Strain Fitness in Sphingobium sp. HT1-2 around GFF4905

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,895,590	+				+0.7
4,895,598	-				+0.0
4,895,651	-				+0.9
4,895,664	+		GFF4904	0.10	-0.1
4,895,692	+		GFF4904	0.13	+0.4
4,895,701	+		GFF4904	0.14	+0.6
4,895,701	+		GFF4904	0.14	+0.0
4,895,701	+		GFF4904	0.14	+0.2
4,895,704	-		GFF4904	0.14	+1.1
4,895,709	-		GFF4904	0.15	-1.8
4,895,709	-		GFF4904	0.15	-0.6
4,895,709	-		GFF4904	0.15	-2.1
4,895,723	+		GFF4904	0.16	+0.7
4,895,723	+		GFF4904	0.16	+0.3
4,895,724	-		GFF4904	0.16	-2.8
4,895,731	-		GFF4904	0.17	-0.7
4,895,731	-		GFF4904	0.17	-0.6
4,895,751	-		GFF4904	0.19	+0.2
4,895,757	+		GFF4904	0.20	-2.3
4,895,765	-		GFF4904	0.21	+0.2
4,895,765	-		GFF4904	0.21	-0.6
4,895,767	+		GFF4904	0.21	+1.2
4,895,767	+		GFF4904	0.21	+0.1
4,895,772	+		GFF4904	0.21	+0.5
4,895,772	+		GFF4904	0.21	-1.7
4,895,772	+		GFF4904	0.21	+0.4
4,895,772	+		GFF4904	0.21	-0.7
4,895,772	+		GFF4904	0.21	+0.0
4,895,780	-		GFF4904	0.22	-0.4
4,895,780	-		GFF4904	0.22	-0.9
4,895,780	-		GFF4904	0.22	-0.5
4,895,780	-		GFF4904	0.22	-2.0
4,895,780	-		GFF4904	0.22	-0.2
4,895,780	-		GFF4904	0.22	-1.3
4,895,815	-		GFF4904	0.26	-1.3
4,895,815	-		GFF4904	0.26	+0.5
4,895,815	-		GFF4904	0.26	-0.3
4,895,816	+		GFF4904	0.26	-1.0
4,895,817	+		GFF4904	0.26	-1.6
4,895,824	-		GFF4904	0.27	-0.5
4,895,832	-		GFF4904	0.27	-0.1
4,895,832	-		GFF4904	0.27	-0.6
4,895,848	+		GFF4904	0.29	-0.2
4,895,848	+		GFF4904	0.29	+0.4
4,895,848	+		GFF4904	0.29	-1.6
4,895,848	+		GFF4904	0.29	-2.8
4,895,848	+		GFF4904	0.29	-0.8
4,895,856	-		GFF4904	0.30	-2.1
4,895,856	-		GFF4904	0.30	+0.4
4,895,856	-		GFF4904	0.30	-2.4
4,895,860	+		GFF4904	0.30	-1.9
4,895,862	-		GFF4904	0.30	+0.5
4,895,879	-		GFF4904	0.32	-2.0
4,895,879	-		GFF4904	0.32	-1.4
4,895,879	-		GFF4904	0.32	-2.4
4,895,886	-		GFF4904	0.33	-1.1
4,895,898	+		GFF4904	0.34	+0.4
4,895,906	-		GFF4904	0.35	+0.1
4,895,932	-		GFF4904	0.38	-0.5
4,895,932	-		GFF4904	0.38	-1.0
4,895,933	+		GFF4904	0.38	+0.2
4,895,941	-		GFF4904	0.38	+0.4
4,895,943	+		GFF4904	0.39	-0.8
4,895,943	+		GFF4904	0.39	-0.5
4,895,951	-		GFF4904	0.39	-0.0
4,895,951	-		GFF4904	0.39	-1.6
4,895,961	-		GFF4904	0.40	-0.4
4,895,965	+		GFF4904	0.41	-2.3
4,895,979	+		GFF4904	0.42	-0.8
4,896,038	+		GFF4904	0.48	-1.2
4,896,038	+		GFF4904	0.48	-1.0
4,896,038	+		GFF4904	0.48	+0.1
4,896,046	-		GFF4904	0.49	-0.3
4,896,046	-		GFF4904	0.49	-2.0
4,896,046	-		GFF4904	0.49	-1.4
4,896,046	-		GFF4904	0.49	-0.1
4,896,046	-		GFF4904	0.49	-1.1
4,896,046	-		GFF4904	0.49	-2.4
4,896,046	-		GFF4904	0.49	-0.8
4,896,048	+		GFF4904	0.49	-1.9
4,896,048	+		GFF4904	0.49	-0.7
4,896,048	+		GFF4904	0.49	-0.0
4,896,048	+		GFF4904	0.49	-0.7
4,896,056	-		GFF4904	0.50	-1.4
4,896,056	-		GFF4904	0.50	-0.2
4,896,056	-		GFF4904	0.50	-0.0
4,896,056	-		GFF4904	0.50	+0.2
4,896,064	+		GFF4904	0.51	-0.4
4,896,094	+		GFF4904	0.54	-0.7
4,896,105	+		GFF4904	0.55	-0.2
4,896,105	+		GFF4904	0.55	-2.4
4,896,105	+		GFF4904	0.55	-1.6
4,896,105	+		GFF4904	0.55	-2.2
4,896,105	+		GFF4904	0.55	-1.0
4,896,105	+		GFF4904	0.55	-2.0
4,896,105	+		GFF4904	0.55	+0.4
4,896,105	+		GFF4904	0.55	-0.2
4,896,111	+		GFF4904	0.56	+1.1
4,896,113	-		GFF4904	0.56	-0.1
4,896,113	-		GFF4904	0.56	-0.1
4,896,113	-		GFF4904	0.56	-1.9
4,896,113	-		GFF4904	0.56	-2.0
4,896,113	-		GFF4904	0.56	-0.8
4,896,113	-		GFF4904	0.56	-2.6
4,896,113	-		GFF4904	0.56	-0.4
4,896,113	-		GFF4904	0.56	-1.5
4,896,113	-		GFF4904	0.56	+1.6
4,896,113	-		GFF4904	0.56	-2.1
4,896,122	+		GFF4904	0.57	+0.1
4,896,122	+		GFF4904	0.57	-1.2
4,896,124	+		GFF4904	0.57	+1.5
4,896,130	-		GFF4904	0.58	-0.2
4,896,135	-		GFF4904	0.58	-1.0
4,896,140	+		GFF4904	0.59	-0.8
4,896,148	-		GFF4904	0.59	-1.6
4,896,148	-		GFF4904	0.59	-0.0
4,896,158	-		GFF4904	0.60	-1.8
4,896,191	+		GFF4904	0.64	-0.3
4,896,191	+		GFF4904	0.64	-0.6
4,896,199	-		GFF4904	0.65	-1.2
4,896,201	-		GFF4904	0.65	-0.3
4,896,213	+		GFF4904	0.66	+0.8
4,896,221	-		GFF4904	0.67	-1.0
4,896,227	+		GFF4904	0.67	-0.8
4,896,227	+		GFF4904	0.67	-0.8
4,896,227	+		GFF4904	0.67	-0.8
4,896,227	+		GFF4904	0.67	-1.3
4,896,227	+		GFF4904	0.67	-0.6
4,896,235	-		GFF4904	0.68	-0.4
4,896,235	-		GFF4904	0.68	-0.6
4,896,235	-		GFF4904	0.68	-1.4
4,896,235	-		GFF4904	0.68	+0.2
4,896,242	+		GFF4904	0.69	-0.6
4,896,242	+		GFF4904	0.69	-0.4
4,896,242	+		GFF4904	0.69	+0.1
4,896,242	+		GFF4904	0.69	-0.5
4,896,250	-		GFF4904	0.70	-1.7
4,896,250	-		GFF4904	0.70	+0.3
4,896,250	-		GFF4904	0.70	-0.1
4,896,250	-		GFF4904	0.70	-0.7
4,896,250	-		GFF4904	0.70	-1.0
4,896,252	+		GFF4904	0.70	-1.1
4,896,252	+		GFF4904	0.70	-1.0
4,896,265	-		GFF4904	0.71	-1.1
4,896,265	-		GFF4904	0.71	+0.4
4,896,276	+		GFF4904	0.72	+0.5
4,896,278	+		GFF4904	0.73	+0.2
4,896,284	-		GFF4904	0.73	-0.1
4,896,284	-		GFF4904	0.73	-1.7
4,896,284	-		GFF4904	0.73	-1.0
4,896,284	-		GFF4904	0.73	-1.9
4,896,284	-		GFF4904	0.73	-1.1
4,896,284	-		GFF4904	0.73	-0.1
4,896,286	+		GFF4904	0.73	+0.3
4,896,286	-		GFF4904	0.73	-1.2
4,896,286	-		GFF4904	0.73	+0.0
4,896,289	+		GFF4904	0.74	-1.1
4,896,291	+		GFF4904	0.74	-0.8
4,896,294	-		GFF4904	0.74	-1.0
4,896,294	-		GFF4904	0.74	+0.5
4,896,316	+		GFF4904	0.77	+0.4
4,896,324	+		GFF4904	0.77	+0.0
4,896,324	+		GFF4904	0.77	+1.0
4,896,324	+		GFF4904	0.77	-0.5
4,896,327	-		GFF4904	0.78	+0.2
4,896,331	+		GFF4904	0.78	-1.4
4,896,332	-		GFF4904	0.78	+1.1
4,896,332	-		GFF4904	0.78	-0.5
4,896,332	-		GFF4904	0.78	-1.3
4,896,341	+		GFF4904	0.79	-2.9
4,896,341	+		GFF4904	0.79	-1.0
4,896,341	+		GFF4904	0.79	-1.3
4,896,341	+		GFF4904	0.79	-0.4
4,896,341	+		GFF4904	0.79	+0.0
4,896,341	+		GFF4904	0.79	+0.5
4,896,341	+		GFF4904	0.79	-1.9
4,896,341	+		GFF4904	0.79	-0.8
4,896,341	+		GFF4904	0.79	+1.6
4,896,341	+		GFF4904	0.79	-0.4
4,896,341	+		GFF4904	0.79	-2.5
4,896,349	-		GFF4904	0.80	-0.4
4,896,349	-		GFF4904	0.80	+0.5
4,896,349	-		GFF4904	0.80	+1.1
4,896,349	-		GFF4904	0.80	-0.4
4,896,349	-		GFF4904	0.80	-0.6
4,896,349	-		GFF4904	0.80	-2.1
4,896,349	-		GFF4904	0.80	-0.1
4,896,349	-		GFF4904	0.80	-0.1
4,896,359	-		GFF4904	0.81	+1.0
4,896,359	-		GFF4904	0.81	+0.1
4,896,384	+		GFF4904	0.83	-1.3
4,896,424	-		GFF4904	0.88	-1.6
4,896,427	-		GFF4904	0.88	+0.2
4,896,432	-		GFF4904	0.88	-1.0
4,896,459	-				-1.1
4,896,460	-				+0.4
4,896,461	+				-1.1
4,896,469	-				-0.1
4,896,469	-				-1.6
4,896,469	-				-1.5
4,896,471	+				-0.7
4,896,479	+				+0.2
4,896,479	+				+0.7
4,896,487	-				+0.3
4,896,507	+				+0.3
4,896,549	+				-1.8
4,896,549	+				-1.7
4,896,558	+				+0.2
4,896,558	+				-0.7
4,896,566	-				+0.5
4,896,566	-				-1.2
4,896,586	+				-1.8
4,896,587	+				-1.2
4,896,587	+				-0.1
4,896,587	+				-1.0
4,896,587	+				-1.6
4,896,587	+				+0.8
4,896,587	+				-1.8
4,896,594	-				+0.9
4,896,595	-				+0.9
4,896,595	-				+0.6
4,896,595	-				+0.0
4,896,595	-				-0.6
4,896,595	-				+0.6
4,896,602	+				-0.2
4,896,602	+				-0.9
4,896,607	+				-0.3
4,896,610	-				-2.4
4,896,610	-				-0.4
4,896,610	-				-0.5
4,896,610	-				+0.1
4,896,610	-				+0.5
4,896,634	-				-0.3
4,896,647	-				-1.4
4,896,647	-				-1.4
4,896,647	-				+0.6
4,896,671	+		GFF4905	0.12	-0.9
4,896,672	+		GFF4905	0.12	-1.5
4,896,679	-		GFF4905	0.13	+0.2
4,896,685	+		GFF4905	0.14	-1.0
4,896,708	+		GFF4905	0.17	-0.5
4,896,716	-		GFF4905	0.19	+1.3
4,896,727	+		GFF4905	0.20	-0.4
4,896,727	+		GFF4905	0.20	-1.4
4,896,727	+		GFF4905	0.20	-2.2
4,896,735	-		GFF4905	0.21	-0.6
4,896,742	-		GFF4905	0.22	-0.9
4,896,770	-		GFF4905	0.27	-1.0
4,896,780	-		GFF4905	0.28	-0.3
4,896,780	-		GFF4905	0.28	-0.5
4,896,782	-		GFF4905	0.28	-1.0
4,896,787	-		GFF4905	0.29	-0.0
4,896,795	+		GFF4905	0.30	-0.9
4,896,815	-		GFF4905	0.33	-0.7
4,896,817	+		GFF4905	0.33	+0.8
4,896,858	-		GFF4905	0.40	-0.6
4,896,865	-		GFF4905	0.41	-0.6
4,896,897	+		GFF4905	0.45	-3.4
4,896,905	-		GFF4905	0.46	-0.9
4,896,939	+		GFF4905	0.51	+0.1
4,896,939	+		GFF4905	0.51	-0.1
4,896,947	-		GFF4905	0.53	+0.4
4,896,952	-		GFF4905	0.53	-0.6
4,896,971	-		GFF4905	0.56	+0.4
4,896,972	+		GFF4905	0.56	+0.4
4,897,023	+		GFF4905	0.64	-0.2
4,897,031	-		GFF4905	0.65	-0.6
4,897,033	+		GFF4905	0.65	+0.2
4,897,033	+		GFF4905	0.65	-1.5
4,897,033	+		GFF4905	0.65	+0.7
4,897,056	-		GFF4905	0.69	+0.6
4,897,056	-		GFF4905	0.69	-0.9
4,897,056	-		GFF4905	0.69	+0.4
4,897,056	-		GFF4905	0.69	-1.1
4,897,069	+		GFF4905	0.70	-0.1
4,897,151	+		GFF4905	0.83	-0.3
4,897,161	+		GFF4905	0.84	-0.4
4,897,161	+		GFF4905	0.84	+0.0
4,897,163	-		GFF4905	0.84	+0.0
4,897,169	-		GFF4905	0.85	-0.5
4,897,169	-		GFF4905	0.85	-0.6
4,897,171	+		GFF4905	0.85	-0.6
4,897,175	+		GFF4905	0.86	-1.1
4,897,181	+		GFF4905	0.87	-0.2
4,897,181	+		GFF4905	0.87	-0.7
4,897,181	+		GFF4905	0.87	-0.9
4,897,181	+		GFF4905	0.87	-0.1
4,897,183	-		GFF4905	0.87	-1.7
4,897,189	-		GFF4905	0.88	+1.0
4,897,189	-		GFF4905	0.88	+0.2
4,897,189	-		GFF4905	0.88	+0.3
4,897,189	-		GFF4905	0.88	-1.4
4,897,189	-		GFF4905	0.88	-0.6
4,897,189	-		GFF4905	0.88	+0.4
4,897,206	+				-0.9
4,897,210	+				-1.8
4,897,213	-				-2.7
4,897,213	-				-0.6
4,897,213	-				-0.8
4,897,213	-				+0.1
4,897,213	-				-0.3
4,897,213	-				-1.1
4,897,226	-				-0.4
4,897,271	-				-1.6
4,897,273	+				-3.2
4,897,273	+				-1.9
4,897,277	+				-1.8
4,897,277	+				+0.6
4,897,277	+				+0.2
4,897,281	-				+0.2
4,897,285	-				+0.4
4,897,285	-				-0.8
4,897,291	+				-1.1
4,897,291	+				-0.7
4,897,298	+				+0.8
4,897,306	-				-1.8
4,897,307	+				+0.1
4,897,307	-				-0.2
4,897,312	+				-0.8
4,897,315	-				+0.5
4,897,323	-				-1.1
4,897,325	+				+0.2
4,897,325	+				-0.4
4,897,325	+				+0.5
4,897,325	+				-2.4
4,897,325	+				-0.4
4,897,325	+				-0.6
4,897,333	-				+0.5
4,897,333	-				-1.0
4,897,334	-				+1.6
4,897,338	-				-1.1
4,897,339	-				-3.5
4,897,346	+				+0.4
4,897,375	+				-0.8
4,897,383	-				+0.4
4,897,398	-				-0.3
4,897,408	-				-0.8
4,897,415	-				+0.5
4,897,433	+				-0.8
4,897,434	+				+0.7
4,897,434	+				+0.2
4,897,434	+				+0.1
4,897,434	+				+1.0
4,897,434	+				-3.1
4,897,435	-				+0.1
4,897,436	-				-0.7
4,897,441	-				-1.1
4,897,441	-				-1.1
4,897,441	-				+0.1
4,897,441	-				-1.3
4,897,441	-				-1.2
4,897,441	-				+0.3
4,897,442	-				+0.0
4,897,442	-				-1.9
4,897,442	-				-1.0
4,897,442	-				-1.4
4,897,442	-				-1.7
4,897,442	-				+0.1
4,897,444	+				-0.4
4,897,456	+				-1.3
4,897,456	+				+0.4
4,897,456	+				-0.9
4,897,463	-				-0.2
4,897,464	-				-0.6
4,897,472	+				-2.4
4,897,477	+				-0.3
4,897,477	+				+0.3
4,897,500	+				-1.2
4,897,500	+				-1.4
4,897,500	+				-1.2
4,897,537	-				-1.0
4,897,543	-				+0.2
4,897,544	+				-0.4
4,897,545	+				-1.3
4,897,545	+				-0.2
4,897,552	-				-1.1
4,897,554	-				+0.3
4,897,554	-				+0.8
4,897,554	-				-0.6
4,897,557	+				-0.6
4,897,557	+				-2.6
4,897,557	+				+0.2
4,897,565	-				+0.5
4,897,565	-				-1.3
4,897,565	-				+0.5
4,897,565	-				+0.8
4,897,566	-				-0.4
4,897,573	+				-0.6
4,897,588	+				-1.4
4,897,599	+				-0.1
4,897,600	+				+1.1
4,897,605	+				+0.5
4,897,634	-				-1.1
4,897,634	-				-1.9
4,897,636	-				-2.3
4,897,641	+				+0.7
4,897,641	+				-1.6
4,897,726	+		GFF4906	0.10	-1.1
4,897,733	-		GFF4906	0.10	-1.2
4,897,734	-		GFF4906	0.10	-0.8
4,897,734	-		GFF4906	0.10	-0.8
4,897,734	-		GFF4906	0.10	-2.1
4,897,736	+		GFF4906	0.11	-0.7
4,897,736	+		GFF4906	0.11	-1.4
4,897,744	-		GFF4906	0.11	-0.2
4,897,744	-		GFF4906	0.11	-2.8
4,897,744	-		GFF4906	0.11	-1.6
4,897,777	+		GFF4906	0.12	-0.0
4,897,777	+		GFF4906	0.12	+0.5
4,897,777	+		GFF4906	0.12	+1.2
4,897,777	+		GFF4906	0.12	+0.3
4,897,777	+		GFF4906	0.12	+0.5
4,897,783	+		GFF4906	0.13	-1.7
4,897,842	+		GFF4906	0.15	-0.2
4,897,854	+		GFF4906	0.15	+0.1
4,897,857	+		GFF4906	0.16	+0.2
4,897,857	+		GFF4906	0.16	-2.9
4,897,881	+		GFF4906	0.17	-0.2
4,897,881	+		GFF4906	0.17	+1.7
4,897,887	-		GFF4906	0.17	-0.3
4,897,897	-		GFF4906	0.17	+1.0
4,897,898	+		GFF4906	0.17	-0.3
4,897,898	+		GFF4906	0.17	+0.4
4,897,898	+		GFF4906	0.17	-1.3
4,897,906	-		GFF4906	0.18	-0.6
4,897,906	-		GFF4906	0.18	-3.1
4,897,914	-		GFF4906	0.18	-1.0
4,897,927	-		GFF4906	0.18	+0.8
4,897,949	+		GFF4906	0.19	-0.6
4,897,949	+		GFF4906	0.19	-0.1
4,897,957	-		GFF4906	0.20	-1.4
4,897,961	+		GFF4906	0.20	-1.5
4,897,964	-		GFF4906	0.20	-1.0
4,898,003	-		GFF4906	0.22	-1.2
4,898,012	+		GFF4906	0.22	-0.7
4,898,012	+		GFF4906	0.22	-0.0
4,898,012	+		GFF4906	0.22	-0.4
4,898,012	+		GFF4906	0.22	-0.4
4,898,012	+		GFF4906	0.22	-0.3
4,898,022	+		GFF4906	0.22	-1.0
4,898,022	+		GFF4906	0.22	+0.1
4,898,081	+		GFF4906	0.25	-1.7
4,898,123	+		GFF4906	0.27	-0.1
4,898,126	-		GFF4906	0.27	+1.2
4,898,154	+		GFF4906	0.28	+0.5
4,898,164	+		GFF4906	0.28	+0.2
4,898,164	+		GFF4906	0.28	-1.8
4,898,164	-		GFF4906	0.28	+0.6
4,898,167	-		GFF4906	0.28	+1.1
4,898,167	-		GFF4906	0.28	-0.7
4,898,169	+		GFF4906	0.28	-0.5
4,898,172	-		GFF4906	0.29	-1.1
4,898,172	-		GFF4906	0.29	-0.7
4,898,172	-		GFF4906	0.29	-1.5
4,898,172	-		GFF4906	0.29	-1.5
4,898,248	+		GFF4906	0.32	-1.1
4,898,255	+		GFF4906	0.32	+0.1
4,898,256	-		GFF4906	0.32	+0.2
4,898,269	+		GFF4906	0.33	-1.9