848	+		GFF5029	0.64	-0.1
5,021,854	+		GFF5029	0.64	-0.1
5,021,855	+		GFF5029	0.64	+1.2
5,021,855	+		GFF5029	0.64	-1.4
5,021,856	-		GFF5029	0.64	+1.0
5,021,863	-		GFF5029	0.65	-0.4
5,021,930	+		GFF5029	0.72	-1.2
5,021,933	-		GFF5029	0.72	-0.1
5,021,941	+		GFF5029	0.73	+1.1
5,021,966	+		GFF5029	0.75	+1.2
5,021,974	-		GFF5029	0.76	-0.1
5,021,974	-		GFF5029	0.76	+0.9
5,021,974	-		GFF5029	0.76	+1.5
5,021,974	-		GFF5029	0.76	-1.6
5,021,974	-		GFF5029	0.76	-0.1
5,021,976	+		GFF5029	0.76	-0.2
5,021,976	+		GFF5029	0.76	-0.2
5,021,976	-		GFF5029	0.76	-0.3
5,021,984	-		GFF5029	0.77	-0.2
5,021,989	-		GFF5029	0.78	-0.3
5,022,027	-		GFF5029	0.81	-0.6
5,022,043	+		GFF5029	0.83	-0.5
5,022,046	-		GFF5029	0.83	+0.7
5,022,061	-		GFF5029	0.85	-0.0
5,022,064	+		GFF5029	0.85	-0.2
5,022,070	+		GFF5029	0.86	-0.3
5,022,071	-		GFF5029	0.86	-0.2
5,022,085	+		GFF5029	0.87	-0.7
5,022,085	+		GFF5029	0.87	-1.4
5,022,085	+		GFF5029	0.87	-2.1
5,022,087	+		GFF5029	0.87	-0.0
5,022,093	-		GFF5029	0.88	-0.2
5,022,093	-		GFF5029	0.88	-3.1
5,022,093	-		GFF5029	0.88	+1.1
5,022,093	-		GFF5029	0.88	-0.5
5,022,093	-		GFF5029	0.88	-0.4
5,022,117	-				+1.6
5,022,121	-				+0.4
5,022,129	-				+1.0
5,022,148	+				-1.9
5,022,148	-				-1.6
5,022,156	-				-0.3