Strain Fitness in Sphingobium sp. HT1-2 around GFF4913

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,903,979	-				+0.3
4,903,987	+				+0.2
4,903,995	-				+0.0
4,904,012	-				-0.2
4,904,028	+				-0.6
4,904,050	-				-0.9
4,904,073	+				-1.2
4,904,073	+				-0.8
4,904,088	-				-1.0
4,904,094	-				-0.5
4,904,115	+				-1.2
4,904,115	+				-1.3
4,904,123	-				-0.8
4,904,125	-				+0.2
4,904,135	-				-1.0
4,904,135	-				+0.2
4,904,136	+				+0.0
4,904,137	+				+0.9
4,904,144	-				-0.2
4,904,146	+				-0.9
4,904,156	+				-1.9
4,904,164	-				-0.1
4,904,164	-				-1.6
4,904,165	+				-1.5
4,904,166	+				-0.5
4,904,168	-				-0.8
4,904,168	-				-0.3
4,904,173	-				-1.3
4,904,173	-				-2.0
4,904,173	-				+0.1
4,904,183	-				-2.9
4,904,195	+				-1.7
4,904,195	+				-1.8
4,904,200	+				-0.6
4,904,200	+				-1.6
4,904,200	+				-0.7
4,904,200	+				-1.3
4,904,200	+				-0.3
4,904,200	+				-0.9
4,904,200	+				+0.4
4,904,200	+				-1.1
4,904,200	+				-1.9
4,904,200	+				-0.1
4,904,208	-				-0.2
4,904,208	-				-0.8
4,904,208	-				-0.7
4,904,208	-				-1.8
4,904,208	-				-0.8
4,904,208	-				+0.4
4,904,248	+		GFF4912	0.14	-1.8
4,904,266	+		GFF4912	0.16	-0.7
4,904,268	+		GFF4912	0.16	-0.7
4,904,272	+		GFF4912	0.17	-1.8
4,904,285	+		GFF4912	0.18	-0.1
4,904,314	-		GFF4912	0.22	+0.2
4,904,324	-		GFF4912	0.23	+0.6
4,904,325	-		GFF4912	0.23	-0.8
4,904,331	+		GFF4912	0.24	-0.3
4,904,339	-		GFF4912	0.25	-2.1
4,904,352	+		GFF4912	0.27	-0.5
4,904,367	-		GFF4912	0.28	-0.4
4,904,386	+		GFF4912	0.31	-1.8
4,904,435	-		GFF4912	0.37	+0.1
4,904,457	+		GFF4912	0.39	-0.1
4,904,471	+		GFF4912	0.41	-0.7
4,904,471	+		GFF4912	0.41	+0.1
4,904,477	+		GFF4912	0.42	+0.2
4,904,486	+		GFF4912	0.43	-0.7
4,904,489	-		GFF4912	0.43	-1.1
4,904,507	+		GFF4912	0.45	-0.3
4,904,507	+		GFF4912	0.45	+0.3
4,904,507	+		GFF4912	0.45	-0.1
4,904,507	+		GFF4912	0.45	-0.2
4,904,507	+		GFF4912	0.45	-1.9
4,904,507	+		GFF4912	0.45	-2.4
4,904,514	-		GFF4912	0.46	-1.0
4,904,515	-		GFF4912	0.46	+0.4
4,904,515	-		GFF4912	0.46	+1.3
4,904,515	-		GFF4912	0.46	+0.7
4,904,515	-		GFF4912	0.46	+0.9
4,904,515	-		GFF4912	0.46	+0.1
4,904,515	-		GFF4912	0.46	+0.2
4,904,515	-		GFF4912	0.46	-0.5
4,904,517	+		GFF4912	0.47	-2.1
4,904,540	-		GFF4912	0.49	+0.8
4,904,540	-		GFF4912	0.49	+0.8
4,904,573	+		GFF4912	0.53	+0.6
4,904,573	-		GFF4912	0.53	-1.6
4,904,577	+		GFF4912	0.54	-0.9
4,904,577	+		GFF4912	0.54	+0.3
4,904,578	-		GFF4912	0.54	-0.7
4,904,585	-		GFF4912	0.55	-1.3
4,904,592	+		GFF4912	0.56	+0.7
4,904,609	-		GFF4912	0.58	+0.6
4,904,609	-		GFF4912	0.58	+0.4
4,904,630	-		GFF4912	0.60	-2.2
4,904,637	+		GFF4912	0.61	-1.3
4,904,637	+		GFF4912	0.61	-0.4
4,904,645	-		GFF4912	0.62	-0.7
4,904,654	+		GFF4912	0.63	-0.2
4,904,654	+		GFF4912	0.63	-1.6
4,904,667	-		GFF4912	0.65	-2.3
4,904,723	+		GFF4912	0.72	-0.7
4,904,729	-		GFF4912	0.72	-1.9
4,904,752	+		GFF4912	0.75	-0.2
4,904,760	-		GFF4912	0.76	+0.1
4,904,770	+		GFF4912	0.77	+0.8
4,904,777	-		GFF4912	0.78	+0.2
4,904,778	-		GFF4912	0.78	+0.1
4,904,798	+		GFF4912	0.81	-0.4
4,904,874	-				-0.2
4,904,874	-				+0.0
4,904,887	+				-0.6
4,904,891	+				+0.1
4,904,899	-				-1.1
4,904,929	-				-1.2
4,904,939	-				-1.0
4,904,940	+				-0.7
4,904,957	-				-0.2
4,904,959	+				-1.6
4,904,977	-				-0.4
4,904,983	-				+0.7
4,904,985	+				-2.2
4,904,988	-				-1.6
4,904,998	+				+1.7
4,905,015	+				-1.9
4,905,023	+				+1.5
4,905,023	-				-1.6
4,905,028	-				-1.7
4,905,072	+				-2.3
4,905,072	+				+0.1
4,905,074	-				-1.2
4,905,080	-		GFF4913	0.10	-1.9
4,905,080	-		GFF4913	0.10	-1.0
4,905,080	-		GFF4913	0.10	-0.4
4,905,152	+		GFF4913	0.17	-1.3
4,905,199	+		GFF4913	0.22	-0.1
4,905,211	+		GFF4913	0.23	-1.0
4,905,214	-		GFF4913	0.23	-0.4
4,905,214	-		GFF4913	0.23	+0.8
4,905,220	+		GFF4913	0.24	+0.9
4,905,220	+		GFF4913	0.24	+0.5
4,905,250	-		GFF4913	0.27	-0.1
4,905,267	+		GFF4913	0.29	+0.3
4,905,275	-		GFF4913	0.29	-0.5
4,905,275	-		GFF4913	0.29	-0.2
4,905,323	-		GFF4913	0.34	+0.2
4,905,323	-		GFF4913	0.34	+0.9
4,905,343	+		GFF4913	0.36	-3.0
4,905,348	+		GFF4913	0.37	-1.4
4,905,352	-		GFF4913	0.37	-1.1
4,905,377	-		GFF4913	0.39	+0.9
4,905,397	+		GFF4913	0.41	-0.8
4,905,397	+		GFF4913	0.41	-0.4
4,905,399	+		GFF4913	0.42	-0.1
4,905,414	+		GFF4913	0.43	-0.8
4,905,414	+		GFF4913	0.43	-0.9
4,905,414	+		GFF4913	0.43	-0.8
4,905,414	+		GFF4913	0.43	-0.7
4,905,414	+		GFF4913	0.43	-1.8
4,905,414	+		GFF4913	0.43	-1.6
4,905,414	+		GFF4913	0.43	-1.3
4,905,414	+		GFF4913	0.43	-0.8
4,905,422	-		GFF4913	0.44	-1.4
4,905,422	-		GFF4913	0.44	-0.7
4,905,422	-		GFF4913	0.44	+0.7
4,905,422	-		GFF4913	0.44	-0.5
4,905,422	-		GFF4913	0.44	+1.2
4,905,422	-		GFF4913	0.44	+0.8
4,905,422	-		GFF4913	0.44	+0.7
4,905,424	+		GFF4913	0.44	-0.4
4,905,424	+		GFF4913	0.44	-2.2
4,905,432	-		GFF4913	0.45	-2.2
4,905,433	+		GFF4913	0.45	-1.4
4,905,433	+		GFF4913	0.45	-1.4
4,905,441	-		GFF4913	0.46	+0.6
4,905,461	+		GFF4913	0.48	-1.3
4,905,461	+		GFF4913	0.48	-0.5
4,905,482	-		GFF4913	0.50	-0.6
4,905,497	+		GFF4913	0.51	-1.2
4,905,497	+		GFF4913	0.51	-2.2
4,905,505	-		GFF4913	0.52	-2.5
4,905,505	-		GFF4913	0.52	-0.1
4,905,505	-		GFF4913	0.52	-0.2
4,905,505	-		GFF4913	0.52	-2.4
4,905,512	+		GFF4913	0.53	+0.4
4,905,512	+		GFF4913	0.53	-0.6
4,905,512	+		GFF4913	0.53	-1.8
4,905,520	-		GFF4913	0.54	+0.7
4,905,532	+		GFF4913	0.55	-1.5
4,905,538	+		GFF4913	0.55	-0.5
4,905,546	-		GFF4913	0.56	-0.2
4,905,570	+		GFF4913	0.58	-1.8
4,905,584	-		GFF4913	0.60	-1.6
4,905,584	-		GFF4913	0.60	-1.6
4,905,600	+		GFF4913	0.61	+0.5
4,905,600	+		GFF4913	0.61	+0.3
4,905,600	+		GFF4913	0.61	+0.0
4,905,600	+		GFF4913	0.61	-0.5
4,905,600	+		GFF4913	0.61	+0.4
4,905,600	+		GFF4913	0.61	-0.2
4,905,600	+		GFF4913	0.61	-0.6
4,905,608	-		GFF4913	0.62	-0.6
4,905,608	-		GFF4913	0.62	-0.1
4,905,608	-		GFF4913	0.62	-0.5
4,905,608	-		GFF4913	0.62	-1.2
4,905,620	+		GFF4913	0.63	-0.1
4,905,641	+		GFF4913	0.65	-0.5
4,905,683	+		GFF4913	0.70	-0.9
4,905,683	+		GFF4913	0.70	+0.2
4,905,688	+		GFF4913	0.70	+0.2
4,905,691	-		GFF4913	0.70	+0.2
4,905,691	-		GFF4913	0.70	-1.0
4,905,708	-		GFF4913	0.72	-1.4
4,905,711	+		GFF4913	0.72	-0.6
4,905,711	+		GFF4913	0.72	-0.1
4,905,711	+		GFF4913	0.72	+0.0
4,905,719	-		GFF4913	0.73	+0.5
4,905,719	-		GFF4913	0.73	-0.8
4,905,719	-		GFF4913	0.73	-2.2
4,905,719	-		GFF4913	0.73	-0.5
4,905,719	-		GFF4913	0.73	-0.9
4,905,719	-		GFF4913	0.73	-1.0
4,905,720	-		GFF4913	0.73	-0.6
4,905,722	+		GFF4913	0.73	-0.9
4,905,730	-		GFF4913	0.74	-0.3
4,905,740	-		GFF4913	0.75	-1.3
4,905,749	+		GFF4913	0.76	-0.8
4,905,749	+		GFF4913	0.76	-2.3
4,905,749	+		GFF4913	0.76	-0.1
4,905,775	+		GFF4913	0.79	-0.1
4,905,776	+		GFF4913	0.79	-0.1
4,905,819	-		GFF4913	0.83	-0.4
4,905,824	-		GFF4913	0.84	-1.8
4,905,856	-		GFF4913	0.87	-0.7
4,905,867	+		GFF4913	0.88	-1.5
4,905,867	+		GFF4913	0.88	-1.2
4,905,875	-		GFF4913	0.89	-2.1
4,905,880	-		GFF4913	0.89	-2.4
4,905,885	+		GFF4913	0.90	-2.8
4,905,888	-		GFF4913	0.90	-0.7
4,905,890	+				-0.2
4,905,895	+				-1.2
4,905,895	+				+0.4
4,905,898	-				-0.1
4,905,908	-				-1.0
4,905,912	+				+0.1
4,905,912	+				+0.3
4,905,920	-				-0.8
4,905,920	-				+0.1
4,905,920	-				-1.7
4,905,920	-				-0.7
4,905,921	-				-0.5
4,905,942	+				-0.6
4,905,957	+				-0.4
4,905,957	+				-0.1
4,905,965	-				-1.1
4,905,965	-				+0.5
4,905,965	-				-0.2
4,905,965	-				-2.4
4,906,020	+				-0.8
4,906,020	+				-0.1
4,906,020	+				+0.7
4,906,020	+				+0.1
4,906,020	+				-0.3
4,906,027	-				-1.2
4,906,034	+				-0.5
4,906,038	-				+1.0
4,906,039	+				-1.3
4,906,049	+				-1.3
4,906,049	+				-1.4
4,906,049	+				+1.0
4,906,049	+				+1.3
4,906,049	+				-0.4
4,906,049	+				+0.1
4,906,049	+				+0.7
4,906,049	+				-2.4
4,906,050	+				-0.2
4,906,050	+				-1.3
4,906,057	-				-2.3
4,906,057	-				-0.6
4,906,057	-				-0.9
4,906,057	-				+0.7
4,906,057	-				+0.1
4,906,057	-				-0.9
4,906,057	-				-1.8
4,906,057	-				-0.2
4,906,057	-				-0.9
4,906,057	-				+0.7
4,906,057	-				+0.8
4,906,063	-				-3.2
4,906,063	-				-1.0
4,906,077	+				-0.4
4,906,085	-				+0.7
4,906,092	-				-0.6
4,906,140	+		GFF4914	0.12	+0.3
4,906,140	-		GFF4914	0.12	-3.0
4,906,145	+		GFF4914	0.13	-0.3
4,906,145	+		GFF4914	0.13	-0.4
4,906,145	+		GFF4914	0.13	+0.4
4,906,145	+		GFF4914	0.13	+0.3
4,906,145	+		GFF4914	0.13	-0.0
4,906,150	+		GFF4914	0.13	-1.1
4,906,153	-		GFF4914	0.13	-0.8
4,906,153	-		GFF4914	0.13	-2.8
4,906,153	-		GFF4914	0.13	+1.0
4,906,153	-		GFF4914	0.13	-2.1
4,906,178	+		GFF4914	0.15	-1.4
4,906,186	-		GFF4914	0.16	+0.8
4,906,186	-		GFF4914	0.16	+0.5
4,906,188	-		GFF4914	0.16	-1.9
4,906,188	-		GFF4914	0.16	+0.4
4,906,188	-		GFF4914	0.16	+0.1
4,906,202	+		GFF4914	0.17	-0.8
4,906,228	+		GFF4914	0.19	-1.4
4,906,228	+		GFF4914	0.19	-1.9
4,906,228	+		GFF4914	0.19	-1.3
4,906,228	+		GFF4914	0.19	-0.9
4,906,233	+		GFF4914	0.20	-1.0
4,906,233	+		GFF4914	0.20	-0.4
4,906,233	+		GFF4914	0.20	-1.0
4,906,234	+		GFF4914	0.20	+0.4
4,906,238	+		GFF4914	0.20	-0.2
4,906,238	+		GFF4914	0.20	-2.3
4,906,238	+		GFF4914	0.20	-0.4
4,906,238	+		GFF4914	0.20	-1.9
4,906,243	+		GFF4914	0.20	-1.3
4,906,246	-		GFF4914	0.21	+0.2
4,906,246	-		GFF4914	0.21	+1.1
4,906,246	-		GFF4914	0.21	-2.8
4,906,246	-		GFF4914	0.21	-1.8
4,906,246	-		GFF4914	0.21	-1.0
4,906,246	-		GFF4914	0.21	-1.4
4,906,246	-		GFF4914	0.21	-1.6
4,906,246	-		GFF4914	0.21	-2.1
4,906,246	-		GFF4914	0.21	+0.7
4,906,258	-		GFF4914	0.22	+0.3
4,906,268	-		GFF4914	0.22	+0.0
4,906,272	-		GFF4914	0.23	+0.2
4,906,281	-		GFF4914	0.23	-0.7
4,906,292	+		GFF4914	0.24	-0.2
4,906,293	-		GFF4914	0.24	-2.3
4,906,303	-		GFF4914	0.25	-0.0
4,906,303	-		GFF4914	0.25	-0.7
4,906,321	+		GFF4914	0.27	-2.3
4,906,348	-		GFF4914	0.29	-0.4
4,906,350	+		GFF4914	0.29	-0.4
4,906,368	+		GFF4914	0.30	-0.0
4,906,368	+		GFF4914	0.30	-1.4
4,906,368	+		GFF4914	0.30	+0.0
4,906,368	+		GFF4914	0.30	+0.1
4,906,373	+		GFF4914	0.31	-0.1
4,906,373	+		GFF4914	0.31	-0.7
4,906,376	-		GFF4914	0.31	-1.0
4,906,376	-		GFF4914	0.31	-0.1
4,906,381	-		GFF4914	0.31	-1.7
4,906,381	-		GFF4914	0.31	+0.0
4,906,381	-		GFF4914	0.31	-0.2
4,906,394	+		GFF4914	0.32	-0.6
4,906,409	+		GFF4914	0.34	-0.4
4,906,409	+		GFF4914	0.34	+0.4
4,906,450	+		GFF4914	0.37	-0.2
4,906,459	+		GFF4914	0.38	-0.0
4,906,459	+		GFF4914	0.38	-0.3
4,906,459	+		GFF4914	0.38	-0.0
4,906,459	+		GFF4914	0.38	-2.1
4,906,459	+		GFF4914	0.38	-0.0
4,906,459	+		GFF4914	0.38	+0.6
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