Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF495 and GFF496 are separated by 208 nucleotides GFF496 and GFF497 are separated by 11 nucleotides GFF497 and GFF498 are separated by 93 nucleotides
GFF495 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7), at 493,668 to 494,951
GFF495
GFF496 - hypothetical protein, at 495,160 to 495,897
GFF496
GFF497 - HNH endonuclease family protein, at 495,909 to 496,475
GFF497
GFF498 - Glutamyl-Q tRNA(Asp) synthetase, at 496,569 to 497,474
GFF498
Position (kb) 495
496 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 495.067 kb on + strand at 495.088 kb on - strand at 495.102 kb on + strand at 495.155 kb on + strand at 495.162 kb on - strand at 495.200 kb on - strand at 495.208 kb on - strand at 495.237 kb on - strand, within GFF496 at 495.274 kb on + strand, within GFF496 at 495.287 kb on + strand, within GFF496 at 495.305 kb on - strand, within GFF496 at 495.328 kb on + strand, within GFF496 at 495.328 kb on + strand, within GFF496 at 495.328 kb on + strand, within GFF496 at 495.344 kb on + strand, within GFF496 at 495.344 kb on + strand, within GFF496 at 495.344 kb on + strand, within GFF496 at 495.347 kb on - strand, within GFF496 at 495.352 kb on - strand, within GFF496 at 495.352 kb on - strand, within GFF496 at 495.352 kb on - strand, within GFF496 at 495.352 kb on - strand, within GFF496 at 495.411 kb on + strand, within GFF496 at 495.419 kb on - strand, within GFF496 at 495.424 kb on - strand, within GFF496 at 495.424 kb on - strand, within GFF496 at 495.429 kb on - strand, within GFF496 at 495.433 kb on + strand, within GFF496 at 495.433 kb on + strand, within GFF496 at 495.444 kb on - strand, within GFF496 at 495.462 kb on + strand, within GFF496 at 495.462 kb on + strand, within GFF496 at 495.464 kb on - strand, within GFF496 at 495.485 kb on + strand, within GFF496 at 495.490 kb on + strand, within GFF496 at 495.493 kb on - strand, within GFF496 at 495.519 kb on - strand, within GFF496 at 495.534 kb on + strand, within GFF496 at 495.537 kb on - strand, within GFF496 at 495.546 kb on + strand, within GFF496 at 495.554 kb on - strand, within GFF496 at 495.554 kb on - strand, within GFF496 at 495.599 kb on - strand, within GFF496 at 495.599 kb on - strand, within GFF496 at 495.599 kb on - strand, within GFF496 at 495.603 kb on + strand, within GFF496 at 495.616 kb on - strand, within GFF496 at 495.617 kb on - strand, within GFF496 at 495.620 kb on + strand, within GFF496 at 495.620 kb on + strand, within GFF496 at 495.620 kb on + strand, within GFF496 at 495.620 kb on + strand, within GFF496 at 495.620 kb on + strand, within GFF496 at 495.627 kb on - strand, within GFF496 at 495.631 kb on - strand, within GFF496 at 495.637 kb on + strand, within GFF496 at 495.648 kb on + strand, within GFF496 at 495.669 kb on - strand, within GFF496 at 495.680 kb on + strand, within GFF496 at 495.688 kb on - strand, within GFF496 at 495.706 kb on + strand, within GFF496 at 495.727 kb on - strand, within GFF496 at 495.742 kb on - strand, within GFF496 at 495.747 kb on - strand, within GFF496 at 495.810 kb on + strand, within GFF496 at 495.810 kb on + strand, within GFF496 at 495.816 kb on - strand, within GFF496 at 495.818 kb on - strand, within GFF496 at 495.827 kb on - strand at 495.832 kb on - strand at 495.832 kb on - strand at 495.832 kb on - strand at 495.832 kb on - strand at 495.862 kb on + strand at 495.862 kb on + strand at 495.868 kb on + strand at 495.868 kb on + strand at 495.868 kb on + strand at 495.868 kb on + strand at 495.868 kb on + strand at 495.868 kb on + strand at 495.870 kb on - strand at 495.876 kb on - strand at 495.876 kb on - strand at 495.876 kb on - strand at 495.876 kb on - strand at 495.876 kb on - strand at 495.876 kb on - strand at 495.907 kb on + strand at 495.907 kb on + strand at 495.907 kb on + strand at 495.912 kb on + strand at 495.912 kb on + strand at 495.915 kb on - strand at 496.016 kb on - strand, within GFF497 at 496.035 kb on - strand, within GFF497 at 496.043 kb on - strand, within GFF497 at 496.063 kb on - strand, within GFF497 at 496.068 kb on + strand, within GFF497 at 496.106 kb on + strand, within GFF497 at 496.109 kb on + strand, within GFF497 at 496.109 kb on + strand, within GFF497 at 496.124 kb on - strand, within GFF497 at 496.127 kb on - strand, within GFF497 at 496.147 kb on - strand, within GFF497 at 496.155 kb on + strand, within GFF497 at 496.155 kb on + strand, within GFF497 at 496.155 kb on + strand, within GFF497 at 496.163 kb on - strand, within GFF497 at 496.205 kb on + strand, within GFF497 at 496.218 kb on - strand, within GFF497 at 496.229 kb on - strand, within GFF497 at 496.234 kb on - strand, within GFF497 at 496.234 kb on - strand, within GFF497 at 496.236 kb on - strand, within GFF497 at 496.243 kb on - strand, within GFF497 at 496.250 kb on - strand, within GFF497 at 496.250 kb on - strand, within GFF497 at 496.252 kb on + strand, within GFF497 at 496.252 kb on + strand, within GFF497 at 496.256 kb on + strand, within GFF497 at 496.277 kb on - strand, within GFF497 at 496.281 kb on - strand, within GFF497 at 496.292 kb on + strand, within GFF497 at 496.292 kb on + strand, within GFF497 at 496.292 kb on + strand, within GFF497 at 496.292 kb on + strand, within GFF497 at 496.292 kb on + strand, within GFF497 at 496.294 kb on - strand, within GFF497 at 496.299 kb on + strand, within GFF497 at 496.299 kb on + strand, within GFF497 at 496.300 kb on - strand, within GFF497 at 496.300 kb on - strand, within GFF497 at 496.300 kb on - strand, within GFF497 at 496.307 kb on - strand, within GFF497 at 496.307 kb on - strand, within GFF497 at 496.307 kb on - strand, within GFF497 at 496.316 kb on + strand, within GFF497 at 496.330 kb on + strand, within GFF497 at 496.370 kb on + strand, within GFF497 at 496.382 kb on + strand, within GFF497 at 496.382 kb on + strand, within GFF497 at 496.382 kb on + strand, within GFF497 at 496.383 kb on + strand, within GFF497 at 496.388 kb on + strand, within GFF497 at 496.391 kb on + strand, within GFF497 at 496.393 kb on + strand, within GFF497 at 496.396 kb on - strand, within GFF497 at 496.399 kb on - strand, within GFF497 at 496.399 kb on - strand, within GFF497 at 496.408 kb on + strand, within GFF497 at 496.408 kb on + strand, within GFF497 at 496.411 kb on - strand, within GFF497 at 496.411 kb on - strand, within GFF497 at 496.411 kb on - strand, within GFF497 at 496.413 kb on - strand, within GFF497 at 496.416 kb on - strand, within GFF497 at 496.416 kb on - strand, within GFF497 at 496.420 kb on + strand at 496.440 kb on + strand at 496.460 kb on + strand at 496.465 kb on + strand at 496.469 kb on + strand at 496.469 kb on + strand at 496.470 kb on + strand at 496.470 kb on + strand at 496.481 kb on + strand at 496.481 kb on + strand at 496.489 kb on - strand at 496.489 kb on - strand at 496.535 kb on - strand at 496.535 kb on - strand at 496.535 kb on - strand at 496.535 kb on - strand at 496.537 kb on + strand at 496.572 kb on + strand at 496.572 kb on + strand at 496.572 kb on + strand at 496.572 kb on + strand at 496.575 kb on - strand at 496.575 kb on - strand at 496.580 kb on - strand at 496.580 kb on - strand at 496.580 kb on - strand at 496.587 kb on + strand at 496.587 kb on + strand at 496.641 kb on + strand at 496.649 kb on - strand at 496.649 kb on - strand at 496.654 kb on - strand at 496.676 kb on + strand, within GFF498 at 496.682 kb on + strand, within GFF498 at 496.682 kb on + strand, within GFF498 at 496.684 kb on - strand, within GFF498 at 496.690 kb on - strand, within GFF498 at 496.696 kb on + strand, within GFF498 at 496.696 kb on + strand, within GFF498 at 496.704 kb on - strand, within GFF498 at 496.704 kb on - strand, within GFF498 at 496.704 kb on - strand, within GFF498 at 496.704 kb on - strand, within GFF498 at 496.704 kb on - strand, within GFF498 at 496.724 kb on - strand, within GFF498 at 496.737 kb on - strand, within GFF498 at 496.746 kb on + strand, within GFF498 at 496.746 kb on - strand, within GFF498 at 496.746 kb on - strand, within GFF498 at 496.767 kb on + strand, within GFF498 at 496.767 kb on + strand, within GFF498 at 496.767 kb on + strand, within GFF498 at 496.775 kb on - strand, within GFF498 at 496.775 kb on - strand, within GFF498 at 496.775 kb on - strand, within GFF498 at 496.777 kb on + strand, within GFF498 at 496.777 kb on + strand, within GFF498 at 496.780 kb on - strand, within GFF498 at 496.785 kb on - strand, within GFF498 at 496.785 kb on - strand, within GFF498 at 496.787 kb on + strand, within GFF498 at 496.794 kb on + strand, within GFF498 at 496.800 kb on - strand, within GFF498 at 496.800 kb on - strand, within GFF498 at 496.800 kb on - strand, within GFF498 at 496.842 kb on + strand, within GFF498 at 496.842 kb on + strand, within GFF498 at 496.847 kb on + strand, within GFF498 at 496.850 kb on - strand, within GFF498 at 496.861 kb on + strand, within GFF498 at 496.866 kb on + strand, within GFF498 at 496.869 kb on - strand, within GFF498 at 496.869 kb on - strand, within GFF498 at 496.871 kb on + strand, within GFF498 at 496.871 kb on + strand, within GFF498 at 496.871 kb on + strand, within GFF498 at 496.874 kb on - strand, within GFF498 at 496.874 kb on - strand, within GFF498 at 496.874 kb on - strand, within GFF498 at 496.879 kb on - strand, within GFF498 at 496.879 kb on - strand, within GFF498 at 496.879 kb on - strand, within GFF498 at 496.879 kb on - strand, within GFF498 at 496.879 kb on - strand, within GFF498 at 496.879 kb on - strand, within GFF498 at 496.879 kb on - strand, within GFF498 at 496.879 kb on - strand, within GFF498
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 495,067 + -0.8 495,088 - +1.6 495,102 + -0.2 495,155 + -0.1 495,162 - -0.1 495,200 - -0.2 495,208 - -0.5 495,237 - GFF496 0.10 -0.7 495,274 + GFF496 0.15 -0.1 495,287 + GFF496 0.17 +1.4 495,305 - GFF496 0.20 -2.0 495,328 + GFF496 0.23 +1.3 495,328 + GFF496 0.23 -0.1 495,328 + GFF496 0.23 -1.4 495,344 + GFF496 0.25 +0.2 495,344 + GFF496 0.25 -0.6 495,344 + GFF496 0.25 +1.3 495,347 - GFF496 0.25 +0.4 495,352 - GFF496 0.26 -0.6 495,352 - GFF496 0.26 -1.5 495,352 - GFF496 0.26 -0.2 495,352 - GFF496 0.26 -1.8 495,411 + GFF496 0.34 -0.2 495,419 - GFF496 0.35 +0.1 495,424 - GFF496 0.36 -0.5 495,424 - GFF496 0.36 -0.8 495,429 - GFF496 0.36 +1.4 495,433 + GFF496 0.37 +1.3 495,433 + GFF496 0.37 -0.3 495,444 - GFF496 0.38 +0.8 495,462 + GFF496 0.41 -1.8 495,462 + GFF496 0.41 +0.2 495,464 - GFF496 0.41 -1.0 495,485 + GFF496 0.44 -1.8 495,490 + GFF496 0.45 +0.5 495,493 - GFF496 0.45 -1.0 495,519 - GFF496 0.49 -0.0 495,534 + GFF496 0.51 -1.3 495,537 - GFF496 0.51 -1.4 495,546 + GFF496 0.52 -0.2 495,554 - GFF496 0.53 +0.3 495,554 - GFF496 0.53 -1.2 495,599 - GFF496 0.59 +0.4 495,599 - GFF496 0.59 +0.8 495,599 - GFF496 0.59 -0.7 495,603 + GFF496 0.60 -0.2 495,616 - GFF496 0.62 +0.2 495,617 - GFF496 0.62 -0.4 495,620 + GFF496 0.62 -1.1 495,620 + GFF496 0.62 +1.2 495,620 + GFF496 0.62 -1.0 495,620 + GFF496 0.62 +0.0 495,620 + GFF496 0.62 -0.4 495,627 - GFF496 0.63 +0.3 495,631 - GFF496 0.64 -0.5 495,637 + GFF496 0.65 +0.1 495,648 + GFF496 0.66 +0.6 495,669 - GFF496 0.69 +0.7 495,680 + GFF496 0.70 +0.6 495,688 - GFF496 0.72 +0.2 495,706 + GFF496 0.74 -0.2 495,727 - GFF496 0.77 -1.4 495,742 - GFF496 0.79 -0.8 495,747 - GFF496 0.80 -0.1 495,810 + GFF496 0.88 -1.2 495,810 + GFF496 0.88 +1.3 495,816 - GFF496 0.89 -0.8 495,818 - GFF496 0.89 -0.3 495,827 - -0.5 495,832 - +0.8 495,832 - +0.4 495,832 - -0.1 495,832 - -1.6 495,862 + +0.1 495,862 + -0.7 495,868 + +0.3 495,868 + -0.9 495,868 + -0.8 495,868 + -0.8 495,868 + -2.1 495,868 + -1.4 495,870 - -0.3 495,876 - -0.6 495,876 - +0.6 495,876 - -1.2 495,876 - +0.8 495,876 - +0.5 495,876 - -1.2 495,907 + +0.8 495,907 + -0.7 495,907 + -0.8 495,912 + -0.3 495,912 + -0.3 495,915 - -0.2 496,016 - GFF497 0.19 +0.4 496,035 - GFF497 0.22 +1.8 496,043 - GFF497 0.24 -1.0 496,063 - GFF497 0.27 -0.3 496,068 + GFF497 0.28 +0.1 496,106 + GFF497 0.35 -0.5 496,109 + GFF497 0.35 -1.9 496,109 + GFF497 0.35 +0.2 496,124 - GFF497 0.38 +0.7 496,127 - GFF497 0.38 -0.9 496,147 - GFF497 0.42 -0.1 496,155 + GFF497 0.43 +0.3 496,155 + GFF497 0.43 +0.8 496,155 + GFF497 0.43 -2.1 496,163 - GFF497 0.45 +0.0 496,205 + GFF497 0.52 -1.1 496,218 - GFF497 0.54 -0.9 496,229 - GFF497 0.56 -0.8 496,234 - GFF497 0.57 -0.2 496,234 - GFF497 0.57 +0.4 496,236 - GFF497 0.58 +0.6 496,243 - GFF497 0.59 -0.3 496,250 - GFF497 0.60 -1.5 496,250 - GFF497 0.60 -1.9 496,252 + GFF497 0.60 -0.2 496,252 + GFF497 0.60 +0.7 496,256 + GFF497 0.61 -0.5 496,277 - GFF497 0.65 +0.4 496,281 - GFF497 0.66 +0.2 496,292 + GFF497 0.68 -0.9 496,292 + GFF497 0.68 -1.4 496,292 + GFF497 0.68 -2.4 496,292 + GFF497 0.68 +0.8 496,292 + GFF497 0.68 -0.3 496,294 - GFF497 0.68 -1.5 496,299 + GFF497 0.69 -2.3 496,299 + GFF497 0.69 -1.8 496,300 - GFF497 0.69 +0.8 496,300 - GFF497 0.69 -1.3 496,300 - GFF497 0.69 -2.0 496,307 - GFF497 0.70 +0.0 496,307 - GFF497 0.70 -0.5 496,307 - GFF497 0.70 +1.1 496,316 + GFF497 0.72 -3.3 496,330 + GFF497 0.74 -0.5 496,370 + GFF497 0.81 -1.0 496,382 + GFF497 0.83 -0.9 496,382 + GFF497 0.83 +1.7 496,382 + GFF497 0.83 -0.1 496,383 + GFF497 0.84 -1.1 496,388 + GFF497 0.84 -1.7 496,391 + GFF497 0.85 +0.3 496,393 + GFF497 0.85 -0.7 496,396 - GFF497 0.86 -1.1 496,399 - GFF497 0.86 -0.5 496,399 - GFF497 0.86 -0.0 496,408 + GFF497 0.88 +0.0 496,408 + GFF497 0.88 -0.8 496,411 - GFF497 0.89 -0.7 496,411 - GFF497 0.89 -0.1 496,411 - GFF497 0.89 -0.9 496,413 - GFF497 0.89 +0.8 496,416 - GFF497 0.89 -0.0 496,416 - GFF497 0.89 -1.8 496,420 + +1.4 496,440 + -2.8 496,460 + +0.8 496,465 + -0.1 496,469 + -0.1 496,469 + +0.0 496,470 + +0.3 496,470 + +0.7 496,481 + -1.2 496,481 + -1.8 496,489 - -0.1 496,489 - +0.3 496,535 - -0.9 496,535 - +0.8 496,535 - -0.3 496,535 - -0.2 496,537 + -0.8 496,572 + +0.4 496,572 + +0.2 496,572 + +0.3 496,572 + +0.4 496,575 - -0.2 496,575 - +0.2 496,580 - +0.1 496,580 - -1.0 496,580 - -0.4 496,587 + -3.1 496,587 + +0.2 496,641 + +0.5 496,649 - -0.2 496,649 - -0.8 496,654 - -0.4 496,676 + GFF498 0.12 -0.1 496,682 + GFF498 0.12 -1.4 496,682 + GFF498 0.12 +0.4 496,684 - GFF498 0.13 -0.1 496,690 - GFF498 0.13 -2.2 496,696 + GFF498 0.14 -0.2 496,696 + GFF498 0.14 -1.3 496,704 - GFF498 0.15 -1.2 496,704 - GFF498 0.15 -1.4 496,704 - GFF498 0.15 -1.8 496,704 - GFF498 0.15 +1.1 496,704 - GFF498 0.15 +0.9 496,724 - GFF498 0.17 -1.4 496,737 - GFF498 0.19 +0.2 496,746 + GFF498 0.20 +0.1 496,746 - GFF498 0.20 -0.0 496,746 - GFF498 0.20 +0.5 496,767 + GFF498 0.22 +0.4 496,767 + GFF498 0.22 -0.6 496,767 + GFF498 0.22 -1.4 496,775 - GFF498 0.23 +0.9 496,775 - GFF498 0.23 -0.1 496,775 - GFF498 0.23 +0.6 496,777 + GFF498 0.23 -0.7 496,777 + GFF498 0.23 -2.2 496,780 - GFF498 0.23 +0.0 496,785 - GFF498 0.24 -1.2 496,785 - GFF498 0.24 -1.4 496,787 + GFF498 0.24 -0.3 496,794 + GFF498 0.25 -0.7 496,800 - GFF498 0.25 -0.7 496,800 - GFF498 0.25 +0.1 496,800 - GFF498 0.25 -0.5 496,842 + GFF498 0.30 -0.4 496,842 + GFF498 0.30 +0.6 496,847 + GFF498 0.31 +0.6 496,850 - GFF498 0.31 +0.5 496,861 + GFF498 0.32 -1.4 496,866 + GFF498 0.33 +0.6 496,869 - GFF498 0.33 -2.0 496,869 - GFF498 0.33 -0.1 496,871 + GFF498 0.33 -0.6 496,871 + GFF498 0.33 -1.4 496,871 + GFF498 0.33 +0.9 496,874 - GFF498 0.34 +0.3 496,874 - GFF498 0.34 -2.4 496,874 - GFF498 0.34 -0.5 496,879 - GFF498 0.34 -0.7 496,879 - GFF498 0.34 -1.9 496,879 - GFF498 0.34 -1.8 496,879 - GFF498 0.34 +0.2 496,879 - GFF498 0.34 -0.1 496,879 - GFF498 0.34 -0.7 496,879 - GFF498 0.34 -1.2 496,879 - GFF498 0.34 -0.8
Or see this region's nucleotide sequence