Strain Fitness in Sphingobium sp. HT1-2 around GFF4942

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,931,638	-		GFF4941	0.20	-1.1
4,931,638	-		GFF4941	0.20	+0.2
4,931,657	-		GFF4941	0.22	-1.9
4,931,677	+		GFF4941	0.24	+0.9
4,931,677	+		GFF4941	0.24	-1.6
4,931,685	-		GFF4941	0.25	+0.2
4,931,685	-		GFF4941	0.25	-0.6
4,931,685	-		GFF4941	0.25	-0.1
4,931,721	-		GFF4941	0.28	+0.9
4,931,755	-		GFF4941	0.32	-0.5
4,931,805	-		GFF4941	0.37	+0.1
4,931,812	+		GFF4941	0.37	+0.3
4,931,814	+		GFF4941	0.37	-1.0
4,931,884	+		GFF4941	0.44	-1.8
4,931,884	+		GFF4941	0.44	-1.7
4,931,885	-		GFF4941	0.45	-1.7
4,931,892	-		GFF4941	0.45	-0.6
4,931,899	+		GFF4941	0.46	-0.1
4,931,901	+		GFF4941	0.46	-0.0
4,931,903	+		GFF4941	0.46	-0.7
4,931,907	-		GFF4941	0.47	-1.0
4,931,907	-		GFF4941	0.47	-1.0
4,931,910	+		GFF4941	0.47	-1.1
4,931,910	+		GFF4941	0.47	-2.2
4,931,918	-		GFF4941	0.48	+0.0
4,931,918	-		GFF4941	0.48	-0.3
4,931,921	+		GFF4941	0.48	-1.6
4,931,962	+		GFF4941	0.52	-0.2
4,931,962	+		GFF4941	0.52	-0.4
4,931,962	+		GFF4941	0.52	-1.4
4,931,970	-		GFF4941	0.53	-1.0
4,931,985	+		GFF4941	0.54	-3.4
4,931,998	+		GFF4941	0.56	-0.0
4,932,023	-		GFF4941	0.58	-1.4
4,932,123	+		GFF4941	0.68	-0.7
4,932,123	+		GFF4941	0.68	-1.4
4,932,128	+		GFF4941	0.69	-0.6
4,932,128	+		GFF4941	0.69	-0.7
4,932,132	-		GFF4941	0.69	-0.3
4,932,148	+		GFF4941	0.71	-1.7
4,932,162	-		GFF4941	0.72	-0.3
4,932,182	+		GFF4941	0.74	-0.6
4,932,192	+		GFF4941	0.75	+0.0
4,932,192	-		GFF4941	0.75	+0.6
4,932,192	-		GFF4941	0.75	-1.1
4,932,210	-		GFF4941	0.77	+0.0
4,932,210	-		GFF4941	0.77	-1.9
4,932,256	+		GFF4941	0.82	+0.5
4,932,272	+		GFF4941	0.83	+0.4
4,932,273	+		GFF4941	0.83	-0.1
4,932,281	-		GFF4941	0.84	+0.7
4,932,282	-		GFF4941	0.84	-0.6
4,932,296	+		GFF4941	0.86	-0.5
4,932,296	+		GFF4941	0.86	-0.4
4,932,296	+		GFF4941	0.86	+0.4
4,932,304	-		GFF4941	0.86	-1.6
4,932,304	-		GFF4941	0.86	+0.4
4,932,308	+		GFF4941	0.87	-2.3
4,932,332	+		GFF4941	0.89	+0.6
4,932,353	+				-3.5
4,932,353	+				-1.4
4,932,359	-				-0.9
4,932,359	-				+0.1
4,932,366	+				+0.9
4,932,367	-				+0.3
4,932,374	-				-2.0
4,932,374	-				-1.7
4,932,381	+				-0.1
4,932,385	+				+0.9
4,932,385	+				-0.5
4,932,385	+				+0.5
4,932,385	+				-0.3
4,932,385	+				-0.5
4,932,385	+				-0.5
4,932,385	+				-0.3
4,932,391	-				+0.7
4,932,393	-				-2.3
4,932,393	-				-2.4
4,932,393	-				-0.8
4,932,393	-				-0.8
4,932,393	-				+1.1
4,932,393	-				-0.5
4,932,393	-				+0.5
4,932,393	-				-1.6
4,932,401	+				+1.0
4,932,401	+				-1.7
4,932,433	-				-2.0
4,932,449	+				-1.1
4,932,451	+				-1.5
4,932,457	-				+0.7
4,932,459	+				-0.7
4,932,459	+				-0.7
4,932,462	-				-0.3
4,932,468	-				-0.9
4,932,547	+				+0.1
4,932,549	+				-0.6
4,932,549	+				-0.7
4,932,549	+				-0.1
4,932,552	+				-0.6
4,932,555	-				-1.8
4,932,555	-				-0.0
4,932,557	-				+0.3
4,932,557	-				-0.5
4,932,559	+				-1.6
4,932,571	+				-1.0
4,932,572	+				-0.7
4,932,579	-				-0.5
4,932,579	-				-1.2
4,932,579	-				-1.5
4,932,579	-				+0.5
4,932,580	+				+0.2
4,932,582	+				-0.1
4,932,582	+				-1.8
4,932,585	+				-0.6
4,932,590	-				+0.6
4,932,590	-				-1.2
4,932,590	-				+0.7
4,932,590	-				+0.7
4,932,600	-				+1.2
4,932,617	+				-0.3
4,932,617	+				+0.5
4,932,617	+				+0.6
4,932,617	+				-0.7
4,932,625	-				-0.2
4,932,625	-				-0.3
4,932,638	-				-2.0
4,932,706	+				-1.5
4,932,711	+				-0.3
4,932,712	+				-1.0
4,932,733	+		GFF4942	0.13	-0.6
4,932,739	-		GFF4942	0.13	-1.9
4,932,741	-		GFF4942	0.14	-1.4
4,932,775	+		GFF4942	0.18	+0.2
4,932,816	-		GFF4942	0.23	+0.0
4,932,849	+		GFF4942	0.28	-0.6
4,932,851	-		GFF4942	0.28	-0.3
4,932,876	+		GFF4942	0.31	-1.5
4,932,900	+		GFF4942	0.34	-0.1
4,932,913	-		GFF4942	0.36	-0.3
4,932,939	-		GFF4942	0.39	-0.6
4,932,960	-		GFF4942	0.42	-0.8
4,932,967	-		GFF4942	0.43	-1.7
4,932,996	-		GFF4942	0.46	+0.7
4,933,005	-		GFF4942	0.48	-0.9
4,933,014	+		GFF4942	0.49	-0.2
4,933,016	+		GFF4942	0.49	-0.8
4,933,023	+		GFF4942	0.50	-2.0
4,933,042	-		GFF4942	0.52	-1.7
4,933,063	+		GFF4942	0.55	-0.1
4,933,063	+		GFF4942	0.55	+0.2
4,933,077	+		GFF4942	0.57	-0.6
4,933,085	-		GFF4942	0.58	+0.4
4,933,093	-		GFF4942	0.59	-0.4
4,933,151	+		GFF4942	0.66	-0.6
4,933,161	+		GFF4942	0.68	-0.5
4,933,161	+		GFF4942	0.68	-1.0
4,933,259	-		GFF4942	0.80	-1.4
4,933,269	-		GFF4942	0.82	+0.5
4,933,279	+		GFF4942	0.83	+0.5
4,933,280	+		GFF4942	0.83	+0.4
4,933,286	+		GFF4942	0.84	-0.5
4,933,288	-		GFF4942	0.84	-0.1
4,933,334	-				-0.5
4,933,383	+				+0.5
4,933,398	-				-1.4
4,933,404	+				-2.1
4,933,414	+				-1.1
4,933,431	-				+0.3
4,933,471	+				-1.8
4,933,476	+				-0.8
4,933,479	+				-0.8
4,933,481	+				-0.4
4,933,487	+				+0.3
4,933,489	+				-0.8
4,933,514	-				-0.7
4,933,517	+				-0.5
4,933,523	+				-0.8
4,933,523	+				-1.0
4,933,526	-				-1.9
4,933,526	-				+1.0
4,933,528	+				-0.3
4,933,528	+				-2.4
4,933,528	+				+0.3
4,933,531	-				-1.3
4,933,531	-				-0.3
4,933,536	-				+0.5
4,933,536	-				-0.6
4,933,536	-				-0.1
4,933,536	-				-0.4
4,933,555	+				-2.8
4,933,586	-		GFF4943	0.15	-1.6
4,933,586	-		GFF4943	0.15	-0.7
4,933,586	-		GFF4943	0.15	+0.1
4,933,586	-		GFF4943	0.15	-0.8
4,933,586	-		GFF4943	0.15	-0.8
4,933,593	+		GFF4943	0.17	-1.0
4,933,596	-		GFF4943	0.17	-0.8
4,933,597	+		GFF4943	0.18	-0.4
4,933,601	-		GFF4943	0.19	+0.7
4,933,622	-		GFF4943	0.24	-0.6
4,933,630	+		GFF4943	0.25	-0.0
4,933,630	+		GFF4943	0.25	-1.3
4,933,638	-		GFF4943	0.27	+0.6
4,933,638	-		GFF4943	0.27	-0.1
4,933,657	+		GFF4943	0.32	+0.1
4,933,662	+		GFF4943	0.33	+0.1
4,933,673	+		GFF4943	0.35	-1.2
4,933,678	+		GFF4943	0.37	-0.8
4,933,722	+		GFF4943	0.47	-2.5
4,933,740	-		GFF4943	0.51	+1.3
4,933,741	-		GFF4943	0.51	+0.0
4,933,775	+		GFF4943	0.59	-2.2
4,933,794	-		GFF4943	0.64	-0.9
4,933,814	+		GFF4943	0.68	-0.7
4,933,820	-		GFF4943	0.70	-2.5
4,933,826	+		GFF4943	0.71	-0.8
4,933,857	+		GFF4943	0.78	-1.5
4,933,866	-		GFF4943	0.80	-0.3
4,933,867	-		GFF4943	0.81	-0.6
4,933,887	+		GFF4943	0.85	-1.2
4,933,893	-		GFF4943	0.87	-1.2
4,933,895	+		GFF4943	0.87	-0.9
4,933,897	+		GFF4943	0.88	-0.8
4,933,905	-		GFF4943	0.90	-1.5
4,933,944	+				+1.0
4,933,952	-				-1.4
4,933,952	-				-0.7
4,933,952	-				+0.6
4,933,963	+				-0.3
4,933,963	+				-0.6
4,933,963	+				+0.2
4,933,963	+				-1.1
4,933,963	+				-0.1
4,933,963	+				+0.4
4,933,963	+				-1.5
4,933,963	+				-1.1
4,933,963	+				-0.2
4,933,971	-				-1.3
4,933,971	-				-2.2
4,933,971	-				-0.5
4,933,973	+				-2.7
4,933,976	-				-1.3
4,933,993	+				-0.4
4,933,995	+				-0.6
4,933,995	+				-0.6
4,934,006	+				-0.0
4,934,032	+				-3.0
4,934,032	+				-0.3
4,934,032	+				+1.2
4,934,032	+				-0.9
4,934,032	+				-2.8
4,934,032	+				+0.8
4,934,032	+				+0.1
4,934,032	+				-0.4
4,934,032	+				-0.3
4,934,037	+				-0.2
4,934,040	-				-1.6
4,934,040	-				-0.1
4,934,040	-				-0.5
4,934,040	-				+0.3
4,934,040	-				-0.3
4,934,040	-				-0.4
4,934,040	-				-0.9
4,934,040	-				-0.8
4,934,042	+				-1.5
4,934,042	+				-0.3
4,934,045	-				+0.4
4,934,047	+				-0.5
4,934,047	+				-2.4
4,934,047	+				-1.1
4,934,047	+				-1.6
4,934,049	+				-0.7
4,934,050	-				+0.5
4,934,050	-				+0.1
4,934,055	-				+0.0
4,934,055	-				+0.5
4,934,055	-				-1.6
4,934,055	-				-1.1
4,934,056	+				+1.7
4,934,064	-				+0.6
4,934,064	-				-1.0
4,934,069	-				+0.9
4,934,078	+				-0.3
4,934,097	+				-0.9
4,934,113	+				-1.3
4,934,121	-				-1.5
4,934,168	+				-2.5
4,934,168	+				+0.2
4,934,172	+				-0.3
4,934,176	-				-0.0
4,934,176	-				+0.3
4,934,176	-				-1.6
4,934,186	-				-1.7
4,934,196	-				-1.5
4,934,196	-				-0.4
4,934,201	-				-0.3
4,934,215	+				-0.1
4,934,223	-				-1.8
4,934,223	-				-1.8
4,934,241	+				-0.5
4,934,249	-				-0.6
4,934,294	-				-1.0
4,934,321	+				-0.9
4,934,329	-				-1.1
4,934,345	-				-1.2
4,934,370	-		GFF4944	0.11	+0.5
4,934,370	-		GFF4944	0.11	-0.5
4,934,379	+		GFF4944	0.13	+0.1
4,934,383	-		GFF4944	0.14	-2.7
4,934,384	+		GFF4944	0.14	-0.0
4,934,384	+		GFF4944	0.14	-1.5
4,934,387	-		GFF4944	0.15	-1.2
4,934,395	+		GFF4944	0.16	-2.0
4,934,402	-		GFF4944	0.18	-0.1