Strain Fitness in Sphingobium sp. HT1-2 around GFF4976

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,974,345	-		GFF4974	0.84	-2.8
4,974,345	-		GFF4974	0.84	+0.5
4,974,345	-		GFF4974	0.84	+1.0
4,974,355	+		GFF4974	0.87	-0.2
4,974,357	+		GFF4974	0.87	+1.1
4,974,364	+		GFF4974	0.89	+1.1
4,974,364	+		GFF4974	0.89	-0.6
4,974,364	+		GFF4974	0.89	-0.0
4,974,364	+		GFF4974	0.89	-0.3
4,974,366	-		GFF4974	0.90	-0.1
4,974,372	-				+0.9
4,974,379	+				-0.0
4,974,379	+				+0.6
4,974,379	+				-0.1
4,974,379	+				-0.4
4,974,379	+				+0.6
4,974,387	-				-0.2
4,974,387	-				-0.0
4,974,387	-				+0.6
4,974,387	-				-0.0
4,974,436	+				-0.2
4,974,436	+				+0.3
4,974,444	-				+0.7
4,974,444	-				+0.5
4,974,446	+				+1.1
4,974,462	-				+0.1
4,974,475	+				-0.5
4,974,475	+				-0.5
4,974,475	+				-0.5
4,974,475	+				-0.6
4,974,483	-				+0.7
4,974,485	-				+0.6
4,974,497	+		GFF4975	0.10	-1.3
4,974,527	-		GFF4975	0.15	+0.5
4,974,529	-		GFF4975	0.15	+1.0
4,974,534	-		GFF4975	0.16	-0.9
4,974,534	-		GFF4975	0.16	-0.1
4,974,534	-		GFF4975	0.16	+0.2
4,974,573	+		GFF4975	0.22	+1.0
4,974,610	-		GFF4975	0.27	-2.0
4,974,626	-		GFF4975	0.30	-1.0
4,974,626	-		GFF4975	0.30	+0.6
4,974,643	-		GFF4975	0.32	-0.7
4,974,752	+		GFF4975	0.49	+1.2
4,975,030	+				+1.2
4,975,030	+				-0.9
4,975,038	-				+0.5
4,975,038	-				+1.4
4,975,040	-				-0.0
4,975,043	-				+0.5
4,975,072	+				+1.4
4,975,078	+				-0.9
4,975,078	+				+1.4
4,975,085	+				+1.6
4,975,093	-				+0.5
4,975,093	-				+0.1
4,975,093	-				+1.0
4,975,109	-				+0.5
4,975,116	+				+0.6
4,975,132	+				-0.6
4,975,151	-				-0.2
4,975,160	-				+0.3
4,975,205	+				+0.7
4,975,243	+				-1.2
4,975,245	-				+1.0
4,975,270	+				+0.5
4,975,278	-				+0.4
4,975,278	-				+1.4
4,975,370	+				+1.1
4,975,391	+				+0.7
4,975,405	+		GFF4976	0.12	+0.9
4,975,426	-		GFF4976	0.14	+0.4
4,975,440	+		GFF4976	0.16	-2.1
4,975,440	+		GFF4976	0.16	+0.9
4,975,446	-		GFF4976	0.17	+0.8
4,975,448	-		GFF4976	0.17	-0.6
4,975,448	-		GFF4976	0.17	+2.1
4,975,448	-		GFF4976	0.17	-0.3
4,975,448	-		GFF4976	0.17	-0.8
4,975,448	-		GFF4976	0.17	+0.8
4,975,448	-		GFF4976	0.17	-0.1
4,975,448	-		GFF4976	0.17	-1.2
4,975,450	+		GFF4976	0.18	+0.6
4,975,450	+		GFF4976	0.18	+0.2
4,975,450	+		GFF4976	0.18	+0.2
4,975,450	+		GFF4976	0.18	-0.4
4,975,450	+		GFF4976	0.18	+0.3
4,975,450	+		GFF4976	0.18	-0.7
4,975,450	+		GFF4976	0.18	+0.5
4,975,458	-		GFF4976	0.19	+1.1
4,975,458	-		GFF4976	0.19	+0.1
4,975,472	+		GFF4976	0.21	+0.2
4,975,474	+		GFF4976	0.21	-0.1
4,975,474	+		GFF4976	0.21	+1.5
4,975,501	+		GFF4976	0.24	+0.2
4,975,501	-		GFF4976	0.24	-1.5
4,975,518	+		GFF4976	0.27	+0.1
4,975,532	-		GFF4976	0.28	-0.0
4,975,548	-		GFF4976	0.31	+0.1
4,975,572	+		GFF4976	0.34	+0.7
4,975,582	+		GFF4976	0.35	+0.3
4,975,582	+		GFF4976	0.35	+0.1
4,975,590	-		GFF4976	0.36	+0.9
4,975,600	-		GFF4976	0.37	+0.4
4,975,600	-		GFF4976	0.37	-0.6
4,975,638	+		GFF4976	0.42	+1.1
4,975,641	-		GFF4976	0.43	-0.9
4,975,650	+		GFF4976	0.44	+0.2
4,975,650	+		GFF4976	0.44	+0.4
4,975,650	+		GFF4976	0.44	+0.5
4,975,653	-		GFF4976	0.44	+1.2
4,975,658	-		GFF4976	0.45	-0.6
4,975,661	+		GFF4976	0.45	+0.4
4,975,698	+		GFF4976	0.50	+1.0
4,975,706	-		GFF4976	0.51	-0.6
4,975,716	-		GFF4976	0.53	-0.7
4,975,727	+		GFF4976	0.54	-2.0
4,975,737	+		GFF4976	0.55	-0.3
4,975,745	-		GFF4976	0.57	-0.1
4,975,745	-		GFF4976	0.57	+0.6
4,975,750	-		GFF4976	0.57	-0.9
4,975,750	-		GFF4976	0.57	-1.3
4,975,753	-		GFF4976	0.58	-0.4
4,975,787	+		GFF4976	0.62	+0.7
4,975,788	+		GFF4976	0.62	+0.2
4,975,788	+		GFF4976	0.62	-1.6
4,975,788	+		GFF4976	0.62	+1.5
4,975,807	+		GFF4976	0.65	-0.2
4,975,854	+		GFF4976	0.71	+0.4
4,975,856	-		GFF4976	0.71	+0.6
4,975,864	+		GFF4976	0.72	-0.0
4,975,864	+		GFF4976	0.72	+0.8
4,975,864	+		GFF4976	0.72	-1.1
4,975,864	+		GFF4976	0.72	+1.1
4,975,864	+		GFF4976	0.72	-0.3
4,975,874	+		GFF4976	0.74	-1.7
4,975,874	+		GFF4976	0.74	-0.1
4,975,874	+		GFF4976	0.74	-0.1
4,975,874	+		GFF4976	0.74	-0.9
4,975,874	+		GFF4976	0.74	-1.5
4,975,874	+		GFF4976	0.74	-0.7
4,975,874	+		GFF4976	0.74	-1.5
4,975,874	+		GFF4976	0.74	+0.3
4,975,874	+		GFF4976	0.74	-0.0
4,975,874	+		GFF4976	0.74	-0.6
4,975,874	+		GFF4976	0.74	-0.0
4,975,882	-		GFF4976	0.75	-0.8
4,975,882	-		GFF4976	0.75	+0.6
4,975,882	-		GFF4976	0.75	-1.3
4,975,882	-		GFF4976	0.75	+1.1
4,975,882	-		GFF4976	0.75	+1.3
4,975,882	-		GFF4976	0.75	+1.1
4,975,909	-		GFF4976	0.78	+0.9
4,975,923	+		GFF4976	0.80	+0.0
4,975,928	+		GFF4976	0.81	+0.3
4,975,962	-		GFF4976	0.85	-0.2
4,975,966	+		GFF4976	0.86	+0.6
4,975,974	-		GFF4976	0.87	-0.0
4,975,976	-		GFF4976	0.87	-1.5
4,975,984	-		GFF4976	0.88	+1.2
4,975,992	-		GFF4976	0.89	+0.2
4,976,016	+				+1.0
4,976,016	+				-0.9
4,976,063	+				+0.7
4,976,100	+				+2.0
4,976,112	+				+0.6
4,976,120	-				-0.5
4,976,120	-				-1.6
4,976,122	+				-0.3
4,976,122	+				-0.1
4,976,130	-				+0.7
4,976,132	-				+0.3
4,976,152	+				-1.7
4,976,162	-				-0.1
4,976,173	+				-0.5
4,976,173	+				+0.4
4,976,195	+				+1.1
4,976,213	+				+0.3
4,976,215	-				-0.2
4,976,216	-				+0.6
4,976,220	-				+0.1
4,976,225	-				-0.0
4,976,251	+				+1.1
4,976,251	+				+0.6
4,976,251	+				+0.5
4,976,251	+				+0.1
4,976,251	+				+0.4
4,976,251	+				+0.6
4,976,251	+				-0.1
4,976,251	-				+0.7
4,976,259	-		GFF4977	0.10	+1.1
4,976,259	-		GFF4977	0.10	-1.5
4,976,259	-		GFF4977	0.10	-1.2
4,976,259	-		GFF4977	0.10	+0.1
4,976,268	+		GFF4977	0.11	-0.0
4,976,276	-		GFF4977	0.12	+0.7
4,976,276	-		GFF4977	0.12	-0.3
4,976,276	-		GFF4977	0.12	-0.5
4,976,302	+		GFF4977	0.14	+0.8
4,976,325	+		GFF4977	0.15	+0.6
4,976,390	+		GFF4977	0.20	+0.7
4,976,404	-		GFF4977	0.21	-0.3
4,976,416	+		GFF4977	0.22	+0.4
4,976,416	+		GFF4977	0.22	+0.5
4,976,416	+		GFF4977	0.22	+0.1
4,976,416	+		GFF4977	0.22	+1.6
4,976,422	-		GFF4977	0.22	-0.5
4,976,424	-		GFF4977	0.22	-1.6
4,976,432	-		GFF4977	0.23	+0.1
4,976,432	-		GFF4977	0.23	+0.7
4,976,432	-		GFF4977	0.23	-1.7
4,976,441	-		GFF4977	0.24	-0.6
4,976,448	+		GFF4977	0.24	-0.1
4,976,454	-		GFF4977	0.25	-1.7
4,976,463	+		GFF4977	0.25	-0.5
4,976,463	+		GFF4977	0.25	-0.2
4,976,467	+		GFF4977	0.26	-1.2
4,976,473	+		GFF4977	0.26	-0.5
4,976,473	+		GFF4977	0.26	-1.0
4,976,473	+		GFF4977	0.26	-2.2
4,976,481	-		GFF4977	0.27	-2.0
4,976,481	-		GFF4977	0.27	+1.1
4,976,488	+		GFF4977	0.27	-0.9
4,976,491	-		GFF4977	0.27	-0.1
4,976,496	-		GFF4977	0.28	-1.1
4,976,521	-		GFF4977	0.29	-0.1
4,976,594	+		GFF4977	0.35	+0.7
4,976,611	+		GFF4977	0.36	-0.2
4,976,615	+		GFF4977	0.36	+0.3
4,976,618	-		GFF4977	0.37	-0.0
4,976,623	-		GFF4977	0.37	+0.1
4,976,623	-		GFF4977	0.37	-0.4
4,976,626	+		GFF4977	0.37	-0.2
4,976,634	-		GFF4977	0.38	+0.2
4,976,648	+		GFF4977	0.39	-1.5
4,976,648	+		GFF4977	0.39	-0.4
4,976,648	+		GFF4977	0.39	+1.1
4,976,648	+		GFF4977	0.39	+0.4
4,976,648	+		GFF4977	0.39	+0.9
4,976,648	+		GFF4977	0.39	-0.1
4,976,648	+		GFF4977	0.39	+0.3
4,976,648	+		GFF4977	0.39	-0.7
4,976,648	+		GFF4977	0.39	-0.3
4,976,648	+		GFF4977	0.39	-0.5
4,976,648	+		GFF4977	0.39	+0.1
4,976,655	+		GFF4977	0.39	+0.9
4,976,656	-		GFF4977	0.39	-0.7
4,976,656	-		GFF4977	0.39	-0.1
4,976,656	-		GFF4977	0.39	+0.6
4,976,656	-		GFF4977	0.39	+0.6
4,976,656	-		GFF4977	0.39	+0.5
4,976,656	-		GFF4977	0.39	-1.2
4,976,656	-		GFF4977	0.39	-0.7
4,976,656	-		GFF4977	0.39	+0.4
4,976,656	-		GFF4977	0.39	-0.5
4,976,656	-		GFF4977	0.39	+1.1
4,976,656	-		GFF4977	0.39	-0.3
4,976,656	-		GFF4977	0.39	-0.3
4,976,656	-		GFF4977	0.39	-0.0
4,976,656	-		GFF4977	0.39	-0.1
4,976,656	-		GFF4977	0.39	-0.0
4,976,656	-		GFF4977	0.39	+1.1
4,976,688	+		GFF4977	0.42	-0.8
4,976,725	+		GFF4977	0.44	-0.4
4,976,725	+		GFF4977	0.44	-0.2
4,976,733	-		GFF4977	0.45	-0.0
4,976,733	-		GFF4977	0.45	+1.2
4,976,733	-		GFF4977	0.45	+0.5
4,976,735	+		GFF4977	0.45	+1.2
4,976,735	-		GFF4977	0.45	+0.1
4,976,739	-		GFF4977	0.45	+0.3
4,976,758	+		GFF4977	0.47	+0.9
4,976,763	-		GFF4977	0.47	-1.1
4,976,775	-		GFF4977	0.48	-1.4
4,976,786	+		GFF4977	0.49	-0.0
4,976,810	-		GFF4977	0.50	+1.0
4,976,812	+		GFF4977	0.51	-0.5
4,976,820	-		GFF4977	0.51	+0.7
4,976,827	+		GFF4977	0.52	-0.6
4,976,830	-		GFF4977	0.52	+0.2
4,976,832	-		GFF4977	0.52	-1.3
4,976,862	+		GFF4977	0.54	-2.0
4,976,862	+		GFF4977	0.54	+0.3
4,976,874	-		GFF4977	0.55	+0.3
4,976,893	+		GFF4977	0.56	-0.8
4,976,898	+		GFF4977	0.57	-0.3
4,976,898	+		GFF4977	0.57	-0.2
4,976,898	+		GFF4977	0.57	-1.5
4,976,898	+		GFF4977	0.57	-0.0
4,976,898	+		GFF4977	0.57	+0.2
4,976,898	+		GFF4977	0.57	+0.7
4,976,898	+		GFF4977	0.57	+1.3
4,976,905	+		GFF4977	0.57	-1.4
4,976,906	-		GFF4977	0.57	-0.8
4,976,906	-		GFF4977	0.57	+0.8
4,976,906	-		GFF4977	0.57	-0.1
4,976,906	-		GFF4977	0.57	-0.3
4,976,906	-		GFF4977	0.57	+1.1
4,976,945	-		GFF4977	0.60	+0.8
4,976,954	-		GFF4977	0.61	+0.9
4,976,963	+		GFF4977	0.62	+1.1
4,976,966	-		GFF4977	0.62	-0.1
4,976,966	-		GFF4977	0.62	-0.3
4,976,986	-		GFF4977	0.63	-0.3
4,976,988	+		GFF4977	0.63	-0.3
4,976,996	-		GFF4977	0.64	+1.2
4,976,996	-		GFF4977	0.64	-2.3
4,976,997	+		GFF4977	0.64	+0.7
4,977,004	-		GFF4977	0.65	+1.1
4,977,017	+		GFF4977	0.66	+1.4
4,977,017	+		GFF4977	0.66	-0.7
4,977,022	+		GFF4977	0.66	+0.3
4,977,022	+		GFF4977	0.66	+0.4
4,977,023	+		GFF4977	0.66	+0.5
4,977,024	-		GFF4977	0.66	-0.5
4,977,043	-		GFF4977	0.67	+1.0
4,977,044	+		GFF4977	0.67	-0.6
4,977,045	+		GFF4977	0.68	-0.0
4,977,048	-		GFF4977	0.68	-0.5
4,977,052	-		GFF4977	0.68	-1.4
4,977,053	-		GFF4977	0.68	+0.1