Strain Fitness in Sphingobium sp. HT1-2 around GFF5024

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,015,438	-		GFF5023	0.45	-0.1
5,015,438	-		GFF5023	0.45	+0.1
5,015,456	+		GFF5023	0.46	-0.3
5,015,457	-		GFF5023	0.46	-2.2
5,015,462	-		GFF5023	0.46	+0.5
5,015,462	-		GFF5023	0.46	-0.6
5,015,469	+		GFF5023	0.47	-0.2
5,015,469	-		GFF5023	0.47	+0.7
5,015,470	+		GFF5023	0.47	-0.4
5,015,477	-		GFF5023	0.47	+1.1
5,015,477	-		GFF5023	0.47	-0.2
5,015,526	-		GFF5023	0.50	-0.3
5,015,527	-		GFF5023	0.50	+1.4
5,015,527	-		GFF5023	0.50	+1.4
5,015,534	-		GFF5023	0.51	+0.5
5,015,549	+		GFF5023	0.52	-1.1
5,015,575	+		GFF5023	0.53	-1.0
5,015,575	+		GFF5023	0.53	+0.2
5,015,575	-		GFF5023	0.53	-2.7
5,015,583	-		GFF5023	0.54	+0.7
5,015,583	-		GFF5023	0.54	+0.4
5,015,604	-		GFF5023	0.55	-0.7
5,015,622	+		GFF5023	0.56	-0.8
5,015,622	+		GFF5023	0.56	+2.2
5,015,657	-		GFF5023	0.58	-2.2
5,015,658	+		GFF5023	0.58	-1.0
5,015,661	+		GFF5023	0.58	+0.8
5,015,664	-		GFF5023	0.59	+0.9
5,015,664	-		GFF5023	0.59	-1.5
5,015,691	+		GFF5023	0.60	+0.9
5,015,699	-		GFF5023	0.61	+0.1
5,015,699	-		GFF5023	0.61	-0.6
5,015,699	-		GFF5023	0.61	+0.9
5,015,700	-		GFF5023	0.61	+1.8
5,015,700	-		GFF5023	0.61	-0.5
5,015,749	+		GFF5023	0.64	-0.7
5,015,749	+		GFF5023	0.64	+1.1
5,015,749	+		GFF5023	0.64	-0.4
5,015,749	+		GFF5023	0.64	-1.6
5,015,754	+		GFF5023	0.64	+1.0
5,015,754	+		GFF5023	0.64	+0.1
5,015,754	+		GFF5023	0.64	-0.5
5,015,754	+		GFF5023	0.64	-0.1
5,015,754	+		GFF5023	0.64	-0.9
5,015,754	+		GFF5023	0.64	-0.2
5,015,757	-		GFF5023	0.64	+0.8
5,015,757	-		GFF5023	0.64	+0.4
5,015,761	-		GFF5023	0.65	-0.3
5,015,762	-		GFF5023	0.65	-1.8
5,015,762	-		GFF5023	0.65	+0.7
5,015,762	-		GFF5023	0.65	+0.2
5,015,793	-		GFF5023	0.67	+0.1
5,015,803	+		GFF5023	0.67	-1.0
5,015,803	+		GFF5023	0.67	-1.0
5,015,834	+		GFF5023	0.69	+0.4
5,015,834	+		GFF5023	0.69	-0.6
5,015,834	+		GFF5023	0.69	+0.4
5,015,834	+		GFF5023	0.69	-0.8
5,015,834	+		GFF5023	0.69	+0.1
5,015,834	+		GFF5023	0.69	-0.1
5,015,834	+		GFF5023	0.69	+0.4
5,015,834	+		GFF5023	0.69	-1.7
5,015,834	+		GFF5023	0.69	+0.1
5,015,834	+		GFF5023	0.69	-0.4
5,015,834	+		GFF5023	0.69	+0.2
5,015,834	+		GFF5023	0.69	+1.0
5,015,834	+		GFF5023	0.69	+1.9
5,015,834	+		GFF5023	0.69	-1.4
5,015,834	+		GFF5023	0.69	+0.5
5,015,834	+		GFF5023	0.69	-0.3
5,015,834	+		GFF5023	0.69	-0.8
5,015,834	+		GFF5023	0.69	+0.8
5,015,834	+		GFF5023	0.69	-2.2
5,015,834	+		GFF5023	0.69	+1.5
5,015,834	+		GFF5023	0.69	-0.8
5,015,839	+		GFF5023	0.69	+0.1
5,015,839	+		GFF5023	0.69	+0.2
5,015,839	+		GFF5023	0.69	-0.5
5,015,842	-		GFF5023	0.70	-0.1
5,015,842	-		GFF5023	0.70	+0.8
5,015,842	-		GFF5023	0.70	+0.9
5,015,842	-		GFF5023	0.70	+0.3
5,015,842	-		GFF5023	0.70	+0.2
5,015,842	-		GFF5023	0.70	+0.4
5,015,842	-		GFF5023	0.70	-1.4
5,015,842	-		GFF5023	0.70	+1.2
5,015,842	-		GFF5023	0.70	-0.0
5,015,842	-		GFF5023	0.70	-0.8
5,015,842	-		GFF5023	0.70	+0.2
5,015,842	-		GFF5023	0.70	-1.0
5,015,842	-		GFF5023	0.70	+1.3
5,015,842	-		GFF5023	0.70	-0.5
5,015,842	-		GFF5023	0.70	-0.4
5,015,842	-		GFF5023	0.70	+0.8
5,015,844	+		GFF5023	0.70	+0.6
5,015,847	-		GFF5023	0.70	+0.2
5,015,868	+		GFF5023	0.71	-0.5
5,015,880	+		GFF5023	0.72	+0.6
5,015,916	-		GFF5023	0.74	-0.0
5,015,916	-		GFF5023	0.74	-0.5
5,015,916	-		GFF5023	0.74	-0.8
5,015,957	+		GFF5023	0.77	-1.5
5,015,970	-		GFF5023	0.77	-0.7
5,015,970	-		GFF5023	0.77	+0.3
5,015,970	-		GFF5023	0.77	+0.7
5,015,975	+		GFF5023	0.78	+0.3
5,015,983	-		GFF5023	0.78	-0.9
5,015,994	+		GFF5023	0.79	-0.3
5,015,994	+		GFF5023	0.79	-0.5
5,016,031	+		GFF5023	0.81	+0.2
5,016,049	-		GFF5023	0.82	-0.2
5,016,059	-		GFF5023	0.83	-0.5
5,016,064	+		GFF5023	0.83	-0.6
5,016,069	-		GFF5023	0.84	-0.4
5,016,085	+		GFF5023	0.85	-0.3
5,016,099	-		GFF5023	0.85	+0.9
5,016,115	+		GFF5023	0.86	+1.1
5,016,115	+		GFF5023	0.86	-0.3
5,016,123	-		GFF5023	0.87	+0.8
5,016,123	-		GFF5023	0.87	+0.2
5,016,150	-		GFF5023	0.88	-0.5
5,016,167	+		GFF5023	0.90	+0.2
5,016,167	+		GFF5023	0.90	+0.0
5,016,175	-				+1.1
5,016,177	+				+0.3
5,016,182	+				+0.1
5,016,205	+				+0.3
5,016,210	+				-0.7
5,016,210	+				-0.2
5,016,255	+				+0.8
5,016,263	-				+0.9
5,016,275	+				+0.5
5,016,277	+				-2.0
5,016,283	+				-0.4
5,016,285	+				+0.5
5,016,292	+				-0.6
5,016,292	+				+0.3
5,016,293	-				+0.2
5,016,300	-				-0.7
5,016,302	-				-0.4
5,016,309	-				+0.8
5,016,345	+				+0.5
5,016,345	+				-0.1
5,016,353	-				+0.9
5,016,375	+				-0.6
5,016,377	+				+0.6
5,016,406	+				-1.2
5,016,459	+		GFF5024	0.35	+0.1
5,016,461	+		GFF5024	0.37	-0.2
5,016,461	+		GFF5024	0.37	-1.2
5,016,467	-		GFF5024	0.40	+0.9
5,016,467	-		GFF5024	0.40	+0.5
5,016,516	-		GFF5024	0.66	+0.0
5,016,521	+		GFF5024	0.69	-1.8
5,016,522	-		GFF5024	0.69	+0.1
5,016,527	+		GFF5024	0.72	-0.4
5,016,535	-		GFF5024	0.76	-0.1
5,016,535	-		GFF5024	0.76	+0.4
5,016,549	+		GFF5024	0.84	+0.5
5,016,552	-		GFF5024	0.85	-0.0
5,016,552	-		GFF5024	0.85	-0.3
5,016,553	+		GFF5024	0.86	-0.2
5,016,553	+		GFF5024	0.86	-0.7
5,016,557	-		GFF5024	0.88	-1.7
5,016,566	-				-1.1
5,016,581	-				+0.1
5,016,654	+				+1.0
5,016,659	+				+1.1
5,016,662	-				-0.2
5,016,664	+				-1.1
5,016,667	-				+0.3
5,016,667	-				+0.8
5,016,669	+				-1.6
5,016,686	+				-1.5
5,016,686	+				-0.7
5,016,694	-				+0.8
5,016,694	-				+0.5
5,016,703	+				-0.4
5,016,708	+				-0.5
5,016,716	-				+1.2
5,016,716	-				+0.6
5,016,719	+				-1.5
5,016,721	-				-1.4
5,016,726	-				+0.5
5,016,772	+				+0.2
5,016,772	+				+1.2
5,016,772	+				+1.1
5,016,780	-				+1.3
5,016,831	-				-1.5
5,016,845	+				-0.8
5,016,845	+				+0.3
5,016,853	-				-0.0
5,016,853	-				-0.7
5,016,888	+				-1.0
5,016,888	+				+0.6
5,016,888	+				+0.3
5,016,896	-				-0.3
5,016,904	-				+0.7
5,016,923	+				-0.6
5,016,923	+				-0.1
5,016,947	+				+1.1
5,016,953	+				+0.2
5,016,953	-				+1.2
5,016,955	-				-0.2
5,016,963	+				+0.8
5,016,963	+				+0.8
5,016,966	-				+1.1
5,016,966	-				-2.2
5,016,971	-		GFF5025	0.11	+0.2
5,016,971	-		GFF5025	0.11	-1.7
5,016,971	-		GFF5025	0.11	+1.3
5,017,000	-		GFF5025	0.22	+0.5
5,017,004	-		GFF5025	0.23	-2.0
5,017,014	-		GFF5025	0.26	-2.0
5,017,059	+		GFF5025	0.42	+2.6
5,017,072	-		GFF5025	0.47	-1.6
5,017,075	+		GFF5025	0.48	+0.9
5,017,075	+		GFF5025	0.48	-0.3
5,017,083	-		GFF5025	0.50	-0.6
5,017,095	+		GFF5025	0.55	+1.6
5,017,095	+		GFF5025	0.55	+0.4
5,017,107	+		GFF5025	0.59	-1.3
5,017,128	+		GFF5025	0.66	+0.3
5,017,136	-		GFF5025	0.69	-0.5
5,017,136	-		GFF5025	0.69	+1.0
5,017,136	-		GFF5025	0.69	-1.0
5,017,144	+		GFF5025	0.72	+0.5
5,017,146	-		GFF5025	0.72	-0.6
5,017,187	+		GFF5025	0.86	+0.3
5,017,206	+				-0.6
5,017,206	+				+1.1
5,017,206	+				+0.2
5,017,212	+				+1.0
5,017,212	+				+0.3
5,017,214	-				-0.6
5,017,214	-				-0.8
5,017,220	-				-0.8
5,017,220	-				+0.7
5,017,220	-				-0.6
5,017,227	+				+0.5
5,017,236	+				-0.0
5,017,254	-				-0.4
5,017,275	+				-0.7
5,017,275	+				-0.4
5,017,430	+				+0.4
5,017,430	+				-0.7
5,017,433	-				+1.4
5,017,438	-				-1.9
5,017,438	-				-1.2
5,017,438	-				-0.7
5,017,438	-				+0.4
5,017,550	+				+1.1
5,017,563	-		GFF5026	0.10	-0.9