Strain Fitness in Sphingobium sp. HT1-2 around GFF5016

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,009,650	+		GFF5015	0.34	+0.3
5,009,654	-		GFF5015	0.35	+0.7
5,009,663	-		GFF5015	0.36	+0.1
5,009,669	+		GFF5015	0.36	+0.8
5,009,673	-		GFF5015	0.37	-0.5
5,009,673	-		GFF5015	0.37	+0.9
5,009,699	-		GFF5015	0.40	+0.8
5,009,726	+		GFF5015	0.43	+0.1
5,009,729	-		GFF5015	0.44	+0.2
5,009,729	-		GFF5015	0.44	+0.3
5,009,737	+		GFF5015	0.45	+0.8
5,009,737	+		GFF5015	0.45	+0.9
5,009,737	+		GFF5015	0.45	+0.4
5,009,737	+		GFF5015	0.45	+1.5
5,009,737	+		GFF5015	0.45	+0.6
5,009,737	+		GFF5015	0.45	+1.2
5,009,737	+		GFF5015	0.45	+1.4
5,009,737	+		GFF5015	0.45	-0.3
5,009,739	+		GFF5015	0.45	+0.2
5,009,745	-		GFF5015	0.46	-0.2
5,009,745	-		GFF5015	0.46	-0.6
5,009,745	-		GFF5015	0.46	+0.0
5,009,747	+		GFF5015	0.46	+0.4
5,009,747	-		GFF5015	0.46	-0.3
5,009,752	-		GFF5015	0.47	+0.8
5,009,757	-		GFF5015	0.47	-0.8
5,009,760	+		GFF5015	0.48	-0.3
5,009,760	+		GFF5015	0.48	-0.3
5,009,768	-		GFF5015	0.49	-0.1
5,009,768	-		GFF5015	0.49	+1.2
5,009,768	-		GFF5015	0.49	+1.1
5,009,768	-		GFF5015	0.49	-0.7
5,009,768	-		GFF5015	0.49	-0.0
5,009,770	-		GFF5015	0.49	-0.4
5,009,772	+		GFF5015	0.49	+1.1
5,009,780	-		GFF5015	0.50	-0.0
5,009,780	-		GFF5015	0.50	-0.5
5,009,830	-		GFF5015	0.56	-0.0
5,009,835	-		GFF5015	0.57	+0.2
5,009,839	+		GFF5015	0.57	+0.1
5,009,839	+		GFF5015	0.57	-1.8
5,009,844	+		GFF5015	0.58	-0.8
5,009,844	+		GFF5015	0.58	+0.8
5,009,852	-		GFF5015	0.59	+0.5
5,009,879	+		GFF5015	0.62	+0.2
5,009,879	+		GFF5015	0.62	+0.8
5,009,881	-		GFF5015	0.63	+0.2
5,009,892	-		GFF5015	0.64	+0.9
5,009,893	+		GFF5015	0.64	-0.3
5,009,900	+		GFF5015	0.65	+0.6
5,009,900	+		GFF5015	0.65	+0.7
5,009,917	-		GFF5015	0.67	-1.4
5,009,951	+		GFF5015	0.71	-1.5
5,009,951	+		GFF5015	0.71	+0.3
5,009,959	-		GFF5015	0.72	-0.4
5,009,967	-		GFF5015	0.73	+0.5
5,009,967	-		GFF5015	0.73	+0.8
5,009,979	+		GFF5015	0.75	-0.3
5,009,979	+		GFF5015	0.75	+0.6
5,009,983	+		GFF5015	0.75	-2.1
5,009,987	-		GFF5015	0.76	-1.0
5,009,995	+		GFF5015	0.77	-0.2
5,010,005	-		GFF5015	0.78	+1.0
5,010,005	-		GFF5015	0.78	+1.1
5,010,018	+		GFF5015	0.80	+0.1
5,010,018	+		GFF5015	0.80	-1.8
5,010,026	-		GFF5015	0.80	+0.1
5,010,054	-		GFF5015	0.84	-0.0
5,010,054	-		GFF5015	0.84	-0.8
5,010,067	-		GFF5015	0.86	+0.6
5,010,106	+				+2.0
5,010,125	+				+0.5
5,010,125	+				-1.5
5,010,125	+				-1.1
5,010,182	+				+0.5
5,010,182	+				-0.8
5,010,182	+				-2.0
5,010,220	+				-1.1
5,010,227	+				+0.1
5,010,232	+				-0.3
5,010,235	-				-0.2
5,010,240	-				-0.8
5,010,278	+				+0.1
5,010,343	+				+0.5
5,010,343	+				+0.9
5,010,343	+				-0.9
5,010,344	-				+0.8
5,010,349	+				-0.6
5,010,404	-				-0.1
5,010,434	+				-1.0
5,010,444	+				+0.8
5,010,464	+				+1.0
5,010,490	+				+0.1
5,010,494	-				-0.5
5,010,519	+				+0.2
5,010,520	+				+0.8
5,010,526	+				-1.0
5,010,529	-				+0.1
5,010,546	+				+0.2
5,010,546	+				+0.6
5,010,546	+				+0.2
5,010,552	-				+0.3
5,010,554	-				-1.1
5,010,554	-				-1.3
5,010,554	-				+0.2
5,010,570	-				-0.0
5,010,577	+				+0.8
5,010,577	+				+0.3
5,010,577	+				-0.5
5,010,577	+				-1.1
5,010,577	+				-2.2
5,010,577	+				+0.7
5,010,585	-				-1.0
5,010,585	-				-0.3
5,010,585	-				-0.1
5,010,585	-				+1.1
5,010,585	-				-0.5
5,010,585	-				-0.2
5,010,585	-				-0.6
5,010,585	-				-0.4
5,010,585	-				+0.5
5,010,585	-				+1.0
5,010,587	+				+1.0
5,010,589	+				-1.7
5,010,589	+				-1.7
5,010,589	+				+0.6
5,010,589	+				+0.4
5,010,589	+				-0.0
5,010,589	+				-0.7
5,010,589	+				-0.1
5,010,589	+				-1.5
5,010,595	-				-0.0
5,010,595	-				-0.6
5,010,597	-				+1.7
5,010,597	-				-0.1
5,010,597	-				-0.4
5,010,597	-				+0.8
5,010,597	-				+0.3
5,010,597	-				-0.0
5,010,597	-				+0.9
5,010,597	-				-1.7
5,010,601	+				+1.2
5,010,601	+				+0.9
5,010,633	+				+1.4
5,010,633	+				+1.1
5,010,641	-				+0.8
5,010,643	-				-1.1
5,010,643	-				+0.0
5,010,648	-				+0.1
5,010,658	+				-0.3
5,010,658	+				+0.2
5,010,658	+				-0.1
5,010,658	+				+0.1
5,010,658	+				+0.7
5,010,666	-				-0.0
5,010,666	-				-1.3
5,010,666	-				-0.4
5,010,666	-				-0.6
5,010,669	+				-0.7
5,010,677	+				+0.3
5,010,677	+				+0.8
5,010,685	-				-0.3
5,010,685	-				+1.2
5,010,697	+				+0.2
5,010,766	-		GFF5016	0.20	-0.8
5,010,792	+		GFF5016	0.25	+0.2
5,010,795	-		GFF5016	0.25	+0.8
5,010,811	+		GFF5016	0.28	-0.2
5,010,865	+		GFF5016	0.38	-2.0
5,010,865	-		GFF5016	0.38	+2.1
5,010,884	-		GFF5016	0.41	-0.8
5,010,904	+		GFF5016	0.44	+0.7
5,010,914	-		GFF5016	0.46	+0.1
5,010,934	-		GFF5016	0.50	-2.1
5,010,950	-		GFF5016	0.52	-0.3
5,010,956	+		GFF5016	0.53	+1.2
5,010,971	-		GFF5016	0.56	+0.1
5,010,972	+		GFF5016	0.56	+0.5
5,010,980	-		GFF5016	0.58	-1.8
5,010,982	+		GFF5016	0.58	-1.7
5,010,982	+		GFF5016	0.58	-1.3
5,010,985	-		GFF5016	0.58	+0.2
5,010,986	-		GFF5016	0.59	+0.3
5,010,990	-		GFF5016	0.59	-0.0
5,010,990	-		GFF5016	0.59	-0.1
5,010,990	-		GFF5016	0.59	+0.5
5,010,998	+		GFF5016	0.61	-0.9
5,011,006	+		GFF5016	0.62	-0.1
5,011,015	-		GFF5016	0.64	-0.5
5,011,064	+		GFF5016	0.72	+1.3
5,011,072	-		GFF5016	0.74	+1.3
5,011,127	+		GFF5016	0.83	+0.5
5,011,151	-		GFF5016	0.87	+0.1
5,011,169	-				+1.4
5,011,177	+				+0.7
5,011,299	-		GFF5017	0.15	+0.2
5,011,299	-		GFF5017	0.15	+1.0
5,011,300	+		GFF5017	0.15	+0.5
5,011,377	-		GFF5017	0.55	+0.1
5,011,394	-		GFF5017	0.64	+0.8
5,011,416	+		GFF5017	0.76	+0.7
5,011,424	-		GFF5017	0.80	+0.8
5,011,424	-		GFF5017	0.80	+0.9
5,011,424	-		GFF5017	0.80	-0.8
5,011,430	-		GFF5017	0.83	-0.5
5,011,443	-				+0.5
5,011,444	+				-0.4
5,011,444	+				-0.1
5,011,444	+				-0.0
5,011,445	-				-2.1
5,011,452	-				+0.3
5,011,452	-				-2.7
5,011,452	-				-0.1
5,011,489	+				-0.7
5,011,489	+				+0.3
5,011,489	+				+1.3
5,011,489	+				-2.1
5,011,497	-				-1.6
5,011,497	-				+0.4
5,011,506	-				+0.2
5,011,523	-				+0.2
5,011,523	-				-0.5
5,011,523	-				+0.7
5,011,525	+				+0.7
5,011,525	+				+0.7
5,011,525	+				+2.0
5,011,552	-				+0.6
5,011,558	+				-0.7
5,011,573	-				-0.5
5,011,624	-				+0.6
5,011,689	-				-0.2
5,011,689	-				+0.6
5,011,707	+				-0.1
5,011,713	-				-0.9
5,011,718	+				+0.4
5,011,726	-				+0.9
5,011,726	-				+0.4
5,011,726	-				-0.2
5,011,731	-				-1.3
5,011,736	-				-0.2
5,011,790	+				+0.8
5,011,790	+				+0.8
5,011,790	+				+1.3
5,011,795	+				+0.5
5,011,796	-				-0.2
5,011,798	-				+0.3
5,011,798	-				+0.1
5,011,801	-				+1.2
5,011,806	+				-1.2
5,011,814	-				+1.7
5,011,847	+				+0.3
5,011,847	+				+0.9
5,011,849	+				+1.6
5,011,855	-				+1.2
5,011,855	-				-2.1
5,011,855	-				+1.0
5,011,855	-				+0.5
5,011,855	-				-0.6
5,011,855	-				+0.5
5,011,864	+				+0.9
5,011,889	+				+0.7
5,011,904	+				+1.0
5,011,912	-				+0.1
5,011,914	+				+1.1
5,011,914	+				+0.8
5,011,914	+				+0.3
5,011,914	+				+0.8
5,011,917	-				-1.6
5,011,917	-				-1.5
5,011,922	-				+0.6
5,011,922	-				+1.1
5,011,927	+				-0.4
5,011,986	+				-1.1
5,011,986	+				-0.4
5,011,994	-				+0.1
5,012,017	-				+0.5
5,012,037	-		GFF5018	0.11	-0.8
5,012,041	+		GFF5018	0.12	+0.7
5,012,049	-		GFF5018	0.14	+0.1
5,012,064	-		GFF5018	0.17	+0.3
5,012,073	+		GFF5018	0.19	+0.4
5,012,073	+		GFF5018	0.19	+0.4
5,012,081	-		GFF5018	0.21	+1.7
5,012,081	-		GFF5018	0.21	-1.4
5,012,081	-		GFF5018	0.21	+0.7
5,012,081	-		GFF5018	0.21	-1.5
5,012,096	+		GFF5018	0.24	+0.9
5,012,099	+		GFF5018	0.24	+0.7
5,012,147	-		GFF5018	0.35	+0.4
5,012,155	-		GFF5018	0.36	+0.0
5,012,168	-		GFF5018	0.39	+0.2
5,012,218	+		GFF5018	0.50	-0.7