Strain Fitness in Sphingobium sp. HT1-2 around GFF4941

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,930,447	+		GFF4938	0.43	-0.5
4,930,453	-		GFF4938	0.44	-2.3
4,930,453	-		GFF4938	0.44	-0.5
4,930,455	+		GFF4938	0.44	-1.2
4,930,455	+		GFF4938	0.44	-1.9
4,930,456	+		GFF4938	0.44	-1.9
4,930,458	-		GFF4938	0.45	+0.1
4,930,464	-		GFF4938	0.45	+0.8
4,930,511	+		GFF4938	0.51	+0.4
4,930,524	+		GFF4938	0.53	-0.7
4,930,527	-		GFF4938	0.53	-2.1
4,930,537	-		GFF4938	0.55	+0.8
4,930,539	+		GFF4938	0.55	+0.3
4,930,578	+		GFF4938	0.60	-0.8
4,930,578	+		GFF4938	0.60	-0.7
4,930,578	+		GFF4938	0.60	-2.1
4,930,586	-		GFF4938	0.61	+1.0
4,930,586	-		GFF4938	0.61	-0.7
4,930,586	-		GFF4938	0.61	-0.6
4,930,592	-		GFF4938	0.62	+0.1
4,930,600	-		GFF4938	0.63	-0.7
4,930,603	+		GFF4938	0.63	-0.6
4,930,611	-		GFF4938	0.64	-2.0
4,930,621	+		GFF4938	0.65	-0.8
4,930,621	+		GFF4938	0.65	-0.7
4,930,621	+		GFF4938	0.65	-0.0
4,930,621	+		GFF4938	0.65	-0.2
4,930,624	-		GFF4938	0.66	-0.6
4,930,629	-		GFF4938	0.66	-0.1
4,930,629	-		GFF4938	0.66	-1.4
4,930,629	-		GFF4938	0.66	-2.2
4,930,629	-		GFF4938	0.66	-1.2
4,930,629	-		GFF4938	0.66	-1.6
4,930,683	+		GFF4938	0.73	-0.1
4,930,694	+		GFF4938	0.75	-2.1
4,930,694	+		GFF4938	0.75	+0.1
4,930,702	-		GFF4938	0.76	-0.9
4,930,710	-		GFF4938	0.77	-1.7
4,930,710	-		GFF4938	0.77	-1.2
4,930,713	+		GFF4938	0.77	+1.2
4,930,713	+		GFF4938	0.77	+0.1
4,930,713	+		GFF4938	0.77	+0.8
4,930,713	-		GFF4938	0.77	-0.6
4,930,718	+		GFF4938	0.78	-0.2
4,930,726	-		GFF4938	0.79	-1.2
4,930,763	+		GFF4938	0.84	-0.1
4,930,782	-		GFF4938	0.86	+0.5
4,930,790	-		GFF4938	0.87	+0.4
4,930,793	+		GFF4938	0.87	-0.8
4,930,806	-		GFF4938	0.89	-0.9
4,930,810	-		GFF4938	0.90	-0.6
4,930,823	-				+0.3
4,930,837	-				-2.3
4,930,857	+				-0.7
4,930,865	-				+0.2
4,930,870	-				-0.7
4,930,870	-				-1.9
4,930,875	+				-2.2
4,930,875	+				-2.0
4,930,875	+				-0.5
4,930,875	+				+0.1
4,930,875	+				+0.3
4,930,875	+				+1.0
4,930,875	+				-2.5
4,930,875	+				-0.4
4,930,875	+				-1.7
4,930,875	+				-0.4
4,930,875	+				-1.7
4,930,878	-				-1.6
4,930,880	+				+0.3
4,930,883	-				-1.0
4,930,883	-				+0.5
4,930,883	-				-1.3
4,930,883	-				-1.8
4,930,883	-				-0.7
4,930,883	-				-0.9
4,930,883	-				-2.2
4,930,886	-				+0.5
4,930,891	+				-0.8
4,930,893	-				-0.5
4,930,893	-				-1.7
4,930,899	-				+0.3
4,930,919	+		GFF4939	0.20	-1.1
4,930,920	+		GFF4939	0.21	-0.4
4,930,920	+		GFF4939	0.21	-1.6
4,930,921	+		GFF4939	0.21	-0.5
4,930,928	-		GFF4939	0.26	-0.9
4,930,928	-		GFF4939	0.26	-2.7
4,930,929	-		GFF4939	0.26	+0.4
4,930,939	+		GFF4939	0.33	+0.1
4,930,962	+		GFF4939	0.47	-1.0
4,930,967	+		GFF4939	0.51	+0.1
4,930,967	+		GFF4939	0.51	-1.6
4,930,967	+		GFF4939	0.51	-0.7
4,930,967	+		GFF4939	0.51	+0.5
4,930,967	+		GFF4939	0.51	-0.6
4,930,967	+		GFF4939	0.51	-0.2
4,930,967	+		GFF4939	0.51	-0.8
4,930,967	+		GFF4939	0.51	-1.5
4,930,975	-		GFF4939	0.56	-1.7
4,930,975	-		GFF4939	0.56	-0.2
4,930,999	+		GFF4939	0.71	-0.8
4,931,005	-		GFF4939	0.75	-0.2
4,931,007	-		GFF4939	0.76	+0.3
4,931,016	+		GFF4939	0.82	-0.2
4,931,026	+		GFF4939	0.88	-0.8
4,931,026	+		GFF4939	0.88	-0.5
4,931,036	+				-0.7
4,931,036	-				-0.4
4,931,051	-				-1.3
4,931,070	-				+0.4
4,931,073	+				-0.4
4,931,073	+				+0.4
4,931,107	+		GFF4940	0.22	-0.5
4,931,107	+		GFF4940	0.22	-2.4
4,931,107	+		GFF4940	0.22	-2.3
4,931,107	+		GFF4940	0.22	+0.7
4,931,107	+		GFF4940	0.22	-0.7
4,931,107	+		GFF4940	0.22	-2.1
4,931,107	+		GFF4940	0.22	+1.2
4,931,107	+		GFF4940	0.22	-1.7
4,931,107	+		GFF4940	0.22	-2.1
4,931,110	-		GFF4940	0.24	-0.1
4,931,110	-		GFF4940	0.24	-0.0
4,931,112	+		GFF4940	0.25	-0.5
4,931,115	-		GFF4940	0.28	-1.6
4,931,115	-		GFF4940	0.28	-0.1
4,931,115	-		GFF4940	0.28	-1.6
4,931,115	-		GFF4940	0.28	-0.4
4,931,115	-		GFF4940	0.28	-0.5
4,931,115	-		GFF4940	0.28	-2.8
4,931,115	-		GFF4940	0.28	-2.1
4,931,115	-		GFF4940	0.28	-0.6
4,931,115	-		GFF4940	0.28	+0.5
4,931,115	-		GFF4940	0.28	-2.5
4,931,115	-		GFF4940	0.28	-0.8
4,931,115	-		GFF4940	0.28	+0.2
4,931,115	-		GFF4940	0.28	+0.5
4,931,120	-		GFF4940	0.31	-2.4
4,931,122	+		GFF4940	0.33	-1.6
4,931,125	-		GFF4940	0.35	-0.5
4,931,132	-		GFF4940	0.40	-0.4
4,931,199	-		GFF4940	0.88	-0.9
4,931,409	+				-0.6
4,931,418	-				-0.3
4,931,428	-				-0.5
4,931,461	-				-1.0
4,931,461	-				-0.1
4,931,461	-				-2.1
4,931,497	+				-0.9
4,931,519	-				-1.1
4,931,542	-		GFF4941	0.10	-1.5
4,931,542	-		GFF4941	0.10	+0.0
4,931,620	+		GFF4941	0.18	+0.9
4,931,625	+		GFF4941	0.19	-0.5
4,931,630	+		GFF4941	0.19	+1.3
4,931,638	-		GFF4941	0.20	-1.1
4,931,638	-		GFF4941	0.20	+0.2
4,931,657	-		GFF4941	0.22	-1.9
4,931,677	+		GFF4941	0.24	+0.9
4,931,677	+		GFF4941	0.24	-1.6
4,931,685	-		GFF4941	0.25	+0.2
4,931,685	-		GFF4941	0.25	-0.6
4,931,685	-		GFF4941	0.25	-0.1
4,931,721	-		GFF4941	0.28	+0.9
4,931,755	-		GFF4941	0.32	-0.5
4,931,805	-		GFF4941	0.37	+0.1
4,931,812	+		GFF4941	0.37	+0.3
4,931,814	+		GFF4941	0.37	-1.0
4,931,884	+		GFF4941	0.44	-1.8
4,931,884	+		GFF4941	0.44	-1.7
4,931,885	-		GFF4941	0.45	-1.7
4,931,892	-		GFF4941	0.45	-0.6
4,931,899	+		GFF4941	0.46	-0.1
4,931,901	+		GFF4941	0.46	-0.0
4,931,903	+		GFF4941	0.46	-0.7
4,931,907	-		GFF4941	0.47	-1.0
4,931,907	-		GFF4941	0.47	-1.0
4,931,910	+		GFF4941	0.47	-1.1
4,931,910	+		GFF4941	0.47	-2.2
4,931,918	-		GFF4941	0.48	+0.0
4,931,918	-		GFF4941	0.48	-0.3
4,931,921	+		GFF4941	0.48	-1.6
4,931,962	+		GFF4941	0.52	-0.2
4,931,962	+		GFF4941	0.52	-0.4
4,931,962	+		GFF4941	0.52	-1.4
4,931,970	-		GFF4941	0.53	-1.0
4,931,985	+		GFF4941	0.54	-3.4
4,931,998	+		GFF4941	0.56	-0.0
4,932,023	-		GFF4941	0.58	-1.4
4,932,123	+		GFF4941	0.68	-0.7
4,932,123	+		GFF4941	0.68	-1.4
4,932,128	+		GFF4941	0.69	-0.6
4,932,128	+		GFF4941	0.69	-0.7
4,932,132	-		GFF4941	0.69	-0.3
4,932,148	+		GFF4941	0.71	-1.7
4,932,162	-		GFF4941	0.72	-0.3
4,932,182	+		GFF4941	0.74	-0.6
4,932,192	+		GFF4941	0.75	+0.0
4,932,192	-		GFF4941	0.75	+0.6
4,932,192	-		GFF4941	0.75	-1.1
4,932,210	-		GFF4941	0.77	+0.0
4,932,210	-		GFF4941	0.77	-1.9
4,932,256	+		GFF4941	0.82	+0.5
4,932,272	+		GFF4941	0.83	+0.4
4,932,273	+		GFF4941	0.83	-0.1
4,932,281	-		GFF4941	0.84	+0.7
4,932,282	-		GFF4941	0.84	-0.6
4,932,296	+		GFF4941	0.86	-0.5
4,932,296	+		GFF4941	0.86	-0.4
4,932,296	+		GFF4941	0.86	+0.4
4,932,304	-		GFF4941	0.86	-1.6
4,932,304	-		GFF4941	0.86	+0.4
4,932,308	+		GFF4941	0.87	-2.3
4,932,332	+		GFF4941	0.89	+0.6
4,932,353	+				-3.5
4,932,353	+				-1.4
4,932,359	-				-0.9
4,932,359	-				+0.1
4,932,366	+				+0.9
4,932,367	-				+0.3
4,932,374	-				-2.0
4,932,374	-				-1.7
4,932,381	+				-0.1
4,932,385	+				+0.9
4,932,385	+				-0.5
4,932,385	+				+0.5
4,932,385	+				-0.3
4,932,385	+				-0.5
4,932,385	+				-0.5
4,932,385	+				-0.3
4,932,391	-				+0.7
4,932,393	-				-2.3
4,932,393	-				-2.4
4,932,393	-				-0.8
4,932,393	-				-0.8
4,932,393	-				+1.1
4,932,393	-				-0.5
4,932,393	-				+0.5
4,932,393	-				-1.6
4,932,401	+				+1.0
4,932,401	+				-1.7
4,932,433	-				-2.0
4,932,449	+				-1.1
4,932,451	+				-1.5
4,932,457	-				+0.7
4,932,459	+				-0.7
4,932,459	+				-0.7
4,932,462	-				-0.3
4,932,468	-				-0.9
4,932,547	+				+0.1
4,932,549	+				-0.6
4,932,549	+				-0.7
4,932,549	+				-0.1
4,932,552	+				-0.6
4,932,555	-				-1.8
4,932,555	-				-0.0
4,932,557	-				+0.3
4,932,557	-				-0.5
4,932,559	+				-1.6
4,932,571	+				-1.0
4,932,572	+				-0.7
4,932,579	-				-0.5
4,932,579	-				-1.2
4,932,579	-				-1.5
4,932,579	-				+0.5
4,932,580	+				+0.2
4,932,582	+				-0.1
4,932,582	+				-1.8
4,932,585	+				-0.6
4,932,590	-				+0.6
4,932,590	-				-1.2
4,932,590	-				+0.7
4,932,590	-				+0.7
4,932,600	-				+1.2
4,932,617	+				-0.3
4,932,617	+				+0.5
4,932,617	+				+0.6
4,932,617	+				-0.7
4,932,625	-				-0.2
4,932,625	-				-0.3
4,932,638	-				-2.0
4,932,706	+				-1.5
4,932,711	+				-0.3
4,932,712	+				-1.0
4,932,733	+		GFF4942	0.13	-0.6
4,932,739	-		GFF4942	0.13	-1.9
4,932,741	-		GFF4942	0.14	-1.4
4,932,775	+		GFF4942	0.18	+0.2
4,932,816	-		GFF4942	0.23	+0.0
4,932,849	+		GFF4942	0.28	-0.6
4,932,851	-		GFF4942	0.28	-0.3
4,932,876	+		GFF4942	0.31	-1.5
4,932,900	+		GFF4942	0.34	-0.1
4,932,913	-		GFF4942	0.36	-0.3
4,932,939	-		GFF4942	0.39	-0.6
4,932,960	-		GFF4942	0.42	-0.8
4,932,967	-		GFF4942	0.43	-1.7
4,932,996	-		GFF4942	0.46	+0.7
4,933,005	-		GFF4942	0.48	-0.9
4,933,014	+		GFF4942	0.49	-0.2
4,933,016	+		GFF4942	0.49	-0.8
4,933,023	+		GFF4942	0.50	-2.0
4,933,042	-		GFF4942	0.52	-1.7
4,933,063	+		GFF4942	0.55	-0.1
4,933,063	+		GFF4942	0.55	+0.2
4,933,077	+		GFF4942	0.57	-0.6
4,933,085	-		GFF4942	0.58	+0.4
4,933,093	-		GFF4942	0.59	-0.4
4,933,151	+		GFF4942	0.66	-0.6
4,933,161	+		GFF4942	0.68	-0.5
4,933,161	+		GFF4942	0.68	-1.0
4,933,259	-		GFF4942	0.80	-1.4
4,933,269	-		GFF4942	0.82	+0.5
4,933,279	+		GFF4942	0.83	+0.5
4,933,280	+		GFF4942	0.83	+0.4
4,933,286	+		GFF4942	0.84	-0.5
4,933,288	-		GFF4942	0.84	-0.1
4,933,334	-				-0.5
4,933,383	+				+0.5
4,933,398	-				-1.4
4,933,404	+				-2.1
4,933,414	+				-1.1
4,933,431	-				+0.3