Strain Fitness in Sphingobium sp. HT1-2 around GFF4990

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,989,082	-		GFF4989	0.35	+0.6
4,989,099	-		GFF4989	0.37	+0.4
4,989,108	-		GFF4989	0.38	-0.7
4,989,109	-		GFF4989	0.38	+0.9
4,989,139	-		GFF4989	0.40	+0.6
4,989,144	-		GFF4989	0.41	-0.0
4,989,155	-		GFF4989	0.42	-0.3
4,989,163	-		GFF4989	0.43	+0.3
4,989,186	-		GFF4989	0.45	-0.8
4,989,197	-		GFF4989	0.46	-0.7
4,989,197	-		GFF4989	0.46	-1.5
4,989,197	-		GFF4989	0.46	+0.3
4,989,240	-		GFF4989	0.50	-0.8
4,989,293	-		GFF4989	0.54	-0.6
4,989,333	-		GFF4989	0.58	-1.9
4,989,335	-		GFF4989	0.58	+0.1
4,989,336	+		GFF4989	0.58	-0.7
4,989,336	+		GFF4989	0.58	-0.6
4,989,336	+		GFF4989	0.58	-0.6
4,989,336	+		GFF4989	0.58	-0.9
4,989,336	+		GFF4989	0.58	-1.5
4,989,344	-		GFF4989	0.59	-1.3
4,989,344	-		GFF4989	0.59	-0.1
4,989,344	-		GFF4989	0.59	+0.3
4,989,344	-		GFF4989	0.59	+0.1
4,989,344	-		GFF4989	0.59	-0.0
4,989,346	+		GFF4989	0.59	-1.2
4,989,346	+		GFF4989	0.59	-0.6
4,989,354	-		GFF4989	0.60	+0.4
4,989,354	-		GFF4989	0.60	-0.5
4,989,354	-		GFF4989	0.60	+1.3
4,989,361	-		GFF4989	0.60	+1.1
4,989,366	+		GFF4989	0.61	+0.5
4,989,375	-		GFF4989	0.62	-0.5
4,989,387	+		GFF4989	0.63	+1.1
4,989,412	+		GFF4989	0.65	+0.2
4,989,442	+		GFF4989	0.68	-0.1
4,989,455	-		GFF4989	0.69	+0.4
4,989,469	-		GFF4989	0.70	-1.5
4,989,500	+		GFF4989	0.73	+1.0
4,989,507	-		GFF4989	0.73	+0.2
4,989,534	-		GFF4989	0.76	+0.3
4,989,625	-		GFF4989	0.84	+0.2
4,989,625	-		GFF4989	0.84	+0.7
4,989,640	-		GFF4989	0.85	+0.3
4,989,654	+		GFF4989	0.87	-1.0
4,989,657	-		GFF4989	0.87	+0.2
4,989,657	-		GFF4989	0.87	+0.8
4,989,667	-		GFF4989	0.88	+0.7
4,989,679	+		GFF4989	0.89	-0.5
4,989,693	+				+0.1
4,989,693	+				-1.3
4,989,693	+				+0.1
4,989,693	+				+0.2
4,989,693	+				-1.4
4,989,701	-				+0.9
4,989,701	-				+0.5
4,989,701	-				-0.4
4,989,701	-				-0.2
4,989,701	-				-0.1
4,989,725	+				+0.0
4,989,727	+				+0.5
4,989,727	+				-0.7
4,989,738	-				+0.9
4,989,764	+				+0.7
4,989,764	+				+0.1
4,989,764	+				+0.1
4,989,764	+				-0.3
4,989,764	+				+0.4
4,989,764	+				-0.3
4,989,764	+				-0.1
4,989,764	+				-0.0
4,989,764	+				-0.6
4,989,764	+				+0.2
4,989,767	-				-1.4
4,989,772	-				+0.8
4,989,772	-				+1.4
4,989,772	-				+0.3
4,989,772	-				+0.6
4,989,772	-				-0.7
4,989,772	-				+0.1
4,989,772	-				+1.8
4,989,772	-				+0.1
4,989,772	-				+0.3
4,989,782	-				-0.8
4,989,784	+				+1.9
4,989,784	+				+0.9
4,989,784	+				+0.6
4,989,789	+				+2.4
4,989,789	+				-1.0
4,989,792	-				-0.2
4,989,792	-				+0.8
4,989,792	-				+0.0
4,989,792	-				-0.1
4,989,792	-				-2.7
4,989,797	-				+0.7
4,989,809	+				-0.7
4,989,809	+				-0.1
4,989,818	+				-0.5
4,989,867	+				+1.1
4,989,868	+				+1.2
4,989,876	-				-0.1
4,989,876	-				+1.5
4,989,876	-				+0.5
4,989,882	+				+0.9
4,989,920	-				+0.4
4,989,964	-				-1.5
4,989,967	+				+0.1
4,989,974	+				+0.2
4,989,980	+				-0.1
4,990,011	+				+0.5
4,990,015	-				-0.2
4,990,019	-				-1.1
4,990,026	-				-0.5
4,990,070	-				+0.8
4,990,077	+				-0.3
4,990,077	+				+0.6
4,990,077	+				+0.5
4,990,077	+				-0.9
4,990,080	-				+1.3
4,990,085	-				-0.7
4,990,085	-				-0.5
4,990,111	-				-0.3
4,990,164	+				+0.5
4,990,167	-				+0.4
4,990,169	+				+0.1
4,990,177	-		GFF4990	0.10	+2.0
4,990,264	+		GFF4990	0.19	+1.0
4,990,272	+		GFF4990	0.20	+0.5
4,990,276	+		GFF4990	0.20	+0.7
4,990,293	+		GFF4990	0.22	-0.0
4,990,301	+		GFF4990	0.23	+1.2
4,990,301	+		GFF4990	0.23	+0.7
4,990,301	+		GFF4990	0.23	-0.7
4,990,309	-		GFF4990	0.24	-1.0
4,990,309	-		GFF4990	0.24	-1.3
4,990,309	-		GFF4990	0.24	+0.8
4,990,309	-		GFF4990	0.24	+0.4
4,990,319	-		GFF4990	0.25	-0.1
4,990,325	-		GFF4990	0.25	-0.8
4,990,331	-		GFF4990	0.26	-0.3
4,990,337	+		GFF4990	0.27	-0.6
4,990,337	+		GFF4990	0.27	-0.5
4,990,345	-		GFF4990	0.27	-1.2
4,990,369	-		GFF4990	0.30	+0.8
4,990,373	+		GFF4990	0.30	-0.5
4,990,381	-		GFF4990	0.31	+1.1
4,990,381	-		GFF4990	0.31	-0.3
4,990,403	+		GFF4990	0.33	+0.9
4,990,403	+		GFF4990	0.33	-1.1
4,990,411	-		GFF4990	0.34	+0.4
4,990,411	-		GFF4990	0.34	+0.6
4,990,411	-		GFF4990	0.34	+0.4
4,990,411	-		GFF4990	0.34	-0.0
4,990,411	-		GFF4990	0.34	-0.6
4,990,411	-		GFF4990	0.34	+1.2
4,990,450	+		GFF4990	0.38	-0.5
4,990,450	+		GFF4990	0.38	-0.1
4,990,452	+		GFF4990	0.38	-0.2
4,990,458	-		GFF4990	0.39	-1.3
4,990,460	+		GFF4990	0.39	-1.6
4,990,460	-		GFF4990	0.39	-0.5
4,990,497	+		GFF4990	0.43	-1.5
4,990,513	-		GFF4990	0.45	+1.9
4,990,519	+		GFF4990	0.45	+0.5
4,990,527	+		GFF4990	0.46	+0.3
4,990,527	-		GFF4990	0.46	+0.5
4,990,537	-		GFF4990	0.47	-0.8
4,990,537	-		GFF4990	0.47	+1.1
4,990,541	-		GFF4990	0.47	+1.1
4,990,543	+		GFF4990	0.48	+0.5
4,990,543	+		GFF4990	0.48	+0.4
4,990,543	+		GFF4990	0.48	+0.3
4,990,553	+		GFF4990	0.49	+0.6
4,990,558	+		GFF4990	0.49	+0.5
4,990,562	-		GFF4990	0.50	+1.6
4,990,566	-		GFF4990	0.50	-0.7
4,990,566	-		GFF4990	0.50	-1.9
4,990,566	-		GFF4990	0.50	-1.7
4,990,566	-		GFF4990	0.50	-0.2
4,990,566	-		GFF4990	0.50	+1.4
4,990,578	+		GFF4990	0.51	+0.9
4,990,586	-		GFF4990	0.52	+0.3
4,990,586	-		GFF4990	0.52	+0.1
4,990,586	-		GFF4990	0.52	-0.1
4,990,637	+		GFF4990	0.57	-1.6
4,990,637	-		GFF4990	0.57	-0.0
4,990,645	-		GFF4990	0.58	-0.8
4,990,673	-		GFF4990	0.61	+1.9
4,990,713	+		GFF4990	0.65	+1.3
4,990,728	-		GFF4990	0.66	-0.0
4,990,733	+		GFF4990	0.67	-0.5
4,990,741	-		GFF4990	0.68	+1.0
4,990,741	-		GFF4990	0.68	-1.5
4,990,780	-		GFF4990	0.72	+0.6
4,990,788	-		GFF4990	0.73	-0.1
4,990,811	+		GFF4990	0.75	-2.0
4,990,818	+		GFF4990	0.76	+0.5
4,990,821	-		GFF4990	0.76	+0.5
4,990,828	+		GFF4990	0.77	+1.0
4,990,838	+		GFF4990	0.78	+0.4
4,990,846	-		GFF4990	0.78	-0.9
4,990,846	-		GFF4990	0.78	+0.8
4,990,846	-		GFF4990	0.78	-1.6
4,990,846	-		GFF4990	0.78	+0.4
4,990,846	-		GFF4990	0.78	-0.4
4,990,851	-		GFF4990	0.79	+0.1
4,990,886	+		GFF4990	0.83	+0.0
4,990,895	-		GFF4990	0.83	+1.1
4,990,909	+		GFF4990	0.85	-1.2
4,990,916	+		GFF4990	0.86	+0.0
4,990,925	-		GFF4990	0.87	-0.1
4,990,943	-		GFF4990	0.88	+1.4
4,990,970	-				-0.0
4,990,973	+				+0.4
4,990,981	-				-0.1
4,991,008	+				-0.0
4,991,008	+				+0.4
4,991,008	+				+1.1
4,991,016	-				-1.7
4,991,025	+				-1.9
4,991,043	-				+1.2
4,991,048	-				+0.1
4,991,057	+				+0.1
4,991,057	+				-0.3
4,991,070	-				-3.1
4,991,123	+				+0.4
4,991,128	+				-1.5
4,991,128	+				-0.3
4,991,134	+				-0.7
4,991,134	+				+0.5
4,991,142	-				-0.3
4,991,142	-				-0.5
4,991,142	-				+0.1
4,991,144	+				+0.1
4,991,152	-				+0.3
4,991,162	-				-0.0
4,991,171	+				+0.9
4,991,179	-				+0.2
4,991,192	+				+1.3
4,991,210	-				+0.6
4,991,215	+		GFF4991	0.10	+2.2
4,991,215	+		GFF4991	0.10	+1.5
4,991,215	+		GFF4991	0.10	-0.1
4,991,215	+		GFF4991	0.10	-0.4
4,991,238	-		GFF4991	0.15	+0.3
4,991,242	-		GFF4991	0.15	-0.7
4,991,284	-		GFF4991	0.24	+0.4
4,991,290	+		GFF4991	0.25	-0.5
4,991,290	+		GFF4991	0.25	+0.3
4,991,298	-		GFF4991	0.26	+0.2
4,991,308	-		GFF4991	0.28	-2.1
4,991,362	-		GFF4991	0.39	+1.0
4,991,365	+		GFF4991	0.39	-0.5
4,991,365	+		GFF4991	0.39	+1.3
4,991,365	+		GFF4991	0.39	-0.5
4,991,366	-		GFF4991	0.40	-1.1
4,991,366	-		GFF4991	0.40	-0.7
4,991,373	-		GFF4991	0.41	-0.7
4,991,373	-		GFF4991	0.41	-0.3
4,991,373	-		GFF4991	0.41	+0.1
4,991,373	-		GFF4991	0.41	-0.9
4,991,373	-		GFF4991	0.41	+1.0
4,991,373	-		GFF4991	0.41	-0.9
4,991,394	-		GFF4991	0.45	+0.2
4,991,407	+		GFF4991	0.48	+1.5
4,991,407	+		GFF4991	0.48	+1.0
4,991,415	-		GFF4991	0.49	+0.5
4,991,421	+		GFF4991	0.50	+0.1
4,991,421	+		GFF4991	0.50	+0.5
4,991,421	+		GFF4991	0.50	-0.6
4,991,429	-		GFF4991	0.52	+0.3
4,991,429	-		GFF4991	0.52	-0.6
4,991,429	-		GFF4991	0.52	+0.7
4,991,429	-		GFF4991	0.52	+0.5
4,991,435	-		GFF4991	0.53	-0.3
4,991,449	+		GFF4991	0.56	-1.9
4,991,449	+		GFF4991	0.56	-0.8
4,991,449	+		GFF4991	0.56	+0.1
4,991,449	+		GFF4991	0.56	-0.7
4,991,449	+		GFF4991	0.56	-0.3
4,991,457	-		GFF4991	0.57	-1.2
4,991,457	-		GFF4991	0.57	+0.9
4,991,457	-		GFF4991	0.57	-1.7
4,991,457	-		GFF4991	0.57	+1.1
4,991,459	+		GFF4991	0.58	+0.5
4,991,459	+		GFF4991	0.58	+0.1
4,991,459	+		GFF4991	0.58	+0.6
4,991,459	+		GFF4991	0.58	-0.0
4,991,459	+		GFF4991	0.58	+1.4
4,991,463	+		GFF4991	0.58	+0.5
4,991,467	-		GFF4991	0.59	+0.3
4,991,467	-		GFF4991	0.59	+0.4
4,991,467	-		GFF4991	0.59	-0.0
4,991,467	-		GFF4991	0.59	-1.5
4,991,467	-		GFF4991	0.59	+1.0
4,991,467	-		GFF4991	0.59	-0.0
4,991,512	+		GFF4991	0.68	+0.0
4,991,520	-		GFF4991	0.70	-0.5
4,991,523	+		GFF4991	0.70	-0.0
4,991,530	-		GFF4991	0.72	+1.1
4,991,550	-		GFF4991	0.75	-0.4
4,991,550	-		GFF4991	0.75	+0.3
4,991,550	-		GFF4991	0.75	+0.9
4,991,586	-		GFF4991	0.82	-0.2
4,991,610	+		GFF4991	0.87	+0.7
4,991,610	+		GFF4991	0.87	-2.0
4,991,610	+		GFF4991	0.87	+1.0
4,991,618	-		GFF4991	0.89	-0.4
4,991,618	-		GFF4991	0.89	+0.9
4,991,618	-		GFF4991	0.89	-0.3
4,991,640	-				+0.2
4,991,643	+				+0.1
4,991,658	+				-0.7
4,991,670	+				-0.7
4,991,670	+				+1.5
4,991,670	+				+1.4
4,991,678	-				-0.4
4,991,685	+				+0.7
4,991,711	+				+0.3
4,991,746	+				-0.3
4,991,749	-				+0.2
4,991,749	-				+1.5
4,991,774	+				+0.2
4,991,783	+				-0.1
4,991,846	-				+1.9
4,991,857	+				+0.1
4,991,860	-				+0.1
4,991,860	-				-1.9
4,991,879	+				-1.1
4,991,887	+				-1.3
4,991,947	-		GFF4992	0.47	+0.9
4,992,040	-				+0.4
4,992,040	-				+1.5