Strain Fitness in Sphingobium sp. HT1-2 around GFF4917

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,909,109	+		GFF4916	0.49	+1.6
4,909,111	+		GFF4916	0.49	-0.8
4,909,115	-		GFF4916	0.49	-0.7
4,909,119	-		GFF4916	0.49	-1.2
4,909,127	-		GFF4916	0.50	-1.7
4,909,127	-		GFF4916	0.50	-0.4
4,909,165	+		GFF4916	0.52	-1.7
4,909,186	+		GFF4916	0.53	-0.6
4,909,187	+		GFF4916	0.53	-1.0
4,909,195	-		GFF4916	0.53	+0.1
4,909,195	-		GFF4916	0.53	-1.7
4,909,197	+		GFF4916	0.53	-1.6
4,909,197	+		GFF4916	0.53	-1.1
4,909,197	+		GFF4916	0.53	+0.0
4,909,197	+		GFF4916	0.53	-2.7
4,909,205	-		GFF4916	0.54	-1.7
4,909,234	+		GFF4916	0.55	-1.2
4,909,247	+		GFF4916	0.56	-1.1
4,909,248	+		GFF4916	0.56	-0.8
4,909,250	-		GFF4916	0.56	-0.3
4,909,256	-		GFF4916	0.56	+0.9
4,909,285	-		GFF4916	0.58	+0.9
4,909,297	-		GFF4916	0.59	-2.4
4,909,308	-		GFF4916	0.59	-0.0
4,909,317	+		GFF4916	0.60	-1.5
4,909,317	+		GFF4916	0.60	-1.9
4,909,317	+		GFF4916	0.60	-1.8
4,909,325	+		GFF4916	0.60	-2.6
4,909,325	-		GFF4916	0.60	+0.0
4,909,325	-		GFF4916	0.60	-1.0
4,909,325	-		GFF4916	0.60	-1.6
4,909,325	-		GFF4916	0.60	-1.5
4,909,325	-		GFF4916	0.60	-1.8
4,909,333	-		GFF4916	0.60	-1.1
4,909,343	-		GFF4916	0.61	-2.2
4,909,349	+		GFF4916	0.61	-0.6
4,909,364	+		GFF4916	0.62	-1.3
4,909,364	+		GFF4916	0.62	-1.4
4,909,372	-		GFF4916	0.62	-1.7
4,909,403	-		GFF4916	0.64	-2.3
4,909,411	+		GFF4916	0.64	-0.5
4,909,411	-		GFF4916	0.64	-1.0
4,909,413	-		GFF4916	0.65	-2.6
4,909,439	+		GFF4916	0.66	-1.0
4,909,439	+		GFF4916	0.66	+0.6
4,909,439	+		GFF4916	0.66	-3.2
4,909,443	+		GFF4916	0.66	-2.6
4,909,447	-		GFF4916	0.66	+0.4
4,909,447	-		GFF4916	0.66	-1.1
4,909,447	-		GFF4916	0.66	-2.4
4,909,447	-		GFF4916	0.66	-1.2
4,909,447	-		GFF4916	0.66	-1.6
4,909,447	-		GFF4916	0.66	-0.1
4,909,449	+		GFF4916	0.66	-0.4
4,909,461	-		GFF4916	0.67	+0.4
4,909,483	+		GFF4916	0.68	+0.2
4,909,496	-		GFF4916	0.69	-1.9
4,909,496	-		GFF4916	0.69	-0.9
4,909,501	-		GFF4916	0.69	-1.8
4,909,505	+		GFF4916	0.69	-0.6
4,909,509	+		GFF4916	0.70	-0.8
4,909,511	-		GFF4916	0.70	-1.7
4,909,581	-		GFF4916	0.73	-2.1
4,909,600	+		GFF4916	0.74	-0.7
4,909,603	-		GFF4916	0.74	-1.7
4,909,657	-		GFF4916	0.77	-0.6
4,909,659	+		GFF4916	0.77	+0.7
4,909,665	+		GFF4916	0.78	-1.0
4,909,665	+		GFF4916	0.78	-2.7
4,909,673	-		GFF4916	0.78	-1.2
4,909,673	-		GFF4916	0.78	-2.2
4,909,673	-		GFF4916	0.78	-0.5
4,909,673	-		GFF4916	0.78	-0.6
4,909,686	-		GFF4916	0.79	-1.7
4,909,705	+		GFF4916	0.80	-1.1
4,909,705	+		GFF4916	0.80	+0.7
4,909,717	+		GFF4916	0.80	-0.7
4,909,717	+		GFF4916	0.80	+0.5
4,909,717	+		GFF4916	0.80	-1.9
4,909,717	+		GFF4916	0.80	-1.4
4,909,718	-		GFF4916	0.80	+0.1
4,909,725	-		GFF4916	0.81	-2.6
4,909,725	-		GFF4916	0.81	-1.1
4,909,725	-		GFF4916	0.81	-0.1
4,909,725	-		GFF4916	0.81	-3.4
4,909,725	-		GFF4916	0.81	-3.9
4,909,732	-		GFF4916	0.81	-0.6
4,909,732	-		GFF4916	0.81	-2.1
4,909,732	-		GFF4916	0.81	-0.7
4,909,736	-		GFF4916	0.81	-2.0
4,909,765	+		GFF4916	0.83	-1.7
4,909,794	+		GFF4916	0.84	-0.7
4,909,795	+		GFF4916	0.84	-2.8
4,909,803	-		GFF4916	0.85	-0.6
4,909,803	-		GFF4916	0.85	+1.2
4,909,804	+		GFF4916	0.85	-0.7
4,909,812	-		GFF4916	0.85	-2.2
4,909,812	-		GFF4916	0.85	-2.0
4,909,818	+		GFF4916	0.86	-0.8
4,909,818	+		GFF4916	0.86	-1.7
4,909,818	+		GFF4916	0.86	+0.4
4,909,818	+		GFF4916	0.86	-0.7
4,909,826	-		GFF4916	0.86	-0.8
4,909,827	+		GFF4916	0.86	-0.0
4,909,827	+		GFF4916	0.86	-0.6
4,909,827	+		GFF4916	0.86	-0.8
4,909,829	+		GFF4916	0.86	-0.2
4,909,835	-		GFF4916	0.86	-0.7
4,909,835	-		GFF4916	0.86	-0.4
4,909,835	-		GFF4916	0.86	-1.7
4,909,839	+		GFF4916	0.87	-2.0
4,909,847	-		GFF4916	0.87	-0.9
4,909,849	+		GFF4916	0.87	-0.8
4,909,849	+		GFF4916	0.87	-0.9
4,909,900	+		GFF4916	0.90	-0.7
4,909,908	-				-1.7
4,909,927	+				-2.0
4,909,936	+				-1.7
4,909,941	-				-0.1
4,909,946	-				-1.8
4,909,946	-				-1.2
4,909,959	-				+0.3
4,909,961	+				-1.7
4,909,969	-				-1.0
4,909,969	-				-0.5
4,909,971	-				-0.9
4,909,988	+				-0.2
4,909,991	+				+0.7
4,909,996	-				-0.1
4,909,997	-				-0.7
4,909,999	+				+0.1
4,910,012	-				-1.6
4,910,022	+				-0.7
4,910,022	+				-1.8
4,910,022	+				-1.2
4,910,022	+				+0.4
4,910,022	+				-2.4
4,910,022	+				-0.7
4,910,022	+				+1.0
4,910,022	+				-1.8
4,910,022	+				-0.4
4,910,022	+				+0.2
4,910,022	+				-0.7
4,910,022	+				-0.8
4,910,022	+				-0.7
4,910,023	-				-0.7
4,910,027	+				-1.8
4,910,030	-				-2.6
4,910,030	-				-0.3
4,910,030	-				-0.5
4,910,030	-				-0.6
4,910,030	-				-2.0
4,910,030	-				-0.2
4,910,030	-				+0.1
4,910,030	-				-2.6
4,910,030	-				+0.3
4,910,030	-				-1.9
4,910,030	-				-0.6
4,910,030	-				-2.1
4,910,030	-				-1.5
4,910,040	-				-0.9
4,910,079	-				+0.8
4,910,083	-				-2.1
4,910,083	-				+0.0
4,910,085	+				-0.7
4,910,085	+				-0.4
4,910,088	+				+0.4
4,910,096	-				+0.2
4,910,096	-				+0.6
4,910,103	+				-1.7
4,910,103	+				-1.5
4,910,103	+				-0.5
4,910,103	+				-0.3
4,910,111	-				-0.3
4,910,111	-				-0.7
4,910,111	-				-0.4
4,910,111	-				+0.1
4,910,111	-				-0.8
4,910,111	-				-2.5
4,910,111	-				+0.7
4,910,111	-				-0.4
4,910,158	+				-0.3
4,910,166	-				-0.7
4,910,173	+				+1.5
4,910,173	+				+0.6
4,910,173	+				-0.9
4,910,173	+				+0.4
4,910,173	+				-1.2
4,910,178	+				-0.5
4,910,178	+				-0.9
4,910,178	+				+0.5
4,910,178	+				-1.0
4,910,181	-		GFF4917	0.10	-0.0
4,910,181	-		GFF4917	0.10	-0.6
4,910,181	-		GFF4917	0.10	+0.7
4,910,181	-		GFF4917	0.10	-4.0
4,910,183	+		GFF4917	0.11	-1.5
4,910,183	+		GFF4917	0.11	-0.2
4,910,186	-		GFF4917	0.11	-0.4
4,910,186	-		GFF4917	0.11	+0.3
4,910,186	-		GFF4917	0.11	-0.7
4,910,186	-		GFF4917	0.11	-0.9
4,910,186	-		GFF4917	0.11	-0.6
4,910,186	-		GFF4917	0.11	-0.7
4,910,188	+		GFF4917	0.11	-1.9
4,910,188	+		GFF4917	0.11	-0.4
4,910,188	+		GFF4917	0.11	-1.2
4,910,191	-		GFF4917	0.12	-1.4
4,910,191	-		GFF4917	0.12	-1.7
4,910,191	-		GFF4917	0.12	-0.4
4,910,191	-		GFF4917	0.12	+1.1
4,910,191	-		GFF4917	0.12	+0.3
4,910,191	-		GFF4917	0.12	-0.6
4,910,191	-		GFF4917	0.12	-0.1
4,910,191	-		GFF4917	0.12	-1.1
4,910,191	-		GFF4917	0.12	+0.7
4,910,191	-		GFF4917	0.12	-0.9
4,910,196	-		GFF4917	0.12	-1.3
4,910,196	-		GFF4917	0.12	-0.5
4,910,199	-		GFF4917	0.13	-0.5
4,910,201	+		GFF4917	0.13	+0.2
4,910,204	-		GFF4917	0.13	-2.9
4,910,221	+		GFF4917	0.16	-0.7
4,910,229	-		GFF4917	0.17	+0.8
4,910,239	+		GFF4917	0.18	+1.2
4,910,239	+		GFF4917	0.18	-1.0
4,910,271	+		GFF4917	0.23	-2.0
4,910,271	+		GFF4917	0.23	-0.7
4,910,271	+		GFF4917	0.23	-0.7
4,910,275	-		GFF4917	0.23	-0.6
4,910,281	+		GFF4917	0.24	-0.2
4,910,286	-		GFF4917	0.25	-1.6
4,910,291	+		GFF4917	0.25	-0.4
4,910,299	-		GFF4917	0.26	+0.2
4,910,299	-		GFF4917	0.26	-1.2
4,910,300	-		GFF4917	0.27	-1.8
4,910,310	-		GFF4917	0.28	-1.8
4,910,313	+		GFF4917	0.28	-0.6
4,910,316	-		GFF4917	0.29	-1.2
4,910,328	-		GFF4917	0.30	-0.5
4,910,332	-		GFF4917	0.31	-1.4
4,910,372	-		GFF4917	0.36	+0.3
4,910,420	-		GFF4917	0.43	-1.5
4,910,421	-		GFF4917	0.43	-0.9
4,910,426	-		GFF4917	0.44	-0.9
4,910,431	+		GFF4917	0.44	-1.8
4,910,458	+		GFF4917	0.48	-1.7
4,910,463	+		GFF4917	0.49	+1.0
4,910,463	+		GFF4917	0.49	-1.7
4,910,471	-		GFF4917	0.50	-2.4
4,910,471	-		GFF4917	0.50	-1.1
4,910,475	+		GFF4917	0.50	-0.9
4,910,478	-		GFF4917	0.51	+0.7
4,910,481	-		GFF4917	0.51	+0.7
4,910,481	-		GFF4917	0.51	-1.2
4,910,500	+		GFF4917	0.54	-0.6
4,910,513	+		GFF4917	0.56	-1.2
4,910,513	+		GFF4917	0.56	+0.1
4,910,520	+		GFF4917	0.57	-1.6
4,910,521	-		GFF4917	0.57	+0.6
4,910,521	-		GFF4917	0.57	+0.2
4,910,539	-		GFF4917	0.59	-2.1
4,910,544	+		GFF4917	0.60	-1.6
4,910,544	+		GFF4917	0.60	-1.2
4,910,552	-		GFF4917	0.61	-0.2
4,910,571	-		GFF4917	0.64	+0.3
4,910,806	-				-3.2
4,910,814	+				-0.3
4,910,816	+				-0.3
4,910,816	+				+0.7
4,910,822	-				+0.6
4,910,822	-				-1.4
4,910,822	-				-0.4
4,910,822	-				+0.1
4,910,822	-				-0.3
4,910,822	-				-1.4
4,910,822	-				+0.2
4,910,822	-				-0.8
4,910,822	-				+0.4
4,910,824	-				+0.1
4,910,824	-				-1.6
4,910,832	+				-1.2
4,910,832	+				-0.2
4,910,833	-				+0.6
4,910,840	-				-0.4
4,910,851	+				+0.2
4,910,854	-				+0.1
4,910,871	-				-0.1
4,910,911	+				-0.8
4,910,941	+				-0.1
4,910,959	-				-0.2
4,910,959	-				-1.4
4,910,972	+				-1.5
4,910,980	-		GFF4918	0.10	+0.2
4,911,029	+		GFF4918	0.13	-0.5
4,911,032	-		GFF4918	0.14	-0.6
4,911,034	+		GFF4918	0.14	+0.0
4,911,034	+		GFF4918	0.14	+0.9
4,911,034	+		GFF4918	0.14	-0.1
4,911,034	+		GFF4918	0.14	+0.2
4,911,034	+		GFF4918	0.14	-1.7
4,911,037	-		GFF4918	0.14	-0.5
4,911,037	-		GFF4918	0.14	-3.4
4,911,039	+		GFF4918	0.14	-0.7
4,911,039	+		GFF4918	0.14	-0.2
4,911,042	-		GFF4918	0.14	-0.9
4,911,057	+		GFF4918	0.15	-1.4
4,911,057	+		GFF4918	0.15	-0.5
4,911,057	+		GFF4918	0.15	+0.2
4,911,057	+		GFF4918	0.15	+1.2
4,911,057	+		GFF4918	0.15	-1.0
4,911,057	+		GFF4918	0.15	-1.5
4,911,057	+		GFF4918	0.15	-1.6
4,911,065	-		GFF4918	0.16	+1.3
4,911,065	-		GFF4918	0.16	-0.2
4,911,065	-		GFF4918	0.16	-0.2
4,911,065	-		GFF4918	0.16	+1.4
4,911,065	-		GFF4918	0.16	+0.3
4,911,096	+		GFF4918	0.18	+0.5
4,911,101	+		GFF4918	0.18	-1.3
4,911,101	+		GFF4918	0.18	-0.6
4,911,101	+		GFF4918	0.18	+0.6
4,911,101	+		GFF4918	0.18	+0.4
4,911,101	+		GFF4918	0.18	-0.1
4,911,101	+		GFF4918	0.18	-0.1
4,911,101	+		GFF4918	0.18	+1.1
4,911,101	+		GFF4918	0.18	-0.1
4,911,101	+		GFF4918	0.18	+0.4
4,911,101	+		GFF4918	0.18	-0.8
4,911,101	+		GFF4918	0.18	-0.1
4,911,101	+		GFF4918	0.18	-2.8
4,911,101	+		GFF4918	0.18	+0.3
4,911,101	+		GFF4918	0.18	-0.9
4,911,104	-		GFF4918	0.19	-0.4
4,911,104	-		GFF4918	0.19	-1.4
4,911,104	-		GFF4918	0.19	+1.6
4,911,106	+		GFF4918	0.19	-0.8
4,911,106	+		GFF4918	0.19	-1.6
4,911,106	+		GFF4918	0.19	-0.8
4,911,107	+		GFF4918	0.19	-1.1
4,911,108	+		GFF4918	0.19	+1.5
4,911,109	-		GFF4918	0.19	-0.7
4,911,109	-		GFF4918	0.19	-1.8
4,911,109	-		GFF4918	0.19	+0.8
4,911,109	-		GFF4918	0.19	+0.5
4,911,109	-		GFF4918	0.19	-2.1
4,911,109	-		GFF4918	0.19	+0.1
4,911,109	-		GFF4918	0.19	-1.7
4,911,109	-		GFF4918	0.19	+0.6
4,911,109	-		GFF4918	0.19	-0.9
4,911,109	-		GFF4918	0.19	-0.4
4,911,109	-		GFF4918	0.19	-0.7
4,911,109	-		GFF4918	0.19	-2.0
4,911,109	-		GFF4918	0.19	-0.5
4,911,110	-		GFF4918	0.19	+0.3
4,911,112	+		GFF4918	0.19	+0.7
4,911,112	+		GFF4918	0.19	-0.9
4,911,112	+		GFF4918	0.19	-0.2
4,911,112	+		GFF4918	0.19	-0.1
4,911,112	+		GFF4918	0.19	-0.6
4,911,114	-		GFF4918	0.19	+0.2
4,911,114	-		GFF4918	0.19	-2.4
4,911,114	-		GFF4918	0.19	+0.8
4,911,120	-		GFF4918	0.20	-1.0
4,911,120	-		GFF4918	0.20	-0.7
4,911,120	-		GFF4918	0.20	+0.5
4,911,120	-		GFF4918	0.20	-1.2
4,911,127	-		GFF4918	0.20	+1.1
4,911,150	-		GFF4918	0.22	-1.9
4,911,170	+		GFF4918	0.23	-0.4
4,911,170	+		GFF4918	0.23	+0.5
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