Strain Fitness in Sphingobium sp. HT1-2 around GFF4921

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,912,758	-		GFF4919	0.67	-1.2
4,912,760	-		GFF4919	0.67	-1.7
4,912,765	+		GFF4919	0.68	+0.1
4,912,773	-		GFF4919	0.70	-0.5
4,912,815	+		GFF4919	0.77	-0.6
4,912,830	+		GFF4919	0.80	-1.8
4,912,849	-		GFF4919	0.83	+0.4
4,912,855	+		GFF4919	0.84	+1.3
4,912,863	-		GFF4919	0.86	-1.5
4,912,874	-		GFF4919	0.88	-2.6
4,912,874	-		GFF4919	0.88	-1.7
4,912,881	+		GFF4919	0.89	-0.6
4,912,889	+				+0.2
4,912,889	+				+0.7
4,912,902	+				-2.0
4,912,944	+				+0.4
4,912,944	+				-1.8
4,912,945	+				-0.6
4,912,945	+				-0.3
4,912,945	+				+1.2
4,912,945	+				-0.3
4,912,945	+				-1.4
4,912,952	-				-0.5
4,912,952	-				+0.5
4,912,953	-				-0.0
4,912,953	-				+0.5
4,912,953	-				+0.1
4,912,953	-				-1.8
4,912,953	-				-1.0
4,912,953	-				+0.8
4,912,954	+				-0.4
4,912,962	-				-1.7
4,912,962	-				-0.9
4,912,963	+				-0.7
4,912,963	+				-0.4
4,912,963	+				+0.1
4,912,963	+				-0.5
4,912,963	+				+0.6
4,912,963	+				-0.3
4,912,963	+				-1.9
4,912,963	+				-1.9
4,912,965	+				-0.6
4,912,968	+				+0.2
4,912,970	+				-0.5
4,912,971	-				-0.8
4,912,971	-				+0.1
4,912,971	-				-1.8
4,912,971	-				+0.5
4,912,973	+				-0.1
4,912,973	-				-0.3
4,912,976	-				-2.2
4,912,976	-				+0.7
4,912,976	-				+0.1
4,912,996	-				-1.3
4,913,001	+				-1.7
4,913,009	-				-0.5
4,913,010	+				+0.3
4,913,010	+				+0.8
4,913,028	+				-0.4
4,913,036	-				+0.3
4,913,038	+				+0.1
4,913,039	-				-2.0
4,913,041	-				+0.4
4,913,045	+				-0.1
4,913,096	+				-0.8
4,913,104	-				-0.1
4,913,104	-				-0.9
4,913,119	+				-0.6
4,913,124	+		GFF4920	0.11	+1.7
4,913,126	-		GFF4920	0.11	+0.2
4,913,138	+		GFF4920	0.14	-0.1
4,913,146	-		GFF4920	0.15	-1.1
4,913,146	-		GFF4920	0.15	+0.4
4,913,153	+		GFF4920	0.17	+0.7
4,913,163	+		GFF4920	0.19	+0.7
4,913,171	-		GFF4920	0.20	-0.2
4,913,172	+		GFF4920	0.20	+0.3
4,913,172	+		GFF4920	0.20	+0.2
4,913,172	+		GFF4920	0.20	-1.1
4,913,172	+		GFF4920	0.20	-1.5
4,913,172	+		GFF4920	0.20	-0.9
4,913,180	-		GFF4920	0.22	-0.5
4,913,180	-		GFF4920	0.22	-0.4
4,913,224	+		GFF4920	0.30	-1.4
4,913,233	+		GFF4920	0.32	-1.2
4,913,234	+		GFF4920	0.32	-0.0
4,913,239	-		GFF4920	0.33	-0.3
4,913,265	+		GFF4920	0.38	+0.4
4,913,287	+		GFF4920	0.43	-0.5
4,913,296	+		GFF4920	0.44	-2.0
4,913,296	+		GFF4920	0.44	-0.9
4,913,296	+		GFF4920	0.44	-0.3
4,913,304	-		GFF4920	0.46	-2.4
4,913,304	-		GFF4920	0.46	-1.1
4,913,304	-		GFF4920	0.46	-2.0
4,913,328	+		GFF4920	0.51	-0.7
4,913,329	+		GFF4920	0.51	-0.7
4,913,334	+		GFF4920	0.52	+0.3
4,913,334	+		GFF4920	0.52	-0.7
4,913,335	+		GFF4920	0.52	-0.2
4,913,335	+		GFF4920	0.52	-0.7
4,913,335	+		GFF4920	0.52	-1.7
4,913,337	-		GFF4920	0.52	+0.4
4,913,342	-		GFF4920	0.53	+0.4
4,913,342	-		GFF4920	0.53	-0.0
4,913,342	-		GFF4920	0.53	-0.2
4,913,342	-		GFF4920	0.53	-0.1
4,913,342	-		GFF4920	0.53	+0.7
4,913,342	-		GFF4920	0.53	-0.3
4,913,343	-		GFF4920	0.54	-1.8
4,913,343	-		GFF4920	0.54	-0.7
4,913,375	-		GFF4920	0.60	+0.9
4,913,390	+		GFF4920	0.63	-1.0
4,913,391	+		GFF4920	0.63	-2.4
4,913,398	-		GFF4920	0.64	-0.5
4,913,399	-		GFF4920	0.65	+0.9
4,913,401	-		GFF4920	0.65	+0.8
4,913,401	-		GFF4920	0.65	-0.3
4,913,437	-		GFF4920	0.72	-0.4
4,913,447	+		GFF4920	0.74	-1.6
4,913,457	+		GFF4920	0.76	-1.7
4,913,473	-		GFF4920	0.79	-0.9
4,913,481	+		GFF4920	0.81	-0.6
4,913,487	+		GFF4920	0.82	-2.4
4,913,490	-		GFF4920	0.82	-1.0
4,913,500	-		GFF4920	0.84	-0.8
4,913,527	+		GFF4920	0.89	-1.9
4,913,534	+				-1.0
4,913,535	-				+0.6
4,913,535	-				-0.8
4,913,540	-				+0.6
4,913,542	-				+0.5
4,913,567	+				-1.7
4,913,573	+				+0.5
4,913,581	+				+0.1
4,913,609	+				-0.2
4,913,655	-				-0.7
4,913,679	+				+0.9
4,913,684	+				+0.6
4,913,684	+				-1.5
4,913,692	-				+0.1
4,913,705	+				+0.3
4,913,715	-				-2.5
4,913,720	+				-0.1
4,913,733	-				-2.6
4,913,740	-				-0.1
4,913,752	+				-1.3
4,913,752	+				+0.5
4,913,752	+				+0.2
4,913,752	+				+0.6
4,913,752	+				-1.6
4,913,752	+				-0.1
4,913,752	+				-2.1
4,913,754	-				-0.6
4,913,754	-				-0.5
4,913,760	-				-0.0
4,913,760	-				-0.3
4,913,775	+		GFF4921	0.11	-0.8
4,913,779	-		GFF4921	0.11	+1.1
4,913,792	+		GFF4921	0.13	-0.7
4,913,793	+		GFF4921	0.13	-0.1
4,913,798	+		GFF4921	0.13	-2.0
4,913,808	+		GFF4921	0.15	-2.0
4,913,836	-		GFF4921	0.18	-0.6
4,913,868	-		GFF4921	0.22	-1.6
4,913,870	+		GFF4921	0.22	+0.1
4,913,870	+		GFF4921	0.22	-1.7
4,913,873	-		GFF4921	0.23	-0.8
4,913,876	+		GFF4921	0.23	-0.8
4,913,884	-		GFF4921	0.24	+0.9
4,913,888	+		GFF4921	0.24	-0.0
4,913,888	+		GFF4921	0.24	-0.7
4,913,902	+		GFF4921	0.26	-1.7
4,913,910	-		GFF4921	0.27	+1.0
4,913,910	-		GFF4921	0.27	-1.2
4,913,911	-		GFF4921	0.27	+0.6
4,913,914	-		GFF4921	0.28	+0.2
4,913,917	-		GFF4921	0.28	-1.2
4,913,948	+		GFF4921	0.32	+1.6
4,914,014	+		GFF4921	0.40	+1.3
4,914,015	-		GFF4921	0.40	-0.1
4,914,032	+		GFF4921	0.42	-0.8
4,914,032	+		GFF4921	0.42	-1.9
4,914,037	+		GFF4921	0.43	-0.6
4,914,040	-		GFF4921	0.43	+0.6
4,914,040	-		GFF4921	0.43	-1.1
4,914,040	-		GFF4921	0.43	-1.6
4,914,065	+		GFF4921	0.46	-0.6
4,914,065	+		GFF4921	0.46	-0.1
4,914,065	+		GFF4921	0.46	+0.7
4,914,065	+		GFF4921	0.46	-1.3
4,914,065	+		GFF4921	0.46	-0.5
4,914,065	+		GFF4921	0.46	-0.1
4,914,065	+		GFF4921	0.46	-0.7
4,914,073	-		GFF4921	0.47	-1.2
4,914,073	-		GFF4921	0.47	+0.8
4,914,073	-		GFF4921	0.47	-0.3
4,914,073	-		GFF4921	0.47	+0.2
4,914,083	-		GFF4921	0.48	-0.8
4,914,117	-		GFF4921	0.52	-1.2
4,914,120	-		GFF4921	0.53	-1.3
4,914,120	-		GFF4921	0.53	-0.3
4,914,129	+		GFF4921	0.54	-0.2
4,914,129	+		GFF4921	0.54	-0.1
4,914,129	+		GFF4921	0.54	-0.3
4,914,129	+		GFF4921	0.54	-2.9
4,914,129	+		GFF4921	0.54	+0.2
4,914,129	+		GFF4921	0.54	-0.3
4,914,129	+		GFF4921	0.54	-0.7
4,914,136	+		GFF4921	0.55	-0.5
4,914,136	-		GFF4921	0.55	+0.3
4,914,137	-		GFF4921	0.55	-1.8
4,914,137	-		GFF4921	0.55	-0.5
4,914,137	-		GFF4921	0.55	-1.3
4,914,137	-		GFF4921	0.55	-0.6
4,914,137	-		GFF4921	0.55	-1.8
4,914,137	-		GFF4921	0.55	+0.1
4,914,142	+		GFF4921	0.55	-0.5
4,914,144	-		GFF4921	0.56	-0.9
4,914,152	+		GFF4921	0.57	+0.1
4,914,152	+		GFF4921	0.57	-1.5
4,914,153	-		GFF4921	0.57	+0.5
4,914,171	-		GFF4921	0.59	-0.7
4,914,218	-		GFF4921	0.65	-0.4
4,914,223	-		GFF4921	0.65	-0.3
4,914,223	-		GFF4921	0.65	-0.2
4,914,227	+		GFF4921	0.66	+0.3
4,914,227	+		GFF4921	0.66	+0.6
4,914,230	-		GFF4921	0.66	-0.5
4,914,230	-		GFF4921	0.66	-0.6
4,914,232	+		GFF4921	0.66	+0.7
4,914,232	+		GFF4921	0.66	-0.5
4,914,232	+		GFF4921	0.66	+0.8
4,914,235	-		GFF4921	0.67	-0.2
4,914,235	-		GFF4921	0.67	+0.3
4,914,235	-		GFF4921	0.67	-0.1
4,914,236	-		GFF4921	0.67	-1.2
4,914,237	+		GFF4921	0.67	-0.9
4,914,240	-		GFF4921	0.67	-1.7
4,914,240	-		GFF4921	0.67	-0.3
4,914,240	-		GFF4921	0.67	+0.2
4,914,254	+		GFF4921	0.69	+0.0
4,914,261	+		GFF4921	0.70	+0.3
4,914,261	+		GFF4921	0.70	-1.4
4,914,262	+		GFF4921	0.70	-1.9
4,914,283	+		GFF4921	0.73	-0.9
4,914,285	+		GFF4921	0.73	+0.1
4,914,291	-		GFF4921	0.74	+0.7
4,914,293	-		GFF4921	0.74	-0.5
4,914,298	+		GFF4921	0.74	-0.6
4,914,303	+		GFF4921	0.75	-0.6
4,914,303	+		GFF4921	0.75	-0.9
4,914,303	+		GFF4921	0.75	-0.3
4,914,303	+		GFF4921	0.75	-1.9
4,914,308	+		GFF4921	0.76	-2.9
4,914,308	+		GFF4921	0.76	-0.8
4,914,311	-		GFF4921	0.76	+0.2
4,914,311	-		GFF4921	0.76	-0.1
4,914,311	-		GFF4921	0.76	-0.3
4,914,311	-		GFF4921	0.76	-0.8
4,914,311	-		GFF4921	0.76	-3.0
4,914,311	-		GFF4921	0.76	-1.3
4,914,318	+		GFF4921	0.77	+0.7
4,914,320	+		GFF4921	0.77	-0.6
4,914,320	+		GFF4921	0.77	-1.3
4,914,321	-		GFF4921	0.77	+0.3
4,914,322	+		GFF4921	0.77	-0.6
4,914,322	+		GFF4921	0.77	-1.1
4,914,322	+		GFF4921	0.77	-0.0
4,914,322	+		GFF4921	0.77	-2.2
4,914,322	+		GFF4921	0.77	-1.0
4,914,326	-		GFF4921	0.78	+0.1
4,914,330	-		GFF4921	0.78	+0.7
4,914,330	-		GFF4921	0.78	-0.9
4,914,330	-		GFF4921	0.78	-0.7
4,914,366	+		GFF4921	0.83	-1.6
4,914,371	+		GFF4921	0.83	-3.4
4,914,377	+		GFF4921	0.84	-0.4
4,914,379	-		GFF4921	0.84	-1.8
4,914,398	-		GFF4921	0.87	-1.8
4,914,424	+		GFF4921	0.90	+0.3
4,914,427	-				+0.2
4,914,432	-				-2.0
4,914,432	-				-1.6
4,914,433	-				-0.2
4,914,464	-				+0.4
4,914,467	-				-0.8
4,914,489	+				-0.7
4,914,554	-				-1.9
4,914,554	-				-1.3
4,914,556	+				+0.6
4,914,556	+				+0.4
4,914,569	+				-1.2
4,914,571	+				+0.4
4,914,574	-				-0.5
4,914,576	+				-0.8
4,914,576	+				+0.6
4,914,576	+				-0.7
4,914,576	+				+0.6
4,914,576	+				-0.4
4,914,576	+				-1.7
4,914,577	-				-0.7
4,914,577	-				+0.3
4,914,579	-				-1.6
4,914,582	-				-1.3
4,914,584	-				-0.8
4,914,584	-				+0.2
4,914,584	-				-1.0
4,914,584	-				+0.2
4,914,584	-				-1.6
4,914,584	-				-2.7
4,914,595	+				+0.4
4,914,603	-				-0.6
4,914,603	-				-2.7
4,914,614	+				-0.5
4,914,626	-		GFF4922	0.11	-1.7
4,914,626	-		GFF4922	0.11	-0.8
4,914,626	-		GFF4922	0.11	+0.4
4,914,630	+		GFF4922	0.11	-1.3
4,914,649	+		GFF4922	0.14	-0.6
4,914,676	+		GFF4922	0.18	+0.1
4,914,683	+		GFF4922	0.18	-0.6
4,914,683	+		GFF4922	0.18	-0.2
4,914,683	-		GFF4922	0.18	+0.1
4,914,684	-		GFF4922	0.19	-0.1
4,914,691	-		GFF4922	0.20	+0.3
4,914,693	+		GFF4922	0.20	-0.4
4,914,701	-		GFF4922	0.21	-0.3
4,914,701	-		GFF4922	0.21	-2.1
4,914,720	+		GFF4922	0.23	-0.9
4,914,720	+		GFF4922	0.23	-0.9
4,914,720	+		GFF4922	0.23	-2.3
4,914,735	-		GFF4922	0.25	-2.2
4,914,735	-		GFF4922	0.25	-0.1
4,914,745	-		GFF4922	0.27	-0.2
4,914,745	-		GFF4922	0.27	-1.4
4,914,769	+		GFF4922	0.30	-0.4
4,914,777	-		GFF4922	0.31	+0.1
4,914,777	-		GFF4922	0.31	+0.5
4,914,780	+		GFF4922	0.31	-0.0
4,914,785	+		GFF4922	0.32	-0.7
4,914,786	+		GFF4922	0.32	-0.7
4,914,794	-		GFF4922	0.33	-0.0
4,914,794	-		GFF4922	0.33	+0.4
4,914,794	-		GFF4922	0.33	-0.6
4,914,796	+		GFF4922	0.33	-2.7
4,914,805	+		GFF4922	0.35	-1.6
4,914,829	-		GFF4922	0.38	-1.8
4,914,838	-		GFF4922	0.39	-1.1
4,914,870	-		GFF4922	0.43	-0.4
4,914,872	+		GFF4922	0.44	-1.8
4,914,877	+		GFF4922	0.44	-1.2
4,914,880	-		GFF4922	0.45	+0.1
4,914,881	+		GFF4922	0.45	-1.5
4,914,881	+		GFF4922	0.45	-0.6
4,914,881	+		GFF4922	0.45	-1.2
4,914,882	-		GFF4922	0.45	-1.3
4,914,889	-		GFF4922	0.46	-0.7
4,914,889	-		GFF4922	0.46	-0.0
4,914,896	+		GFF4922	0.47	-0.5
4,914,896	+		GFF4922	0.47	-1.3
4,914,896	+		GFF4922	0.47	-0.9
4,914,896	+		GFF4922	0.47	-1.9
4,914,896	+		GFF4922	0.47	-0.4
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