Strain Fitness in Sphingobium sp. HT1-2 around GFF5013

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,006,648	+		GFF5011	0.82	+0.3
5,006,668	+		GFF5011	0.83	-0.1
5,006,676	-		GFF5011	0.83	-0.7
5,006,676	-		GFF5011	0.83	-0.8
5,006,679	+		GFF5011	0.83	+0.2
5,006,679	+		GFF5011	0.83	+1.4
5,006,679	+		GFF5011	0.83	+0.5
5,006,687	-		GFF5011	0.84	-0.9
5,006,738	+		GFF5011	0.86	-0.1
5,006,774	+		GFF5011	0.87	+0.2
5,006,774	+		GFF5011	0.87	-0.2
5,006,781	+		GFF5011	0.88	-0.3
5,006,782	-		GFF5011	0.88	-2.0
5,006,785	+		GFF5011	0.88	+0.7
5,006,786	+		GFF5011	0.88	+0.8
5,006,805	-		GFF5011	0.89	+1.5
5,006,814	-		GFF5011	0.89	+0.9
5,006,814	-		GFF5011	0.89	+2.1
5,006,814	-		GFF5011	0.89	+0.8
5,006,814	-		GFF5011	0.89	-0.4
5,006,816	+		GFF5011	0.89	+0.3
5,006,816	+		GFF5011	0.89	-0.3
5,006,816	+		GFF5011	0.89	-2.4
5,006,816	+		GFF5011	0.89	+0.8
5,006,816	+		GFF5011	0.89	-0.0
5,006,816	+		GFF5011	0.89	+0.0
5,006,816	+		GFF5011	0.89	+0.2
5,006,824	-		GFF5011	0.89	-0.1
5,006,824	-		GFF5011	0.89	-0.7
5,006,824	-		GFF5011	0.89	+0.5
5,006,824	-		GFF5011	0.89	+0.3
5,006,825	-		GFF5011	0.89	-1.5
5,006,837	-		GFF5011	0.90	-0.5
5,006,868	-				+0.2
5,006,868	-				+0.2
5,006,912	+				+0.8
5,006,932	-				+1.5
5,006,933	+				+0.2
5,007,028	-				+0.7
5,007,052	-				+0.2
5,007,193	-				+0.1
5,007,204	+				+0.8
5,007,204	+				-1.3
5,007,209	+				+0.9
5,007,209	+				-1.5
5,007,209	+				-0.7
5,007,212	-				-0.8
5,007,212	-				-2.7
5,007,212	-				+0.2
5,007,212	-				+0.7
5,007,244	-				+0.3
5,007,249	-				+0.9
5,007,250	+				+0.3
5,007,250	+				-1.3
5,007,250	+				-0.7
5,007,250	+				-0.4
5,007,250	+				-1.0
5,007,261	+				-0.8
5,007,266	+				-0.5
5,007,266	+				+0.4
5,007,266	+				+0.3
5,007,274	-				+0.4
5,007,314	-				+0.8
5,007,345	+				+1.1
5,007,398	+				-0.1
5,007,398	+				+0.8
5,007,398	+				+0.3
5,007,411	-				-0.5
5,007,418	+				+0.6
5,007,418	+				+0.2
5,007,426	-				+0.8
5,007,431	-				-1.1
5,007,447	-				-0.8
5,007,470	+				-0.6
5,007,481	+				+0.3
5,007,501	-		GFF5012	0.20	+0.4
5,007,501	-		GFF5012	0.20	-0.3
5,007,501	-		GFF5012	0.20	+1.2
5,007,749	+		GFF5013	0.62	-1.5
5,007,749	+		GFF5013	0.62	+0.6
5,007,749	+		GFF5013	0.62	-0.3
5,007,749	+		GFF5013	0.62	+0.1
5,007,749	+		GFF5013	0.62	+0.7
5,007,749	+		GFF5013	0.62	-1.8
5,007,749	+		GFF5013	0.62	-1.1
5,007,760	+		GFF5013	0.68	-0.6
5,007,784	+		GFF5013	0.81	-0.5
5,007,798	+		GFF5013	0.89	+0.1
5,007,820	+				-1.3
5,007,825	+				+0.6
5,007,830	+				+0.9
5,007,830	+				+0.4
5,007,830	+				+0.1
5,007,830	+				-0.6
5,007,830	+				+0.3
5,007,830	+				+1.3
5,007,830	+				+0.4
5,007,830	+				-0.4
5,007,830	+				+0.4
5,007,830	+				-0.0
5,007,830	+				+0.4
5,007,838	-				+0.8
5,007,838	-				+1.1
5,007,838	-				+0.4
5,007,838	-				+0.5
5,007,838	-				-0.5
5,007,838	-				+0.8
5,007,838	-				-0.3
5,007,838	-				-0.8
5,007,838	-				-0.7
5,007,838	-				+0.2
5,007,838	-				+0.1
5,007,838	-				-0.5
5,007,838	-				-0.2
5,007,838	-				+0.2
5,007,838	-				-1.5
5,007,838	-				+0.7
5,007,838	-				-0.3
5,007,838	-				+1.5
5,007,838	-				+0.5
5,007,838	-				-0.1
5,007,866	+				+2.0
5,007,874	-				+1.3
5,007,874	-				+1.8
5,007,874	-				+1.5
5,007,892	+				-0.6
5,007,892	+				+1.6
5,007,899	-				-2.2
5,007,900	-				+0.7
5,007,900	-				-0.6
5,007,900	-				-1.3
5,007,910	+				+0.3
5,007,918	-				+0.3
5,007,918	-				+0.1
5,007,918	-				-1.4
5,007,919	+				-0.0
5,007,924	+				+0.3
5,007,928	-				-2.2
5,007,928	-				+0.1
5,007,931	+				+0.5
5,007,932	-				+0.2
5,007,932	-				+0.4
5,007,963	-				+1.0
5,007,975	+				-1.9
5,007,983	+				-2.2
5,007,983	-				-1.7
5,007,983	-				+0.1
5,007,983	-				+0.3
5,007,990	+				+0.5
5,007,990	+				+0.8
5,008,034	+				-2.2
5,008,051	+				+0.1
5,008,051	+				-0.5
5,008,051	+				+0.0
5,008,059	-				+0.9
5,008,059	-				-0.2
5,008,077	-				+0.2
5,008,096	+				-0.7
5,008,096	+				+0.3
5,008,139	+				-1.9
5,008,139	+				+1.6
5,008,139	+				+0.4
5,008,139	+				+1.7
5,008,139	+				-0.0
5,008,147	-				-0.3
5,008,147	-				-0.4
5,008,147	-				-1.7
5,008,147	-				+1.6
5,008,147	-				-0.2
5,008,168	-				+0.1
5,008,175	-				+1.3
5,008,183	+				-0.1
5,008,183	+				-0.3
5,008,197	+				+0.8
5,008,211	-				+0.7
5,008,231	+				-0.6
5,008,231	+				+0.1
5,008,231	+				-0.3
5,008,231	+				+0.4
5,008,231	-				+0.5
5,008,239	-				+0.3
5,008,269	+				-0.6
5,008,274	+				-0.1
5,008,291	+				+0.4
5,008,303	+				+0.8
5,008,303	+				-0.2
5,008,303	+				-0.5
5,008,305	+				+0.2
5,008,306	-				-0.0
5,008,308	+				-0.7
5,008,308	-				-1.3
5,008,311	-				-2.1
5,008,361	+				+0.1
5,008,362	+				+0.4
5,008,369	-				+0.3
5,008,372	+				-0.1
5,008,413	+				-0.2
5,008,443	+				+0.2
5,008,444	+				-1.3
5,008,451	+				-0.6
5,008,490	+				-1.6
5,008,506	-		GFF5014	0.11	-1.0
5,008,524	+		GFF5014	0.13	-0.3
5,008,526	+		GFF5014	0.13	-1.5
5,008,526	+		GFF5014	0.13	+1.6
5,008,534	-		GFF5014	0.14	+0.3
5,008,534	-		GFF5014	0.14	-0.3
5,008,534	-		GFF5014	0.14	-1.9
5,008,555	-		GFF5014	0.17	-0.3
5,008,577	+		GFF5014	0.19	+1.6
5,008,577	+		GFF5014	0.19	+1.3
5,008,585	-		GFF5014	0.20	+1.5
5,008,610	-		GFF5014	0.23	+0.3
5,008,610	-		GFF5014	0.23	-0.6
5,008,618	+		GFF5014	0.24	+0.6
5,008,618	-		GFF5014	0.24	-0.3
5,008,626	+		GFF5014	0.25	+1.1
5,008,634	-		GFF5014	0.26	+0.6
5,008,634	-		GFF5014	0.26	-0.4
5,008,660	+		GFF5014	0.29	-1.3
5,008,663	-		GFF5014	0.29	-1.0
5,008,663	-		GFF5014	0.29	+0.1
5,008,679	+		GFF5014	0.31	-0.2
5,008,686	+		GFF5014	0.32	+0.4
5,008,689	-		GFF5014	0.32	+0.8
5,008,694	-		GFF5014	0.33	+0.3
5,008,712	+		GFF5014	0.35	-1.2
5,008,712	+		GFF5014	0.35	+0.1
5,008,712	+		GFF5014	0.35	+1.6
5,008,729	+		GFF5014	0.37	+0.9
5,008,729	+		GFF5014	0.37	-1.3
5,008,729	+		GFF5014	0.37	-0.3
5,008,729	+		GFF5014	0.37	-1.2
5,008,737	-		GFF5014	0.38	+0.9
5,008,774	+		GFF5014	0.42	+0.6
5,008,782	-		GFF5014	0.43	-0.6
5,008,782	-		GFF5014	0.43	+1.2
5,008,789	+		GFF5014	0.44	+1.0
5,008,797	-		GFF5014	0.45	+0.1
5,008,799	-		GFF5014	0.45	+0.1
5,008,807	+		GFF5014	0.46	+0.8
5,008,807	+		GFF5014	0.46	-0.6
5,008,807	+		GFF5014	0.46	+0.6