Strain Fitness in Sphingobium sp. HT1-2 around GFF4937

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,928,277	+		GFF4936	0.36	+1.4
4,928,280	-		GFF4936	0.36	-0.6
4,928,292	-		GFF4936	0.37	-0.0
4,928,294	+		GFF4936	0.37	-0.4
4,928,302	-		GFF4936	0.38	-0.4
4,928,307	-		GFF4936	0.38	-0.4
4,928,325	-		GFF4936	0.39	-2.1
4,928,330	-		GFF4936	0.39	+0.1
4,928,330	-		GFF4936	0.39	+0.7
4,928,340	+		GFF4936	0.40	-1.5
4,928,345	+		GFF4936	0.40	-0.5
4,928,345	+		GFF4936	0.40	-0.4
4,928,345	+		GFF4936	0.40	-1.4
4,928,345	+		GFF4936	0.40	+0.4
4,928,345	+		GFF4936	0.40	+0.6
4,928,345	+		GFF4936	0.40	-0.8
4,928,345	+		GFF4936	0.40	-0.7
4,928,345	+		GFF4936	0.40	+0.2
4,928,345	+		GFF4936	0.40	+0.4
4,928,348	-		GFF4936	0.41	-1.9
4,928,348	-		GFF4936	0.41	-0.6
4,928,350	+		GFF4936	0.41	+0.4
4,928,350	+		GFF4936	0.41	-1.5
4,928,350	+		GFF4936	0.41	-1.1
4,928,350	+		GFF4936	0.41	+0.2
4,928,350	+		GFF4936	0.41	-0.8
4,928,350	+		GFF4936	0.41	-1.2
4,928,350	+		GFF4936	0.41	-0.0
4,928,350	+		GFF4936	0.41	-0.7
4,928,350	+		GFF4936	0.41	-1.9
4,928,350	+		GFF4936	0.41	-1.8
4,928,350	+		GFF4936	0.41	-3.0
4,928,350	+		GFF4936	0.41	-0.2
4,928,350	+		GFF4936	0.41	-1.1
4,928,350	+		GFF4936	0.41	+0.9
4,928,350	+		GFF4936	0.41	+0.8
4,928,350	+		GFF4936	0.41	-2.5
4,928,350	+		GFF4936	0.41	+0.3
4,928,350	+		GFF4936	0.41	-2.3
4,928,353	-		GFF4936	0.41	-1.0
4,928,353	-		GFF4936	0.41	-2.6
4,928,353	-		GFF4936	0.41	-1.7
4,928,353	-		GFF4936	0.41	-1.7
4,928,353	-		GFF4936	0.41	+0.4
4,928,353	-		GFF4936	0.41	+0.8
4,928,353	-		GFF4936	0.41	+1.4
4,928,353	-		GFF4936	0.41	-2.5
4,928,353	-		GFF4936	0.41	+0.3
4,928,358	-		GFF4936	0.41	+0.1
4,928,358	-		GFF4936	0.41	+0.1
4,928,358	-		GFF4936	0.41	-0.2
4,928,358	-		GFF4936	0.41	+0.2
4,928,358	-		GFF4936	0.41	-1.1
4,928,358	-		GFF4936	0.41	-2.2
4,928,358	-		GFF4936	0.41	-0.2
4,928,358	-		GFF4936	0.41	+0.1
4,928,358	-		GFF4936	0.41	-1.1
4,928,358	-		GFF4936	0.41	-1.4
4,928,358	-		GFF4936	0.41	-0.2
4,928,358	-		GFF4936	0.41	-0.1
4,928,358	-		GFF4936	0.41	-1.4
4,928,358	-		GFF4936	0.41	-0.7
4,928,358	-		GFF4936	0.41	-0.0
4,928,358	-		GFF4936	0.41	-1.0
4,928,358	-		GFF4936	0.41	-1.0
4,928,358	-		GFF4936	0.41	-0.2
4,928,358	-		GFF4936	0.41	-2.1
4,928,377	+		GFF4936	0.43	-1.3
4,928,377	+		GFF4936	0.43	+0.8
4,928,377	+		GFF4936	0.43	+0.3
4,928,377	+		GFF4936	0.43	-0.3
4,928,377	+		GFF4936	0.43	-2.1
4,928,385	-		GFF4936	0.43	+0.0
4,928,385	-		GFF4936	0.43	-0.2
4,928,385	-		GFF4936	0.43	+0.0
4,928,385	-		GFF4936	0.43	-0.7
4,928,385	-		GFF4936	0.43	-0.6
4,928,386	-		GFF4936	0.43	-0.6
4,928,390	-		GFF4936	0.44	-0.1
4,928,391	-		GFF4936	0.44	-0.9
4,928,399	+		GFF4936	0.44	-0.5
4,928,417	+		GFF4936	0.45	-0.2
4,928,445	+		GFF4936	0.47	-0.4
4,928,445	+		GFF4936	0.47	-0.8
4,928,453	-		GFF4936	0.48	-0.9
4,928,453	-		GFF4936	0.48	-1.1
4,928,453	-		GFF4936	0.48	-0.3
4,928,453	-		GFF4936	0.48	-1.9
4,928,453	-		GFF4936	0.48	-0.8
4,928,453	-		GFF4936	0.48	-0.2
4,928,453	-		GFF4936	0.48	+0.7
4,928,453	-		GFF4936	0.48	-1.4
4,928,481	+		GFF4936	0.50	-1.2
4,928,481	+		GFF4936	0.50	-2.7
4,928,481	+		GFF4936	0.50	-2.5
4,928,487	-		GFF4936	0.50	-1.6
4,928,489	-		GFF4936	0.50	-3.2
4,928,489	-		GFF4936	0.50	-0.4
4,928,489	-		GFF4936	0.50	-1.1
4,928,489	-		GFF4936	0.50	-2.8
4,928,489	-		GFF4936	0.50	-0.1
4,928,489	-		GFF4936	0.50	-0.9
4,928,489	-		GFF4936	0.50	+0.2
4,928,548	+		GFF4936	0.54	-0.9
4,928,558	+		GFF4936	0.55	-0.1
4,928,568	+		GFF4936	0.56	-1.0
4,928,576	-		GFF4936	0.56	-0.1
4,928,576	-		GFF4936	0.56	-0.7
4,928,576	-		GFF4936	0.56	-2.2
4,928,587	-		GFF4936	0.57	-3.2
4,928,599	-		GFF4936	0.58	+0.8
4,928,652	+		GFF4936	0.61	+0.1
4,928,672	+		GFF4936	0.63	-1.1
4,928,672	+		GFF4936	0.63	-0.5
4,928,672	+		GFF4936	0.63	-0.7
4,928,679	+		GFF4936	0.63	+0.7
4,928,680	-		GFF4936	0.63	-0.5
4,928,680	-		GFF4936	0.63	-2.1
4,928,680	-		GFF4936	0.63	-3.2
4,928,685	+		GFF4936	0.64	+0.1
4,928,685	+		GFF4936	0.64	-0.5
4,928,687	+		GFF4936	0.64	+0.6
4,928,687	-		GFF4936	0.64	-1.7
4,928,701	+		GFF4936	0.65	+0.4
4,928,708	+		GFF4936	0.65	+1.3
4,928,708	+		GFF4936	0.65	-1.4
4,928,708	+		GFF4936	0.65	+0.7
4,928,708	+		GFF4936	0.65	-0.5
4,928,709	+		GFF4936	0.65	+0.3
4,928,715	-		GFF4936	0.66	-2.4
4,928,716	-		GFF4936	0.66	-0.8
4,928,716	-		GFF4936	0.66	-0.6
4,928,724	+		GFF4936	0.66	-1.8
4,928,724	+		GFF4936	0.66	-0.6
4,928,742	-		GFF4936	0.67	-1.6
4,928,744	-		GFF4936	0.68	-0.2
4,928,778	+		GFF4936	0.70	-1.0
4,928,781	-		GFF4936	0.70	-0.4
4,928,789	+		GFF4936	0.71	-0.1
4,928,797	-		GFF4936	0.71	-1.6
4,928,799	+		GFF4936	0.71	-2.8
4,928,809	+		GFF4936	0.72	-2.1
4,928,809	+		GFF4936	0.72	-1.4
4,928,809	+		GFF4936	0.72	-1.1
4,928,809	+		GFF4936	0.72	-1.4
4,928,809	+		GFF4936	0.72	-0.7
4,928,814	+		GFF4936	0.72	-0.5
4,928,817	-		GFF4936	0.73	+0.7
4,928,817	-		GFF4936	0.73	-0.3
4,928,828	+		GFF4936	0.73	+0.4
4,928,852	-		GFF4936	0.75	-2.0
4,928,896	+		GFF4936	0.78	-0.2
4,928,896	+		GFF4936	0.78	-0.8
4,928,904	+		GFF4936	0.79	-2.0
4,928,904	-		GFF4936	0.79	-0.6
4,928,912	-		GFF4936	0.79	+0.9
4,928,912	-		GFF4936	0.79	-0.2
4,928,912	-		GFF4936	0.79	-0.1
4,928,947	+		GFF4936	0.81	+0.3
4,928,955	-		GFF4936	0.82	-1.5
4,928,975	+		GFF4936	0.83	-0.4
4,928,975	+		GFF4936	0.83	-2.8
4,928,975	+		GFF4936	0.83	-2.9
4,928,975	+		GFF4936	0.83	-0.6
4,928,983	-		GFF4936	0.84	-0.8
4,928,983	-		GFF4936	0.84	-0.3
4,929,018	+		GFF4936	0.86	-0.1
4,929,018	+		GFF4936	0.86	+1.0
4,929,026	-		GFF4936	0.87	-1.3
4,929,026	-		GFF4936	0.87	+0.1
4,929,110	+				-0.8
4,929,118	-				+0.3
4,929,118	-				-0.7
4,929,128	+				-1.3
4,929,139	+				-0.0
4,929,142	-				-0.5
4,929,144	+				-1.2
4,929,152	+				-0.4
4,929,152	-				+0.2
4,929,152	-				-0.0
4,929,152	-				-1.7
4,929,162	+				-0.0
4,929,162	+				-1.7
4,929,162	+				-0.1
4,929,162	+				-0.1
4,929,162	+				-0.7
4,929,162	+				-0.2
4,929,167	+				-0.2
4,929,170	-				+0.5
4,929,170	-				-0.2
4,929,170	-				-1.5
4,929,170	-				+0.4
4,929,170	-				+0.7
4,929,170	-				-2.1
4,929,170	-				+0.7
4,929,172	+				+1.2
4,929,172	+				-1.6
4,929,175	-				-0.6
4,929,180	-				-1.5
4,929,184	+				+0.0
4,929,188	+				-0.8
4,929,193	+				+0.4
4,929,196	-				-0.0
4,929,196	-				-1.7
4,929,196	-				-0.5
4,929,196	-				-0.5
4,929,218	-				-1.4
4,929,240	+				-0.9
4,929,259	-				-1.6
4,929,264	-				-1.0
4,929,285	+				-0.8
4,929,285	+				+0.6
4,929,293	-				+0.3
4,929,297	-				-1.7
4,929,304	+				-1.9
4,929,307	+				-0.8
4,929,307	+				-2.3
4,929,315	-				+0.8
4,929,325	+				+0.5
4,929,325	+				-2.6
4,929,325	+				-0.5
4,929,331	-				-1.9
4,929,333	-				-0.6
4,929,335	+				-0.6
4,929,335	+				+0.2
4,929,335	+				-1.9
4,929,381	+		GFF4937	0.15	-1.2
4,929,387	+		GFF4937	0.16	-0.9
4,929,387	+		GFF4937	0.16	-0.0
4,929,387	+		GFF4937	0.16	-1.2
4,929,387	+		GFF4937	0.16	+0.6
4,929,387	+		GFF4937	0.16	-0.2
4,929,387	+		GFF4937	0.16	-0.5
4,929,387	+		GFF4937	0.16	-0.1
4,929,387	+		GFF4937	0.16	+0.5
4,929,387	+		GFF4937	0.16	-0.4
4,929,387	+		GFF4937	0.16	+0.2
4,929,387	+		GFF4937	0.16	-0.6
4,929,387	+		GFF4937	0.16	-0.2
4,929,387	+		GFF4937	0.16	+0.2
4,929,387	-		GFF4937	0.16	+0.3
4,929,395	-		GFF4937	0.17	-2.3
4,929,395	-		GFF4937	0.17	-1.1
4,929,395	-		GFF4937	0.17	-0.3
4,929,395	-		GFF4937	0.17	+0.2
4,929,395	-		GFF4937	0.17	-0.6
4,929,395	-		GFF4937	0.17	-0.0
4,929,395	-		GFF4937	0.17	-2.7
4,929,395	-		GFF4937	0.17	-1.9
4,929,395	-		GFF4937	0.17	-0.3
4,929,395	-		GFF4937	0.17	-1.8
4,929,395	-		GFF4937	0.17	-2.1
4,929,395	-		GFF4937	0.17	+0.2
4,929,395	-		GFF4937	0.17	+0.9
4,929,395	-		GFF4937	0.17	+0.2
4,929,395	-		GFF4937	0.17	+0.4
4,929,395	-		GFF4937	0.17	-2.0
4,929,395	-		GFF4937	0.17	-0.8
4,929,395	-		GFF4937	0.17	-1.0
4,929,395	-		GFF4937	0.17	-1.2
4,929,395	-		GFF4937	0.17	-0.8
4,929,395	-		GFF4937	0.17	-0.1
4,929,422	-		GFF4937	0.20	-1.9
4,929,455	+		GFF4937	0.25	-1.0
4,929,455	+		GFF4937	0.25	-0.1
4,929,459	-		GFF4937	0.25	-0.5
4,929,461	+		GFF4937	0.26	-0.6
4,929,463	-		GFF4937	0.26	-1.8
4,929,480	-		GFF4937	0.28	+0.0
4,929,487	+		GFF4937	0.29	-0.9
4,929,506	+		GFF4937	0.32	+0.4
4,929,507	-		GFF4937	0.32	+0.2
4,929,514	-		GFF4937	0.33	+0.9
4,929,538	-		GFF4937	0.36	-0.1
4,929,554	-		GFF4937	0.38	-1.1
4,929,554	-		GFF4937	0.38	-2.1
4,929,574	+		GFF4937	0.41	-0.9
4,929,577	-		GFF4937	0.41	-1.2
4,929,668	+		GFF4937	0.54	-0.8
4,929,672	+		GFF4937	0.54	-3.5
4,929,676	-		GFF4937	0.55	-2.2
4,929,687	+		GFF4937	0.56	-1.3
4,929,699	-		GFF4937	0.58	+0.0
4,929,704	+		GFF4937	0.59	-2.9
4,929,704	+		GFF4937	0.59	-0.1
4,929,704	+		GFF4937	0.59	-0.3
4,929,726	+		GFF4937	0.62	-1.2
4,929,726	+		GFF4937	0.62	-1.6
4,929,733	-		GFF4937	0.63	-0.2
4,929,733	-		GFF4937	0.63	+0.2
4,929,734	-		GFF4937	0.63	-0.8
4,929,735	+		GFF4937	0.63	+0.5
4,929,736	+		GFF4937	0.63	-1.9
4,929,736	+		GFF4937	0.63	-3.6
4,929,736	+		GFF4937	0.63	+1.2
4,929,736	+		GFF4937	0.63	-1.4
4,929,736	+		GFF4937	0.63	+0.8
4,929,743	+		GFF4937	0.64	-0.4
4,929,743	-		GFF4937	0.64	+0.5
4,929,744	-		GFF4937	0.64	-2.6
4,929,744	-		GFF4937	0.64	-0.3
4,929,744	-		GFF4937	0.64	-1.1
4,929,744	-		GFF4937	0.64	-1.7
4,929,744	-		GFF4937	0.64	-0.6
4,929,744	-		GFF4937	0.64	-0.2
4,929,744	-		GFF4937	0.64	+0.4
4,929,744	-		GFF4937	0.64	+1.7
4,929,744	-		GFF4937	0.64	-0.0
4,929,744	-		GFF4937	0.64	+0.1
4,929,751	-		GFF4937	0.65	-1.8
4,929,769	-		GFF4937	0.67	-1.1
4,929,782	-		GFF4937	0.69	-0.9
4,929,785	+		GFF4937	0.70	-0.6
4,929,793	-		GFF4937	0.71	-1.9
4,929,803	-		GFF4937	0.72	-0.6
4,929,840	+		GFF4937	0.77	-1.8
4,929,873	+		GFF4937	0.82	+0.1
4,929,873	+		GFF4937	0.82	-1.3
4,929,881	-		GFF4937	0.83	+0.3
4,929,881	-		GFF4937	0.83	+0.8
4,929,893	+		GFF4937	0.84	-0.1
4,929,893	+		GFF4937	0.84	-2.8
4,929,893	+		GFF4937	0.84	-2.0
4,929,894	-		GFF4937	0.84	-0.0
4,929,895	-		GFF4937	0.85	-0.8
4,929,897	+		GFF4937	0.85	-0.8
4,929,901	-		GFF4937	0.85	-0.3
4,929,901	-		GFF4937	0.85	+0.4
4,929,901	-		GFF4937	0.85	-1.9
4,929,901	-		GFF4937	0.85	-0.8
4,929,903	+		GFF4937	0.86	+0.1
4,929,905	+		GFF4937	0.86	-0.6
4,929,905	-		GFF4937	0.86	-1.4
4,929,911	-		GFF4937	0.87	-0.9
4,929,911	-		GFF4937	0.87	-1.5
4,929,911	-		GFF4937	0.87	-0.2
4,929,913	-		GFF4937	0.87	-0.0
4,929,913	-		GFF4937	0.87	-2.4
4,929,918	-		GFF4937	0.88	+0.4
4,929,964	+				-0.2
4,929,972	-				+0.4
4,929,998	+				-1.3
4,929,998	+				-0.3
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4,929,998	+				+0.1
4,930,006	-				-1.6
4,930,008	+				-1.8
4,930,008	+				+0.1
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4,930,008	+				-1.0
4,930,016	-				-1.4
4,930,016	-				-1.4
4,930,016	-				-0.4
4,930,016	-				+0.4
4,930,016	-				-0.8
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4,930,032	+				+0.5
4,930,045	-				-0.6
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4,930,077	+				+0.3
4,930,077	+				+0.4
4,930,085	-				-2.1
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4,930,191	+		GFF4938	0.10	-1.0
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4,930,455	+		GFF4938	0.44	-1.2
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4,930,456	+		GFF4938	0.44	-1.9
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4,930,527	-		GFF4938	0.53	-2.1
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4,930,539	+		GFF4938	0.55	+0.3
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4,930,578	+		GFF4938	0.60	-2.1
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4,930,592	-		GFF4938	0.62	+0.1
4,930,600	-		GFF4938	0.63	-0.7
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4,930,611	-		GFF4938	0.64	-2.0
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4,930,629	-		GFF4938	0.66	-2.2
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4,930,683	+		GFF4938	0.73	-0.1
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4,930,718	+		GFF4938	0.78	-0.2
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4,930,763	+		GFF4938	0.84	-0.1
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4,930,790	-		GFF4938	0.87	+0.4
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4,930,810	-		GFF4938	0.90	-0.6
4,930,823	-				+0.3
4,930,837	-				-2.3
4,930,857	+				-0.7
4,930,865	-				+0.2
4,930,870	-				-0.7
4,930,870	-				-1.9
4,930,875	+				-2.2
4,930,875	+				-2.0
4,930,875	+				-0.5
4,930,875	+				+0.1
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4,930,875	+				+1.0
4,930,875	+				-2.5
4,930,875	+				-0.4
4,930,875	+				-1.7
4,930,875	+				-0.4
4,930,875	+				-1.7
4,930,878	-				-1.6
4,930,880	+				+0.3
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4,930,883	-				+0.5
4,930,883	-				-1.3
4,930,883	-				-1.8
4,930,883	-				-0.7
4,930,883	-				-0.9
4,930,883	-				-2.2
4,930,886	-				+0.5
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4,930,893	-				-0.5
4,930,893	-				-1.7
4,930,899	-				+0.3
4,930,919	+		GFF4939	0.20	-1.1
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4,930,920	+		GFF4939	0.21	-1.6
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4,930,928	-		GFF4939	0.26	-0.9
4,930,928	-		GFF4939	0.26	-2.7
4,930,929	-		GFF4939	0.26	+0.4
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4,930,967	+		GFF4939	0.51	-1.5
4,930,975	-		GFF4939	0.56	-1.7
4,930,975	-		GFF4939	0.56	-0.2
4,930,999	+		GFF4939	0.71	-0.8
4,931,005	-		GFF4939	0.75	-0.2
4,931,007	-		GFF4939	0.76	+0.3