Strain Fitness in Sphingobium sp. HT1-2 around GFF4997

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,993,025	-				+0.6
4,993,028	+				-1.6
4,993,028	+				+0.8
4,993,028	+				-0.2
4,993,028	+				+0.1
4,993,036	-				-0.2
4,993,036	-				-0.9
4,993,036	-				-0.6
4,993,036	-				+0.9
4,993,050	+				+0.3
4,993,074	+		GFF4995	0.17	+1.4
4,993,082	-		GFF4995	0.20	-0.3
4,993,084	+		GFF4995	0.20	-0.4
4,993,084	+		GFF4995	0.20	-0.3
4,993,087	+		GFF4995	0.21	+0.9
4,993,092	-		GFF4995	0.23	+2.7
4,993,097	-		GFF4995	0.25	-1.0
4,993,107	+		GFF4995	0.28	+0.8
4,993,107	+		GFF4995	0.28	+1.2
4,993,107	+		GFF4995	0.28	+1.0
4,993,107	+		GFF4995	0.28	+1.2
4,993,115	-		GFF4995	0.30	-0.3
4,993,115	-		GFF4995	0.30	+1.1
4,993,115	-		GFF4995	0.30	-0.0
4,993,124	-		GFF4995	0.33	-0.2
4,993,125	-		GFF4995	0.34	+1.8
4,993,136	+		GFF4995	0.37	+0.2
4,993,291	+		GFF4995	0.87	+1.1
4,993,291	+		GFF4995	0.87	+0.2
4,993,294	-		GFF4995	0.88	+0.1
4,993,294	-		GFF4995	0.88	+1.7
4,993,296	+		GFF4995	0.89	-0.8
4,993,299	-				+0.6
4,993,318	+				+0.2
4,993,329	+				-0.5
4,993,329	+				+0.3
4,993,339	+				+0.2
4,993,376	+				+0.6
4,993,383	-				-0.6
4,993,384	-				-0.2
4,993,384	-				-0.9
4,993,439	+				+1.4
4,993,439	+				-0.5
4,993,439	+				+0.5
4,993,447	-				-1.6
4,993,447	-				-0.5
4,993,447	-				+0.8
4,993,449	+				+0.4
4,993,457	-				-0.0
4,993,476	+				-0.1
4,993,500	+				+0.6
4,993,500	+				-0.5
4,993,500	+				-0.9
4,993,500	+				+0.7
4,993,508	-				+0.1
4,993,518	-				-0.5
4,993,522	-				-0.1
4,993,548	+				+0.5
4,993,548	+				+0.9
4,993,548	+				-0.5
4,993,548	+				+0.2
4,993,548	+				+0.8
4,993,548	+				-0.1
4,993,548	+				-1.3
4,993,548	+				-3.1
4,993,548	+				+0.8
4,993,548	+				+0.8
4,993,548	+				-1.9
4,993,548	+				-0.3
4,993,548	+				+0.3
4,993,548	+				-2.1
4,993,548	+				-0.3
4,993,548	+				-0.7
4,993,548	+				-0.8
4,993,553	+				+0.3
4,993,553	+				-0.8
4,993,553	+				-0.1
4,993,554	+				+0.9
4,993,556	-				-1.1
4,993,556	-				-0.6
4,993,556	-				-0.7
4,993,556	-				-1.5
4,993,556	-				-0.5
4,993,556	-				+1.0
4,993,556	-				+0.7
4,993,556	-				-0.3
4,993,556	-				+0.9
4,993,556	-				+0.8
4,993,556	-				+1.1
4,993,556	-				-1.1
4,993,556	-				-0.6
4,993,556	-				+1.2
4,993,568	+				-0.0
4,993,569	+				-0.8
4,993,569	+				-2.3
4,993,569	+				-0.6
4,993,569	+				+1.5
4,993,569	+				+0.2
4,993,569	+				-2.0
4,993,576	-				+1.1
4,993,577	-				-0.1
4,993,577	-				+0.1
4,993,577	-				-0.5
4,993,577	-				-0.3
4,993,577	-				+0.2
4,993,585	+				+0.3
4,993,586	+				-0.6
4,993,610	+				-0.8
4,993,610	+				-2.7
4,993,610	+				+1.5
4,993,610	-				+0.7
4,993,623	-				+0.4
4,993,635	+				-0.5
4,993,636	-				+0.1
4,993,636	-				-0.4
4,993,636	-				+0.4
4,993,636	-				+0.3
4,993,643	-				+0.5
4,993,666	+				-2.8
4,993,666	+				+1.1
4,993,667	+				-0.6
4,993,697	+		GFF4996	0.13	+0.1
4,993,703	+		GFF4996	0.16	-1.2
4,993,705	-		GFF4996	0.17	+0.1
4,993,705	-		GFF4996	0.17	-0.4
4,993,709	+		GFF4996	0.18	-0.8
4,993,709	+		GFF4996	0.18	-2.1
4,993,712	-		GFF4996	0.19	-0.0
4,993,712	-		GFF4996	0.19	+0.3
4,993,712	-		GFF4996	0.19	-0.1
4,993,712	-		GFF4996	0.19	+0.5
4,993,714	+		GFF4996	0.20	-0.5
4,993,717	-		GFF4996	0.21	+0.1
4,993,717	-		GFF4996	0.21	+0.1
4,993,717	-		GFF4996	0.21	-1.1
4,993,754	+		GFF4996	0.36	-0.0
4,993,757	+		GFF4996	0.37	-0.0
4,993,762	-		GFF4996	0.39	-0.3
4,993,764	+		GFF4996	0.40	-0.7
4,993,765	-		GFF4996	0.40	-1.6
4,993,770	-		GFF4996	0.42	-0.4
4,993,792	-		GFF4996	0.51	+1.3
4,993,792	-		GFF4996	0.51	-2.5
4,993,792	-		GFF4996	0.51	-0.5
4,993,792	-		GFF4996	0.51	-1.7
4,993,792	-		GFF4996	0.51	+0.7
4,993,808	+		GFF4996	0.58	-1.6
4,993,816	-		GFF4996	0.61	+0.4
4,993,816	-		GFF4996	0.61	-0.0
4,993,816	-		GFF4996	0.61	-0.7
4,993,823	-		GFF4996	0.63	+0.7
4,993,830	-		GFF4996	0.66	+0.1
4,993,889	+				+1.1
4,993,907	-				+0.9
4,993,915	+				+0.3
4,993,918	+				+0.1
4,993,918	+				+0.8
4,993,918	+				+0.1
4,993,921	+				-0.4
4,994,001	-				+0.0
4,994,006	-				+0.5
4,994,106	-		GFF4997	0.46	+0.3
4,994,121	-		GFF4997	0.54	-0.3
4,994,121	-		GFF4997	0.54	-0.2
4,994,121	-		GFF4997	0.54	-0.6
4,994,145	+		GFF4997	0.66	+0.5
4,994,151	-		GFF4997	0.69	+0.1
4,994,159	-		GFF4997	0.73	-0.4
4,994,159	-		GFF4997	0.73	+0.6
4,994,159	-		GFF4997	0.73	-1.5
4,994,166	-		GFF4997	0.76	-0.3
4,994,194	-				+0.8
4,994,208	+				+0.6
4,994,213	+				+1.1
4,994,241	+				+1.2
4,994,249	-				+1.9
4,994,282	+				+1.8
4,994,282	+				-0.7
4,994,287	+				+0.1
4,994,288	+				-0.6
4,994,290	-				-1.5
4,994,295	-				+0.8
4,994,310	+				-0.0
4,994,310	+				-0.0
4,994,318	-				-0.1
4,994,342	-				+1.0
4,994,350	-				-1.9
4,994,364	+				-0.5
4,994,366	+				-0.9
4,994,372	-				+0.4
4,994,374	-				+0.1
4,994,408	+				-0.4
4,994,408	+				-0.2
4,994,408	+				+1.3
4,994,408	+				+1.5
4,994,408	+				-0.6
4,994,408	+				+1.5
4,994,408	+				-0.7
4,994,416	-				+1.0
4,994,416	-				+1.6
4,994,416	-				+0.6
4,994,416	-				-0.2
4,994,416	-				+0.5
4,994,439	+				-1.0
4,994,473	+				+0.5
4,994,478	+				-0.6
4,994,482	-				-0.3
4,994,485	+				-0.0
4,994,486	-				+0.5
4,994,486	-				-0.6
4,994,489	+				+0.4
4,994,499	+				+0.4
4,994,507	-				+0.2
4,994,507	-				-0.1
4,994,509	+				-2.1
4,994,509	+				+0.1
4,994,509	+				+0.7
4,994,512	-				+0.3
4,994,522	-		GFF4998	0.12	-0.2
4,994,522	-		GFF4998	0.12	-0.4
4,994,524	+		GFF4998	0.12	-0.1
4,994,524	+		GFF4998	0.12	-0.3
4,994,529	+		GFF4998	0.13	+0.7
4,994,559	+		GFF4998	0.20	-1.5
4,994,559	+		GFF4998	0.20	-0.5
4,994,559	+		GFF4998	0.20	-0.4
4,994,559	+		GFF4998	0.20	-0.3
4,994,559	+		GFF4998	0.20	+0.5
4,994,559	+		GFF4998	0.20	+0.9
4,994,559	+		GFF4998	0.20	+0.6
4,994,559	+		GFF4998	0.20	+1.2
4,994,559	+		GFF4998	0.20	+1.3
4,994,559	+		GFF4998	0.20	-0.6
4,994,559	+		GFF4998	0.20	-0.0
4,994,559	+		GFF4998	0.20	-0.2
4,994,561	+		GFF4998	0.21	-1.7
4,994,562	-		GFF4998	0.21	-0.1
4,994,564	+		GFF4998	0.21	-0.3
4,994,564	+		GFF4998	0.21	+0.8
4,994,564	+		GFF4998	0.21	+1.1
4,994,567	-		GFF4998	0.22	+1.9
4,994,567	-		GFF4998	0.22	+1.5
4,994,567	-		GFF4998	0.22	+0.2
4,994,567	-		GFF4998	0.22	-1.6
4,994,567	-		GFF4998	0.22	-0.5
4,994,569	+		GFF4998	0.23	+0.5
4,994,569	+		GFF4998	0.23	+0.3
4,994,572	-		GFF4998	0.23	+1.2
4,994,572	-		GFF4998	0.23	-0.3
4,994,572	-		GFF4998	0.23	+0.3
4,994,572	-		GFF4998	0.23	+1.1
4,994,582	-		GFF4998	0.26	-0.2
4,994,591	+		GFF4998	0.28	-0.2
4,994,622	+		GFF4998	0.35	-0.1
4,994,630	-		GFF4998	0.37	+0.3
4,994,632	+		GFF4998	0.37	-1.2
4,994,640	-		GFF4998	0.39	-0.9
4,994,640	-		GFF4998	0.39	-0.3
4,994,649	-		GFF4998	0.41	-0.5
4,994,659	-		GFF4998	0.43	-0.2
4,994,662	+		GFF4998	0.44	-0.8
4,994,670	-		GFF4998	0.46	-0.4
4,994,670	-		GFF4998	0.46	-0.0
4,994,672	-		GFF4998	0.46	+0.9
4,994,674	+		GFF4998	0.47	-0.5
4,994,682	-		GFF4998	0.49	-0.5
4,994,684	-		GFF4998	0.49	+0.5
4,994,711	+		GFF4998	0.55	-1.5
4,994,717	-		GFF4998	0.57	+0.8
4,994,719	+		GFF4998	0.57	+0.5
4,994,727	-		GFF4998	0.59	+0.5
4,994,733	+		GFF4998	0.60	-0.2
4,994,735	+		GFF4998	0.61	+1.0
4,994,742	-		GFF4998	0.62	+0.9
4,994,755	+		GFF4998	0.65	+0.6
4,994,755	+		GFF4998	0.65	-0.3
4,994,755	+		GFF4998	0.65	-0.3
4,994,755	+		GFF4998	0.65	-0.6
4,994,763	-		GFF4998	0.67	-0.0
4,994,763	-		GFF4998	0.67	-1.5
4,994,763	-		GFF4998	0.67	-0.2
4,994,800	+		GFF4998	0.76	-1.6
4,994,808	-		GFF4998	0.77	+0.2
4,994,808	-		GFF4998	0.77	+0.4
4,994,827	-		GFF4998	0.82	-0.3
4,994,832	-		GFF4998	0.83	-0.9
4,994,841	+		GFF4998	0.85	+0.9
4,994,841	+		GFF4998	0.85	-0.7
4,994,841	+		GFF4998	0.85	-1.2
4,994,841	+		GFF4998	0.85	+0.1
4,994,841	+		GFF4998	0.85	-0.8
4,994,841	+		GFF4998	0.85	-0.6
4,994,841	+		GFF4998	0.85	+1.7
4,994,849	-		GFF4998	0.87	-0.1
4,994,849	-		GFF4998	0.87	-3.0
4,994,849	-		GFF4998	0.87	+1.9
4,994,855	+		GFF4998	0.88	-0.1
4,994,855	+		GFF4998	0.88	+0.3
4,994,858	-		GFF4998	0.89	+0.4
4,994,860	+		GFF4998	0.89	+1.9
4,994,860	+		GFF4998	0.89	+0.5
4,994,863	+				+1.3
4,994,863	+				+0.4
4,994,868	-				-0.4
4,994,869	+				+0.4
4,994,878	-				-0.4
4,994,878	-				-0.9
4,994,883	-				+0.4
4,994,927	+				-0.0
4,994,927	-				+1.1
4,994,935	-				+0.6
4,994,949	+				-0.3
4,994,949	+				-1.0
4,994,949	+				+0.5
4,994,957	-				-0.3
4,994,957	-				-0.1
4,994,957	-				+0.9
4,994,967	-				+0.9
4,994,971	-				+0.1
4,994,972	-				-0.3
4,994,990	-				-0.1
4,994,998	+				+0.3
4,995,006	-				+1.8
4,995,011	+				+0.8
4,995,016	-				-0.6
4,995,038	+				+0.7
4,995,047	-				-2.4
4,995,049	+				-0.8
4,995,052	-				-0.1
4,995,052	-				+0.1
4,995,054	+				-0.5
4,995,057	-				-0.7
4,995,069	+				+0.6
4,995,080	+				-0.0
4,995,089	+				+0.5
4,995,089	+				+0.6
4,995,097	-				+0.7
4,995,097	-				+0.7
4,995,109	-				-0.1
4,995,110	+				+0.2
4,995,124	-				-0.7
4,995,202	+		GFF4999	0.33	-0.5
4,995,202	+		GFF4999	0.33	-0.2