Strain Fitness in Sphingobium sp. HT1-2 around GFF5019

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,011,558	+				-0.7
5,011,573	-				-0.5
5,011,624	-				+0.6
5,011,689	-				-0.2
5,011,689	-				+0.6
5,011,707	+				-0.1
5,011,713	-				-0.9
5,011,718	+				+0.4
5,011,726	-				+0.9
5,011,726	-				+0.4
5,011,726	-				-0.2
5,011,731	-				-1.3
5,011,736	-				-0.2
5,011,790	+				+0.8
5,011,790	+				+0.8
5,011,790	+				+1.3
5,011,795	+				+0.5
5,011,796	-				-0.2
5,011,798	-				+0.3
5,011,798	-				+0.1
5,011,801	-				+1.2
5,011,806	+				-1.2
5,011,814	-				+1.7
5,011,847	+				+0.3
5,011,847	+				+0.9
5,011,849	+				+1.6
5,011,855	-				+1.2
5,011,855	-				-2.1
5,011,855	-				+1.0
5,011,855	-				+0.5
5,011,855	-				-0.6
5,011,855	-				+0.5
5,011,864	+				+0.9
5,011,889	+				+0.7
5,011,904	+				+1.0
5,011,912	-				+0.1
5,011,914	+				+1.1
5,011,914	+				+0.8
5,011,914	+				+0.3
5,011,914	+				+0.8
5,011,917	-				-1.6
5,011,917	-				-1.5
5,011,922	-				+0.6
5,011,922	-				+1.1
5,011,927	+				-0.4
5,011,986	+				-1.1
5,011,986	+				-0.4
5,011,994	-				+0.1
5,012,017	-				+0.5
5,012,037	-		GFF5018	0.11	-0.8
5,012,041	+		GFF5018	0.12	+0.7
5,012,049	-		GFF5018	0.14	+0.1
5,012,064	-		GFF5018	0.17	+0.3
5,012,073	+		GFF5018	0.19	+0.4
5,012,073	+		GFF5018	0.19	+0.4
5,012,081	-		GFF5018	0.21	+1.7
5,012,081	-		GFF5018	0.21	-1.4
5,012,081	-		GFF5018	0.21	+0.7
5,012,081	-		GFF5018	0.21	-1.5
5,012,096	+		GFF5018	0.24	+0.9
5,012,099	+		GFF5018	0.24	+0.7
5,012,147	-		GFF5018	0.35	+0.4
5,012,155	-		GFF5018	0.36	+0.0
5,012,168	-		GFF5018	0.39	+0.2
5,012,218	+		GFF5018	0.50	-0.7
5,012,237	-		GFF5018	0.54	-0.2
5,012,237	-		GFF5018	0.54	+1.1
5,012,250	+		GFF5018	0.56	-0.1
5,012,256	+		GFF5018	0.58	+1.7
5,012,308	-		GFF5018	0.69	+0.5
5,012,326	+		GFF5018	0.72	+0.2
5,012,326	+		GFF5018	0.72	+0.1
5,012,330	+		GFF5018	0.73	-0.1
5,012,335	+		GFF5018	0.74	-1.3
5,012,416	-				+0.5
5,012,423	-				-1.2
5,012,451	+				-0.2
5,012,457	+				+0.6
5,012,487	+				-1.5
5,012,497	-				-0.1
5,012,518	+				-0.1
5,012,518	+				-1.6
5,012,518	+				-2.8
5,012,526	+				+0.3
5,012,526	-				+0.7
5,012,561	-				-1.5
5,012,613	+		GFF5019	0.11	+0.2
5,012,613	+		GFF5019	0.11	+1.4
5,012,621	-		GFF5019	0.12	-0.7
5,012,621	-		GFF5019	0.12	-0.7
5,012,626	-		GFF5019	0.13	+0.4
5,012,636	-		GFF5019	0.15	-2.5
5,012,649	+		GFF5019	0.18	+0.5
5,012,649	+		GFF5019	0.18	-0.2
5,012,676	-		GFF5019	0.23	-0.2
5,012,750	+		GFF5019	0.37	-0.5
5,012,750	+		GFF5019	0.37	-0.5
5,012,750	+		GFF5019	0.37	-0.0
5,012,758	-		GFF5019	0.39	-0.0
5,012,768	-		GFF5019	0.41	-0.2
5,012,829	-		GFF5019	0.53	-1.5
5,012,838	+		GFF5019	0.54	-0.7
5,012,845	+		GFF5019	0.56	+1.4
5,012,845	+		GFF5019	0.56	-0.5
5,012,846	-		GFF5019	0.56	-0.5
5,012,869	-		GFF5019	0.60	+0.3
5,012,871	+		GFF5019	0.61	+1.3
5,012,882	+		GFF5019	0.63	-0.3
5,012,912	+		GFF5019	0.69	+0.2
5,012,913	-		GFF5019	0.69	+1.1
5,012,920	-		GFF5019	0.70	+0.1
5,012,920	-		GFF5019	0.70	-0.8
5,012,933	+		GFF5019	0.73	-0.1
5,012,933	+		GFF5019	0.73	+0.1
5,012,938	+		GFF5019	0.74	-1.1
5,012,943	+		GFF5019	0.75	+0.4
5,012,943	+		GFF5019	0.75	-1.7
5,012,943	+		GFF5019	0.75	-2.3
5,012,943	+		GFF5019	0.75	-0.2
5,012,943	+		GFF5019	0.75	+1.3
5,012,943	+		GFF5019	0.75	+0.1
5,012,943	+		GFF5019	0.75	-1.1
5,012,943	+		GFF5019	0.75	+1.0
5,012,943	+		GFF5019	0.75	-2.0
5,012,943	+		GFF5019	0.75	+0.8
5,012,943	+		GFF5019	0.75	-0.5
5,012,943	+		GFF5019	0.75	-0.3
5,012,943	+		GFF5019	0.75	-0.2
5,012,943	+		GFF5019	0.75	+0.4
5,012,946	-		GFF5019	0.75	+1.2
5,012,951	-		GFF5019	0.76	+0.4
5,012,951	-		GFF5019	0.76	+0.2
5,012,951	-		GFF5019	0.76	+1.0
5,012,951	-		GFF5019	0.76	-0.5
5,012,951	-		GFF5019	0.76	+1.2
5,012,951	-		GFF5019	0.76	+0.3
5,012,951	-		GFF5019	0.76	-0.1
5,012,951	-		GFF5019	0.76	+0.8
5,012,951	-		GFF5019	0.76	-1.8
5,012,951	-		GFF5019	0.76	+0.7
5,012,975	-		GFF5019	0.81	-0.7
5,012,978	+		GFF5019	0.82	+1.3
5,012,999	+		GFF5019	0.86	+1.3
5,013,005	-		GFF5019	0.87	-0.4
5,013,007	-		GFF5019	0.87	-2.5
5,013,009	+		GFF5019	0.88	-2.2
5,013,009	+		GFF5019	0.88	+0.5
5,013,009	+		GFF5019	0.88	+0.6
5,013,009	+		GFF5019	0.88	-0.1
5,013,009	+		GFF5019	0.88	-0.0
5,013,009	+		GFF5019	0.88	-1.1
5,013,009	+		GFF5019	0.88	+1.3
5,013,014	+		GFF5019	0.89	+1.6
5,013,014	+		GFF5019	0.89	+1.2
5,013,017	-		GFF5019	0.89	-0.3
5,013,017	-		GFF5019	0.89	-0.1
5,013,017	-		GFF5019	0.89	-0.1
5,013,017	-		GFF5019	0.89	+0.5
5,013,022	-				+1.3
5,013,022	-				-1.0
5,013,036	+				-0.3
5,013,036	-				+1.0
5,013,079	+				-0.5
5,013,087	-				+0.6
5,013,102	-				+1.2
5,013,110	+				+0.2
5,013,159	+				-0.0
5,013,159	+				-0.1
5,013,159	+				+0.5
5,013,159	+				+0.5
5,013,159	+				-0.9
5,013,159	+				+0.8
5,013,159	+				+0.2
5,013,159	+				+0.3
5,013,159	+				+0.9
5,013,159	+				+0.1
5,013,159	+				-0.7
5,013,159	+				-1.3
5,013,159	+				+0.5
5,013,167	-				+0.7
5,013,167	-				-2.7
5,013,167	-				+0.4
5,013,167	-				-1.3
5,013,167	-				-2.2
5,013,167	-				-0.8
5,013,167	-				-0.5
5,013,167	-				+1.2
5,013,167	-				+0.5
5,013,167	-				-1.3
5,013,167	-				+0.9
5,013,167	-				-0.4
5,013,167	-				-0.1
5,013,167	-				-0.3
5,013,167	-				+0.9
5,013,167	-				-0.4
5,013,192	-				-0.4
5,013,226	-				+0.5
5,013,229	+				+0.8
5,013,234	+				+0.1
5,013,234	+				+1.9
5,013,234	+				-1.3
5,013,234	+				-0.8
5,013,234	+				+0.6
5,013,242	-				-0.8
5,013,258	+				-2.5
5,013,282	-				+1.7
5,013,290	+				+0.5
5,013,331	+				+0.5
5,013,331	+				-1.2
5,013,331	+				-1.5
5,013,331	+				+0.7
5,013,339	-				-0.1
5,013,362	+				-1.8
5,013,369	-				+0.7
5,013,398	+				+0.7
5,013,406	-				-0.7
5,013,440	-				+0.5
5,013,445	-				+0.5
5,013,458	-				-0.5
5,013,462	+				-0.3
5,013,462	+				-1.0
5,013,466	-				-0.6
5,013,467	+				-0.5
5,013,467	+				-0.1
5,013,467	+				+0.1
5,013,470	-				-1.6
5,013,475	-				+1.1
5,013,475	-				+0.2
5,013,475	-				-0.5
5,013,500	-				-0.2
5,013,528	+				-0.9
5,013,545	+				+1.8
5,013,548	+				-0.8
5,013,548	+				+0.3
5,013,550	+				+0.3
5,013,550	+				-0.5
5,013,550	+				-0.0
5,013,550	+				+0.0
5,013,552	+				-0.2
5,013,556	-				-0.7
5,013,556	-				+0.3
5,013,556	-				-0.8
5,013,558	-				-1.0
5,013,584	+				+1.0
5,013,586	+				+0.3
5,013,593	-				+0.0
5,013,600	+		GFF5020	0.12	-0.8
5,013,600	+		GFF5020	0.12	+0.2
5,013,605	+		GFF5020	0.14	-0.3
5,013,608	-		GFF5020	0.15	-1.2
5,013,608	-		GFF5020	0.15	+0.6
5,013,608	-		GFF5020	0.15	+1.0
5,013,608	-		GFF5020	0.15	+0.9
5,013,608	-		GFF5020	0.15	+0.8
5,013,610	+		GFF5020	0.16	+0.8
5,013,615	+		GFF5020	0.18	+0.5
5,013,631	+		GFF5020	0.24	-1.9
5,013,651	-		GFF5020	0.31	-1.3
5,013,703	-		GFF5020	0.50	-1.1
5,013,703	-		GFF5020	0.50	-1.9
5,013,703	-		GFF5020	0.50	+0.7
5,013,718	+		GFF5020	0.56	-0.1
5,013,725	-		GFF5020	0.59	+0.8
5,013,725	-		GFF5020	0.59	+0.6
5,013,725	-		GFF5020	0.59	-0.3
5,013,725	-		GFF5020	0.59	+0.3
5,013,749	-		GFF5020	0.67	-0.9
5,013,763	+		GFF5020	0.73	-0.8
5,013,766	-		GFF5020	0.74	+1.0
5,013,802	+		GFF5020	0.87	+0.3
5,013,815	+				+0.8
5,013,831	+				+0.1
5,013,834	-				-1.1
5,013,860	-		GFF5021	0.11	+0.5
5,013,861	+		GFF5021	0.12	-2.5
5,013,863	-		GFF5021	0.13	-0.7
5,013,869	-		GFF5021	0.15	-0.0
5,013,889	-		GFF5021	0.24	+0.9
5,013,898	-		GFF5021	0.27	+0.4
5,013,907	-		GFF5021	0.31	+0.5
5,013,926	-		GFF5021	0.39	-0.7
5,013,937	+		GFF5021	0.44	+1.3
5,013,937	+		GFF5021	0.44	-0.1
5,013,937	+		GFF5021	0.44	+2.1
5,013,937	+		GFF5021	0.44	+0.6
5,013,937	+		GFF5021	0.44	-0.0
5,013,940	-		GFF5021	0.45	-1.7
5,013,945	-		GFF5021	0.47	+2.4
5,013,945	-		GFF5021	0.47	+1.3
5,013,945	-		GFF5021	0.47	-0.9
5,014,003	-		GFF5021	0.72	-0.4
5,014,029	+		GFF5021	0.83	+1.3
5,014,030	+		GFF5021	0.83	+0.2
5,014,039	+		GFF5021	0.87	+0.3
5,014,039	+		GFF5021	0.87	-2.5
5,014,039	+		GFF5021	0.87	+0.2
5,014,039	-		GFF5021	0.87	-0.9
5,014,047	-				-0.5
5,014,047	-				+1.2
5,014,071	+				+0.0