Strain Fitness in Sphingobium sp. HT1-2 around GFF4963

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,958,964	+		GFF4962	0.18	-0.9
4,958,964	+		GFF4962	0.18	+0.1
4,958,971	+		GFF4962	0.19	-1.2
4,958,971	+		GFF4962	0.19	-1.5
4,958,972	-		GFF4962	0.19	-0.1
4,958,972	-		GFF4962	0.19	-1.5
4,958,974	+		GFF4962	0.19	+0.7
4,958,979	-		GFF4962	0.19	-1.1
4,959,026	+		GFF4962	0.23	+0.4
4,959,046	-		GFF4962	0.25	+0.1
4,959,048	+		GFF4962	0.25	+0.1
4,959,129	-		GFF4962	0.32	-1.4
4,959,141	+		GFF4962	0.34	+1.6
4,959,144	-		GFF4962	0.34	-0.5
4,959,177	+		GFF4962	0.37	-0.5
4,959,205	+		GFF4962	0.39	+1.2
4,959,205	+		GFF4962	0.39	-1.0
4,959,226	+		GFF4962	0.41	-2.4
4,959,300	+		GFF4962	0.47	+0.8
4,959,300	+		GFF4962	0.47	-2.3
4,959,307	-		GFF4962	0.48	-1.3
4,959,338	-		GFF4962	0.51	+0.7
4,959,340	+		GFF4962	0.51	+0.9
4,959,348	-		GFF4962	0.52	-1.7
4,959,373	+		GFF4962	0.54	-0.7
4,959,381	-		GFF4962	0.54	-0.5
4,959,381	-		GFF4962	0.54	+0.6
4,959,394	-		GFF4962	0.56	+0.2
4,959,394	-		GFF4962	0.56	-0.4
4,959,394	-		GFF4962	0.56	-0.8
4,959,402	-		GFF4962	0.56	-2.2
4,959,407	-		GFF4962	0.57	-0.1
4,959,407	-		GFF4962	0.57	-0.1
4,959,424	+		GFF4962	0.58	+1.2
4,959,424	+		GFF4962	0.58	-0.5
4,959,424	+		GFF4962	0.58	+0.1
4,959,424	+		GFF4962	0.58	+1.1
4,959,424	+		GFF4962	0.58	-0.8
4,959,431	+		GFF4962	0.59	-0.9
4,959,442	+		GFF4962	0.60	-0.4
4,959,478	-		GFF4962	0.63	+0.6
4,959,487	+		GFF4962	0.64	+1.4
4,959,487	+		GFF4962	0.64	-2.8
4,959,501	+		GFF4962	0.65	-0.9
4,959,504	-		GFF4962	0.65	+0.1
4,959,510	+		GFF4962	0.66	-3.1
4,959,510	+		GFF4962	0.66	-0.1
4,959,510	+		GFF4962	0.66	-2.0
4,959,510	+		GFF4962	0.66	-1.3
4,959,510	+		GFF4962	0.66	-1.0
4,959,518	-		GFF4962	0.66	-1.0
4,959,523	-		GFF4962	0.67	+1.3
4,959,528	-		GFF4962	0.67	+0.3
4,959,538	+		GFF4962	0.68	-1.8
4,959,595	+		GFF4962	0.73	-0.3
4,959,599	+		GFF4962	0.73	-0.9
4,959,607	-		GFF4962	0.74	-1.6
4,959,607	-		GFF4962	0.74	+1.7
4,959,607	-		GFF4962	0.74	-1.3
4,959,607	-		GFF4962	0.74	-0.2
4,959,607	-		GFF4962	0.74	+0.3
4,959,607	-		GFF4962	0.74	+0.1
4,959,609	+		GFF4962	0.74	-0.5
4,959,647	-		GFF4962	0.78	-0.9
4,959,669	-		GFF4962	0.79	-0.9
4,959,676	-		GFF4962	0.80	+0.4
4,959,688	+		GFF4962	0.81	-0.0
4,959,718	+		GFF4962	0.84	+0.5
4,959,718	+		GFF4962	0.84	-1.1
4,959,759	+		GFF4962	0.87	-0.4
4,959,786	-		GFF4962	0.90	+0.1
4,959,789	+		GFF4962	0.90	+0.2
4,959,794	+				+0.1
4,959,794	+				+0.5
4,959,794	+				+0.5
4,959,802	-				+0.8
4,959,802	-				+0.2
4,959,802	-				-1.2
4,959,807	-				+1.0
4,959,807	-				-1.4
4,959,807	-				-0.3
4,959,857	-				-0.1
4,959,857	-				-0.8
4,959,867	-				+0.5
4,959,867	-				-0.4
4,959,943	+				-1.0
4,959,955	+				-0.6
4,959,979	+				-0.1
4,959,979	+				-1.2
4,959,987	-				+0.5
4,960,014	+				+0.1
4,960,049	-				-0.6
4,960,057	+				+0.7
4,960,063	+				-0.8
4,960,063	+				-1.7
4,960,065	-				-1.0
4,960,086	-				+0.2
4,960,111	+				-0.8
4,960,168	-		GFF4963	0.13	-0.5
4,960,300	+		GFF4963	0.20	-1.0
4,960,300	+		GFF4963	0.20	+0.1
4,960,308	-		GFF4963	0.20	-1.3
4,960,319	+		GFF4963	0.21	+0.4
4,960,324	+		GFF4963	0.21	-1.8
4,960,327	-		GFF4963	0.21	-0.6
4,960,332	-		GFF4963	0.22	-1.3
4,960,332	-		GFF4963	0.22	-0.7
4,960,347	+		GFF4963	0.23	-0.8
4,960,378	-		GFF4963	0.24	-1.6
4,960,417	+		GFF4963	0.26	-0.2
4,960,425	-		GFF4963	0.27	-0.8
4,960,425	-		GFF4963	0.27	+0.5
4,960,454	-		GFF4963	0.28	-0.1
4,960,455	-		GFF4963	0.28	-0.3
4,960,472	-		GFF4963	0.29	+0.0
4,960,498	-		GFF4963	0.31	-1.0
4,960,524	-		GFF4963	0.32	-0.3
4,960,628	+		GFF4963	0.38	+1.0
4,960,694	-		GFF4963	0.42	-0.2
4,960,733	+		GFF4963	0.44	-0.0
4,960,756	-		GFF4963	0.45	+0.0
4,960,757	+		GFF4963	0.45	-0.3
4,960,769	+		GFF4963	0.46	-0.9
4,960,769	+		GFF4963	0.46	-0.6
4,960,769	+		GFF4963	0.46	-1.5
4,960,775	-		GFF4963	0.46	-0.5
4,960,777	+		GFF4963	0.46	-1.3
4,960,785	-		GFF4963	0.47	-0.9
4,960,785	-		GFF4963	0.47	-0.9
4,960,785	-		GFF4963	0.47	-0.3
4,960,798	-		GFF4963	0.47	-1.0
4,960,798	-		GFF4963	0.47	+0.6
4,960,798	-		GFF4963	0.47	-0.5
4,960,809	+		GFF4963	0.48	-1.5
4,960,817	-		GFF4963	0.48	-0.8
4,960,817	-		GFF4963	0.48	-0.4
4,960,817	-		GFF4963	0.48	-0.0
4,960,853	+		GFF4963	0.50	-0.1
4,960,884	+		GFF4963	0.52	-1.6
4,960,886	-		GFF4963	0.52	+1.0
4,960,889	+		GFF4963	0.52	+0.9
4,960,914	-		GFF4963	0.54	+0.8
4,960,915	+		GFF4963	0.54	+0.5
4,960,917	+		GFF4963	0.54	-1.0
4,960,923	+		GFF4963	0.54	+1.4
4,960,924	+		GFF4963	0.54	-1.2
4,960,932	-		GFF4963	0.55	-0.5
4,960,942	+		GFF4963	0.55	-0.1
4,960,942	+		GFF4963	0.55	-0.9
4,960,950	-		GFF4963	0.56	+0.3
4,960,950	-		GFF4963	0.56	-0.8
4,960,964	-		GFF4963	0.56	-0.8
4,960,974	-		GFF4963	0.57	-0.0
4,960,979	-		GFF4963	0.57	-0.3
4,960,981	+		GFF4963	0.57	-0.2
4,960,981	+		GFF4963	0.57	-1.3
4,960,981	+		GFF4963	0.57	-0.1
4,960,981	+		GFF4963	0.57	-0.0
4,960,981	+		GFF4963	0.57	-1.6
4,960,981	+		GFF4963	0.57	-1.5
4,960,981	+		GFF4963	0.57	-0.8
4,960,981	+		GFF4963	0.57	-2.8
4,960,981	+		GFF4963	0.57	-0.4
4,960,989	-		GFF4963	0.58	+0.3
4,960,989	-		GFF4963	0.58	-1.5
4,960,989	-		GFF4963	0.58	-0.7
4,960,989	-		GFF4963	0.58	+0.7
4,960,989	-		GFF4963	0.58	-1.5
4,960,989	-		GFF4963	0.58	-0.8
4,960,989	-		GFF4963	0.58	-0.6
4,960,989	-		GFF4963	0.58	-1.1
4,960,989	-		GFF4963	0.58	-0.4
4,960,989	-		GFF4963	0.58	+0.3
4,960,989	-		GFF4963	0.58	-0.0
4,960,989	-		GFF4963	0.58	+0.7
4,960,989	-		GFF4963	0.58	+0.3
4,960,989	-		GFF4963	0.58	-1.1
4,960,994	-		GFF4963	0.58	-2.1
4,961,027	+		GFF4963	0.60	-0.8
4,961,027	+		GFF4963	0.60	-0.9
4,961,027	+		GFF4963	0.60	+0.2
4,961,027	+		GFF4963	0.60	-1.4
4,961,027	+		GFF4963	0.60	-1.2
4,961,027	+		GFF4963	0.60	+0.5
4,961,027	+		GFF4963	0.60	+1.0
4,961,027	+		GFF4963	0.60	-0.3
4,961,027	+		GFF4963	0.60	-0.8
4,961,027	+		GFF4963	0.60	+0.1
4,961,027	+		GFF4963	0.60	-0.7
4,961,027	+		GFF4963	0.60	+1.1
4,961,027	+		GFF4963	0.60	-0.6
4,961,028	+		GFF4963	0.60	-0.7
4,961,030	-		GFF4963	0.60	-1.8
4,961,035	-		GFF4963	0.60	+0.2
4,961,035	-		GFF4963	0.60	-0.6
4,961,035	-		GFF4963	0.60	-2.1
4,961,035	-		GFF4963	0.60	-1.7
4,961,035	-		GFF4963	0.60	-0.2
4,961,035	-		GFF4963	0.60	-0.6
4,961,035	-		GFF4963	0.60	+0.3
4,961,035	-		GFF4963	0.60	-1.9
4,961,035	-		GFF4963	0.60	-0.7
4,961,035	-		GFF4963	0.60	-1.7
4,961,037	+		GFF4963	0.60	-0.7
4,961,037	+		GFF4963	0.60	-1.0
4,961,037	+		GFF4963	0.60	-1.3
4,961,037	+		GFF4963	0.60	-3.0
4,961,045	-		GFF4963	0.61	-0.7
4,961,045	-		GFF4963	0.61	+1.5
4,961,045	-		GFF4963	0.61	+0.2
4,961,045	-		GFF4963	0.61	-0.9
4,961,045	-		GFF4963	0.61	+0.4
4,961,045	-		GFF4963	0.61	-0.1
4,961,055	-		GFF4963	0.61	-0.3
4,961,057	+		GFF4963	0.61	-1.9
4,961,068	+		GFF4963	0.62	-2.3
4,961,068	+		GFF4963	0.62	-1.3
4,961,076	-		GFF4963	0.62	-1.8
4,961,076	-		GFF4963	0.62	-0.3
4,961,088	-		GFF4963	0.63	+0.2
4,961,151	+		GFF4963	0.67	+0.3
4,961,159	-		GFF4963	0.67	-0.3
4,961,159	-		GFF4963	0.67	-0.2
4,961,193	+		GFF4963	0.69	+0.3
4,961,197	-		GFF4963	0.69	-0.1
4,961,258	+		GFF4963	0.72	+0.3
4,961,329	+		GFF4963	0.76	-0.0
4,961,329	+		GFF4963	0.76	-1.7
4,961,329	+		GFF4963	0.76	-2.2
4,961,329	+		GFF4963	0.76	+0.7
4,961,329	+		GFF4963	0.76	-0.6
4,961,337	-		GFF4963	0.77	+0.6
4,961,337	-		GFF4963	0.77	-0.6
4,961,337	-		GFF4963	0.77	-1.7
4,961,350	+		GFF4963	0.78	-1.7
4,961,357	-		GFF4963	0.78	-0.5
4,961,358	-		GFF4963	0.78	-1.0
4,961,386	-		GFF4963	0.79	-0.1
4,961,410	+		GFF4963	0.81	-1.0
4,961,410	+		GFF4963	0.81	-0.2
4,961,415	+		GFF4963	0.81	+0.6
4,961,418	-		GFF4963	0.81	-1.4
4,961,433	-		GFF4963	0.82	-0.8
4,961,433	-		GFF4963	0.82	-0.1
4,961,433	-		GFF4963	0.82	-2.5
4,961,443	-		GFF4963	0.83	+0.6
4,961,443	-		GFF4963	0.83	+0.7
4,961,454	+		GFF4963	0.83	-0.7
4,961,468	-		GFF4963	0.84	+1.3
4,961,476	+		GFF4963	0.84	-2.5
4,961,476	+		GFF4963	0.84	+2.1
4,961,476	+		GFF4963	0.84	+0.6
4,961,560	-		GFF4963	0.89	-0.8
4,961,643	-				-0.7
4,961,648	-				-0.5
4,961,723	-				-0.8
4,961,817	+				-0.2
4,961,817	+				+0.7
4,961,848	+				-0.3
4,961,848	+				-1.0
4,961,906	+		GFF4964	0.12	-1.1
4,961,914	-		GFF4964	0.13	-0.8
4,961,918	+		GFF4964	0.13	-0.1
4,961,918	+		GFF4964	0.13	-0.5
4,961,926	-		GFF4964	0.14	-0.2
4,961,950	-		GFF4964	0.17	-0.3
4,961,950	-		GFF4964	0.17	-1.3
4,961,950	-		GFF4964	0.17	-1.0
4,961,950	-		GFF4964	0.17	-1.0
4,961,971	-		GFF4964	0.20	-0.8
4,961,983	-		GFF4964	0.22	-0.2
4,961,994	+		GFF4964	0.23	-0.3
4,962,000	+		GFF4964	0.24	-1.4
4,962,034	-		GFF4964	0.28	+0.3
4,962,040	-		GFF4964	0.29	-0.7
4,962,066	-		GFF4964	0.33	+0.3
4,962,068	+		GFF4964	0.33	+0.4
4,962,071	-		GFF4964	0.33	-1.2
4,962,076	-		GFF4964	0.34	-1.7
4,962,076	-		GFF4964	0.34	-3.4
4,962,101	-		GFF4964	0.37	-0.8
4,962,117	+		GFF4964	0.39	-0.4
4,962,125	-		GFF4964	0.40	-1.0
4,962,125	-		GFF4964	0.40	-1.8
4,962,127	+		GFF4964	0.41	-1.0
4,962,135	-		GFF4964	0.42	+0.1
4,962,135	-		GFF4964	0.42	-1.5
4,962,152	+		GFF4964	0.44	-0.7
4,962,152	+		GFF4964	0.44	-0.1
4,962,154	+		GFF4964	0.44	-0.2
4,962,156	+		GFF4964	0.44	-3.4
4,962,160	-		GFF4964	0.45	-0.4
4,962,160	-		GFF4964	0.45	-0.8
4,962,160	-		GFF4964	0.45	-0.8
4,962,160	-		GFF4964	0.45	+0.1
4,962,172	-		GFF4964	0.46	+0.1
4,962,172	-		GFF4964	0.46	-1.1
4,962,172	-		GFF4964	0.46	-0.2
4,962,186	-		GFF4964	0.48	-1.5
4,962,186	-		GFF4964	0.48	-2.0
4,962,191	-		GFF4964	0.49	-0.3
4,962,191	-		GFF4964	0.49	-0.5
4,962,191	-		GFF4964	0.49	-1.6
4,962,191	-		GFF4964	0.49	-0.9
4,962,191	-		GFF4964	0.49	-0.8
4,962,192	-		GFF4964	0.49	+0.2
4,962,221	-		GFF4964	0.53	+0.3
4,962,221	-		GFF4964	0.53	-0.1
4,962,235	+		GFF4964	0.55	+0.1
4,962,237	+		GFF4964	0.55	+0.4
4,962,250	-		GFF4964	0.57	-0.8
4,962,274	+		GFF4964	0.60	-2.4
4,962,292	+		GFF4964	0.62	-2.4
4,962,297	+		GFF4964	0.63	-0.5
4,962,350	+		GFF4964	0.70	-1.2
4,962,366	+		GFF4964	0.72	+0.3
4,962,372	+		GFF4964	0.73	-0.0
4,962,387	+		GFF4964	0.75	-1.0
4,962,387	+		GFF4964	0.75	+0.7
4,962,387	+		GFF4964	0.75	-1.0
4,962,387	+		GFF4964	0.75	-0.1
4,962,387	+		GFF4964	0.75	-0.5
4,962,387	+		GFF4964	0.75	-0.7
4,962,387	+		GFF4964	0.75	-0.4
4,962,387	+		GFF4964	0.75	-1.9
4,962,387	+		GFF4964	0.75	-1.4
4,962,392	+		GFF4964	0.75	-0.1
4,962,395	-		GFF4964	0.76	-0.0
4,962,395	-		GFF4964	0.76	-0.8
4,962,395	-		GFF4964	0.76	-0.7
4,962,395	-		GFF4964	0.76	-1.4
4,962,395	-		GFF4964	0.76	-1.3
4,962,395	-		GFF4964	0.76	-0.0
4,962,405	-		GFF4964	0.77	-1.0
4,962,410	-		GFF4964	0.78	-1.5
4,962,444	-		GFF4964	0.82	-1.9
4,962,453	-		GFF4964	0.83	-1.3
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