Strain Fitness in Sphingobium sp. HT1-2 around GFF4980

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,978,534	-		GFF4978	0.73	+1.0
4,978,534	-		GFF4978	0.73	-0.1
4,978,534	-		GFF4978	0.73	-0.6
4,978,534	-		GFF4978	0.73	+0.5
4,978,534	-		GFF4978	0.73	+0.8
4,978,534	-		GFF4978	0.73	+1.7
4,978,534	-		GFF4978	0.73	+0.8
4,978,534	-		GFF4978	0.73	+0.1
4,978,539	+		GFF4978	0.74	-0.6
4,978,547	-		GFF4978	0.74	+0.3
4,978,558	+		GFF4978	0.75	+0.5
4,978,572	+		GFF4978	0.76	+0.8
4,978,575	+		GFF4978	0.76	-0.7
4,978,585	-		GFF4978	0.77	+0.1
4,978,616	+		GFF4978	0.79	+1.4
4,978,621	+		GFF4978	0.80	+1.6
4,978,624	-		GFF4978	0.80	+0.5
4,978,624	-		GFF4978	0.80	+0.4
4,978,631	-		GFF4978	0.80	+0.7
4,978,641	-		GFF4978	0.81	+0.3
4,978,641	-		GFF4978	0.81	+0.4
4,978,643	+		GFF4978	0.81	-0.0
4,978,663	+		GFF4978	0.83	-0.2
4,978,671	+		GFF4978	0.83	-0.7
4,978,671	-		GFF4978	0.83	+0.3
4,978,684	-		GFF4978	0.84	+1.2
4,978,703	+		GFF4978	0.85	+0.5
4,978,703	+		GFF4978	0.85	-0.3
4,978,738	+		GFF4978	0.88	+0.0
4,978,744	+		GFF4978	0.88	+0.8
4,978,744	+		GFF4978	0.88	+1.0
4,978,744	+		GFF4978	0.88	-0.7
4,978,746	-		GFF4978	0.88	+0.1
4,978,754	+		GFF4978	0.89	-0.3
4,978,754	+		GFF4978	0.89	-1.2
4,978,754	+		GFF4978	0.89	+0.4
4,978,754	+		GFF4978	0.89	+0.2
4,978,754	+		GFF4978	0.89	-2.2
4,978,754	+		GFF4978	0.89	-0.7
4,978,762	-		GFF4978	0.90	+0.6
4,978,762	-		GFF4978	0.90	+0.3
4,978,762	-		GFF4978	0.90	-0.0
4,978,762	-		GFF4978	0.90	+0.8
4,978,780	+				-1.7
4,978,829	-				+0.9
4,978,843	+				+0.7
4,978,843	+				-0.5
4,978,848	+				-0.2
4,978,848	+				-0.5
4,978,848	+				-0.4
4,978,848	+				-0.4
4,978,848	+				+1.1
4,978,856	-				+1.4
4,978,856	-				-0.7
4,978,856	-				-0.9
4,978,856	-				+0.8
4,978,856	-				-0.1
4,978,877	+				-0.5
4,978,877	+				+0.7
4,978,877	+				+0.7
4,978,877	+				+0.1
4,978,877	+				-0.5
4,978,877	+				-0.7
4,978,882	+				-0.9
4,978,882	+				+0.6
4,978,882	+				+0.4
4,978,885	-				-0.3
4,978,885	-				-2.3
4,978,885	-				-0.3
4,978,885	-				+1.2
4,978,885	-				-0.1
4,978,885	-				+0.8
4,978,885	-				+1.8
4,978,885	-				-1.0
4,978,887	+				-0.4
4,978,887	+				-1.9
4,978,887	+				+1.4
4,978,887	+				-0.4
4,978,887	+				-1.6
4,978,887	+				+0.0
4,978,887	+				-0.4
4,978,887	+				+1.0
4,978,887	+				+0.8
4,978,887	+				-1.0
4,978,887	+				+1.2
4,978,887	+				-0.9
4,978,889	+				+0.1
4,978,890	-				-0.4
4,978,895	-				+1.3
4,978,895	-				+1.1
4,978,895	-				+0.7
4,978,895	-				+0.1
4,978,895	-				-0.9
4,978,895	-				-1.5
4,978,909	+				-0.5
4,978,910	+				+1.2
4,978,918	-				-0.3
4,978,934	-				+0.3
4,978,936	+				+0.5
4,978,942	+				+1.7
4,978,995	-				-0.6
4,979,001	-				-1.8
4,979,003	-				+0.6
4,979,005	+				-0.2
4,979,028	-				+0.1
4,979,033	-				+0.8
4,979,066	-				+1.5
4,979,073	+				-0.6
4,979,080	+				+0.7
4,979,107	-		GFF4979	0.20	-1.2
4,979,114	+		GFF4979	0.24	+0.7
4,979,130	+		GFF4979	0.33	+0.3
4,979,130	+		GFF4979	0.33	-0.0
4,979,138	-		GFF4979	0.38	+0.2
4,979,138	-		GFF4979	0.38	-0.5
4,979,138	-		GFF4979	0.38	-0.4
4,979,141	+		GFF4979	0.40	-0.3
4,979,141	+		GFF4979	0.40	-0.7
4,979,141	+		GFF4979	0.40	-1.3
4,979,141	+		GFF4979	0.40	-0.1
4,979,141	+		GFF4979	0.40	-0.1
4,979,144	-		GFF4979	0.42	+0.9
4,979,149	-		GFF4979	0.44	-0.1
4,979,149	-		GFF4979	0.44	+0.5
4,979,149	-		GFF4979	0.44	+1.1
4,979,149	-		GFF4979	0.44	-1.9
4,979,149	-		GFF4979	0.44	-0.8
4,979,149	-		GFF4979	0.44	-2.0
4,979,171	-		GFF4979	0.57	-0.2
4,979,174	+		GFF4979	0.59	+1.0
4,979,178	-		GFF4979	0.61	-1.6
4,979,196	+		GFF4979	0.72	-2.2
4,979,204	-		GFF4979	0.77	-0.4
4,979,205	+		GFF4979	0.77	-0.8
4,979,215	+		GFF4979	0.83	-0.1
4,979,223	-		GFF4979	0.88	+1.4
4,979,223	-		GFF4979	0.88	+0.5
4,979,223	-		GFF4979	0.88	-2.3
4,979,297	-				+0.8
4,979,313	+				-0.7
4,979,313	+				+0.4
4,979,321	-				+0.5
4,979,382	+				-1.7
4,979,395	-				-0.6
4,979,403	-				+1.5
4,979,416	+				-2.6
4,979,418	+				-0.4
4,979,422	-				+0.7
4,979,422	-				+0.6
4,979,447	+				+0.5
4,979,447	+				-0.1
4,979,455	-				+0.4
4,979,455	-				+0.4
4,979,455	-				+0.4
4,979,491	-				+1.0
4,979,501	-				-1.2
4,979,501	-				-0.1
4,979,545	-				-0.5
4,979,551	+				-1.0
4,979,577	+				+0.2
4,979,590	+				+0.3
4,979,626	-		GFF4980	0.15	+1.6
4,979,626	-		GFF4980	0.15	+0.4
4,979,626	-		GFF4980	0.15	+1.2
4,979,628	+		GFF4980	0.15	+1.0
4,979,638	+		GFF4980	0.16	+0.4
4,979,680	+		GFF4980	0.23	-0.8
4,979,680	+		GFF4980	0.23	+0.4
4,979,680	+		GFF4980	0.23	+0.3
4,979,680	+		GFF4980	0.23	-0.8
4,979,681	-		GFF4980	0.23	+1.0
4,979,688	-		GFF4980	0.24	-0.7
4,979,688	-		GFF4980	0.24	-1.0
4,979,716	-		GFF4980	0.28	-0.0
4,979,732	+		GFF4980	0.30	-0.1
4,979,742	+		GFF4980	0.32	-0.8
4,979,750	-		GFF4980	0.33	-1.4
4,979,757	-		GFF4980	0.34	-0.4
4,979,757	-		GFF4980	0.34	-0.9
4,979,758	-		GFF4980	0.34	-0.7
4,979,790	-		GFF4980	0.39	+0.0
4,979,800	-		GFF4980	0.40	+1.0
4,979,827	+		GFF4980	0.44	-1.4
4,979,827	+		GFF4980	0.44	+0.7
4,979,834	+		GFF4980	0.45	-0.4
4,979,835	-		GFF4980	0.45	-0.9
4,979,835	-		GFF4980	0.45	-0.5
4,979,854	+		GFF4980	0.48	+1.3
4,979,859	-		GFF4980	0.49	-0.5
4,979,860	+		GFF4980	0.49	+0.9
4,979,862	-		GFF4980	0.49	-0.1
4,979,862	-		GFF4980	0.49	-0.6
4,979,876	+		GFF4980	0.52	+0.5
4,979,876	-		GFF4980	0.52	+0.2
4,979,881	+		GFF4980	0.52	-0.8
4,979,884	-		GFF4980	0.53	-0.2
4,979,884	-		GFF4980	0.53	+0.7
4,979,893	+		GFF4980	0.54	-1.7
4,979,901	-		GFF4980	0.55	+1.6
4,979,906	-		GFF4980	0.56	+0.1
4,979,924	+		GFF4980	0.59	-2.2
4,979,924	+		GFF4980	0.59	-0.9
4,979,931	+		GFF4980	0.60	-0.4
4,979,932	-		GFF4980	0.60	+0.7
4,979,944	+		GFF4980	0.62	+1.4
4,979,945	+		GFF4980	0.62	+0.6
4,979,952	-		GFF4980	0.63	-2.1
4,979,952	-		GFF4980	0.63	+0.0
4,979,952	-		GFF4980	0.63	+0.2
4,979,952	-		GFF4980	0.63	-0.1
4,979,952	-		GFF4980	0.63	+0.3
4,979,952	-		GFF4980	0.63	-0.3
4,979,952	-		GFF4980	0.63	+0.7
4,979,952	-		GFF4980	0.63	+0.2
4,979,952	-		GFF4980	0.63	+1.0
4,979,953	-		GFF4980	0.63	-2.4
4,979,962	+		GFF4980	0.64	-0.5
4,980,026	+		GFF4980	0.74	+0.8
4,980,035	+		GFF4980	0.75	+0.6
4,980,054	+		GFF4980	0.78	+0.4
4,980,107	+		GFF4980	0.86	-0.4
4,980,125	+		GFF4980	0.88	-1.2
4,980,133	-		GFF4980	0.90	+0.1
4,980,133	-		GFF4980	0.90	-0.0
4,980,140	+				-1.0
4,980,143	+				-2.2
4,980,143	+				-0.7
4,980,143	+				+0.1
4,980,156	-				+0.3
4,980,156	-				-1.9
4,980,156	-				+0.7
4,980,161	-				-0.0
4,980,186	-				+1.4
4,980,195	-				-0.0
4,980,205	+				+0.4
4,980,214	+				+0.6
4,980,215	+				+1.1
4,980,215	+				+1.2
4,980,222	-				-1.8
4,980,223	-				-3.1
4,980,223	-				+0.5
4,980,277	+				-0.2
4,980,277	+				+1.6
4,980,277	+				-1.0
4,980,294	+				+0.5
4,980,318	+				-0.8
4,980,326	-				-0.2
4,980,326	-				-1.0
4,980,339	+				-0.0
4,980,339	+				-0.2
4,980,347	-				-0.9
4,980,347	-				+0.7
4,980,347	-				+0.5
4,980,347	-				-0.4
4,980,347	-				+1.7
4,980,347	-				-0.9
4,980,352	-				+0.0
4,980,398	-				-0.0
4,980,404	+				+0.4
4,980,450	-				+1.5
4,980,457	+				-1.0
4,980,457	+				-1.7
4,980,465	-				+0.5
4,980,465	-				-1.8
4,980,465	-				-1.4
4,980,657	+		GFF4981	0.44	+0.2
4,980,657	+		GFF4981	0.44	+0.6
4,980,659	-		GFF4981	0.45	+1.3
4,980,830	+				+0.1
4,980,846	-				+0.6
4,980,911	+				-0.6
4,980,911	+				+0.6
4,980,919	+				-0.3
4,980,919	-				-0.1
4,980,923	+				-0.6
4,980,929	-				+0.1
4,980,929	-				-1.8
4,980,965	-				+1.5
4,981,035	+				+1.4
4,981,038	-				-1.0
4,981,058	-				+1.7
4,981,063	+				-2.4
4,981,063	+				-0.7
4,981,063	+				+0.4
4,981,071	+				+0.4
4,981,071	-				-0.3
4,981,073	-				+0.9
4,981,076	+				+0.4
4,981,093	+				+0.3
4,981,093	+				-0.4
4,981,095	+				-0.3
4,981,103	-				+0.1
4,981,107	-				-0.7
4,981,125	-				+0.2
4,981,127	+				-0.0
4,981,130	-				-0.1
4,981,132	+				-0.9
4,981,135	-				-1.9
4,981,135	-				+0.7
4,981,148	+				-2.8
4,981,168	+				+1.1
4,981,168	+				-2.3
4,981,168	+				-1.4
4,981,192	+				+1.2
4,981,192	-				+0.7
4,981,200	-				+0.6