Strain Fitness in Sphingobium sp. HT1-2 around GFF4903

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,892,886	+				-0.6
4,892,886	+				-0.3
4,892,899	+				-0.5
4,892,899	+				-1.4
4,892,899	+				-0.6
4,892,899	+				-0.3
4,892,915	-				+0.3
4,892,933	+				-0.5
4,892,933	+				-0.9
4,892,933	+				-0.3
4,892,941	-				-2.1
4,892,941	-				-2.0
4,892,966	+				-0.4
4,892,966	+				-0.5
4,892,966	+				-0.7
4,892,967	-				-0.3
4,892,974	-				-1.1
4,892,974	-				-0.5
4,892,976	+				+1.1
4,892,984	-				-1.2
4,892,985	+				-2.8
4,892,985	+				-0.0
4,892,993	-				-0.6
4,892,993	-				-0.1
4,892,993	-				-2.9
4,892,994	-				-0.9
4,893,004	+				+0.5
4,893,018	+				+0.7
4,893,029	+				+0.1
4,893,029	+				-0.9
4,893,030	+				-2.3
4,893,042	-				+1.2
4,893,051	+				+0.1
4,893,054	+				+0.4
4,893,062	-				-0.0
4,893,062	-				-0.4
4,893,073	+				+1.5
4,893,073	+				-0.3
4,893,076	-		GFF4902	0.10	-1.6
4,893,078	+		GFF4902	0.10	-0.6
4,893,081	-		GFF4902	0.11	-1.3
4,893,107	-		GFF4902	0.13	+0.3
4,893,112	+		GFF4902	0.14	+0.6
4,893,112	-		GFF4902	0.14	-0.7
4,893,158	+		GFF4902	0.19	-1.8
4,893,161	-		GFF4902	0.19	-0.3
4,893,166	-		GFF4902	0.20	-0.3
4,893,166	-		GFF4902	0.20	+0.1
4,893,170	-		GFF4902	0.20	+1.7
4,893,185	-		GFF4902	0.22	+0.2
4,893,195	-		GFF4902	0.23	-1.4
4,893,195	-		GFF4902	0.23	-0.9
4,893,195	-		GFF4902	0.23	-2.8
4,893,212	-		GFF4902	0.25	-0.7
4,893,241	+		GFF4902	0.28	-1.0
4,893,245	+		GFF4902	0.29	+0.4
4,893,246	+		GFF4902	0.29	-1.9
4,893,251	+		GFF4902	0.29	+0.6
4,893,251	+		GFF4902	0.29	-0.4
4,893,251	+		GFF4902	0.29	-0.3
4,893,253	-		GFF4902	0.30	-1.4
4,893,255	+		GFF4902	0.30	-0.7
4,893,259	-		GFF4902	0.30	-1.8
4,893,259	-		GFF4902	0.30	-1.4
4,893,272	+		GFF4902	0.32	-1.2
4,893,277	+		GFF4902	0.32	-0.9
4,893,280	-		GFF4902	0.33	-1.8
4,893,282	+		GFF4902	0.33	+0.4
4,893,282	+		GFF4902	0.33	-0.2
4,893,290	-		GFF4902	0.34	-0.8
4,893,291	+		GFF4902	0.34	-1.9
4,893,311	-		GFF4902	0.36	-1.8
4,893,317	-		GFF4902	0.37	-1.3
4,893,342	+		GFF4902	0.40	+0.3
4,893,342	+		GFF4902	0.40	-0.9
4,893,342	+		GFF4902	0.40	-0.1
4,893,342	+		GFF4902	0.40	+0.1
4,893,350	-		GFF4902	0.40	+1.3
4,893,362	-		GFF4902	0.42	-0.2
4,893,377	-		GFF4902	0.43	-1.0
4,893,417	+		GFF4902	0.48	-0.6
4,893,425	-		GFF4902	0.49	-0.7
4,893,425	-		GFF4902	0.49	-0.8
4,893,446	+		GFF4902	0.51	-1.7
4,893,446	+		GFF4902	0.51	+0.6
4,893,446	+		GFF4902	0.51	-0.0
4,893,450	+		GFF4902	0.52	-3.2
4,893,450	+		GFF4902	0.52	-2.5
4,893,451	+		GFF4902	0.52	-1.0
4,893,452	-		GFF4902	0.52	-0.7
4,893,454	-		GFF4902	0.52	+1.0
4,893,454	-		GFF4902	0.52	-0.6
4,893,454	-		GFF4902	0.52	-1.4
4,893,456	+		GFF4902	0.52	-1.1
4,893,458	-		GFF4902	0.52	-1.7
4,893,482	+		GFF4902	0.55	-0.4
4,893,487	+		GFF4902	0.56	-1.0
4,893,487	+		GFF4902	0.56	+0.5
4,893,495	-		GFF4902	0.57	-1.0
4,893,495	-		GFF4902	0.57	-0.3
4,893,497	+		GFF4902	0.57	-1.9
4,893,511	+		GFF4902	0.58	-1.9
4,893,525	+		GFF4902	0.60	-0.7
4,893,546	-		GFF4902	0.62	-0.3
4,893,546	-		GFF4902	0.62	-0.9
4,893,546	-		GFF4902	0.62	+0.2
4,893,546	-		GFF4902	0.62	+1.3
4,893,551	-		GFF4902	0.63	+0.0
4,893,553	+		GFF4902	0.63	-2.1
4,893,563	+		GFF4902	0.64	+0.0
4,893,567	+		GFF4902	0.65	+0.1
4,893,567	+		GFF4902	0.65	-0.3
4,893,569	+		GFF4902	0.65	-2.4
4,893,570	-		GFF4902	0.65	+0.0
4,893,570	-		GFF4902	0.65	-0.6
4,893,570	-		GFF4902	0.65	-1.1
4,893,583	-		GFF4902	0.66	-0.4
4,893,600	-		GFF4902	0.68	-0.6
4,893,602	+		GFF4902	0.68	-2.3
4,893,607	+		GFF4902	0.69	+0.7
4,893,608	+		GFF4902	0.69	-0.6
4,893,608	+		GFF4902	0.69	+0.3
4,893,610	-		GFF4902	0.69	-1.4
4,893,616	-		GFF4902	0.70	+0.4
4,893,616	-		GFF4902	0.70	-0.0
4,893,616	-		GFF4902	0.70	-0.6
4,893,616	-		GFF4902	0.70	-2.4
4,893,616	-		GFF4902	0.70	-0.2
4,893,621	-		GFF4902	0.71	-1.7
4,893,626	+		GFF4902	0.71	+0.7
4,893,626	+		GFF4902	0.71	+0.8
4,893,626	+		GFF4902	0.71	+0.1
4,893,636	+		GFF4902	0.72	-1.2
4,893,683	-		GFF4902	0.77	+0.6
4,893,724	+		GFF4902	0.82	-1.3
4,893,732	-		GFF4902	0.83	+0.4
4,893,741	+		GFF4902	0.84	-2.4
4,893,741	+		GFF4902	0.84	-0.3
4,893,744	-		GFF4902	0.84	-0.7
4,893,744	-		GFF4902	0.84	+0.1
4,893,765	+		GFF4902	0.87	-1.0
4,893,796	+				+0.4
4,893,802	+				-2.3
4,893,804	-				-0.5
4,893,810	-				+0.9
4,893,810	-				-3.1
4,893,810	-				-1.1
4,893,823	-				-1.4
4,893,840	+				-0.9
4,893,840	+				-1.3
4,893,855	-				-0.6
4,893,857	+				+0.2
4,893,865	-				+0.5
4,893,873	-				-1.7
4,893,889	+				-0.7
4,893,896	+				+0.0
4,893,897	-				-0.3
4,893,903	-				+0.7
4,893,903	-				+1.4
4,893,904	+				-1.1
4,893,919	+				-0.9
4,893,919	+				-0.7
4,893,919	+				-1.7
4,893,919	+				-0.3
4,893,919	+				+0.1
4,893,927	-				-1.5
4,893,927	-				-1.2
4,893,934	+				-0.3
4,893,934	+				-0.1
4,893,934	+				-0.8
4,893,934	-				-1.2
4,893,942	-				-0.4
4,893,942	-				+0.7
4,893,942	-				-0.8
4,893,947	-				+0.9
4,893,949	+				+0.4
4,893,949	-				-1.9
4,893,957	-				-1.0
4,893,959	+				-0.6
4,893,959	+				-1.0
4,893,959	+				-1.9
4,893,967	-				-1.8
4,893,967	-				-0.2
4,893,981	+				-0.9
4,893,984	-				-2.6
4,893,986	-				-1.7
4,893,989	-				-0.1
4,893,993	+				-1.4
4,893,998	+				-2.0
4,894,001	+				-1.0
4,894,001	+				+0.0
4,894,001	+				-1.4
4,894,001	+				-1.9
4,894,001	-				-1.6
4,894,001	-				+0.2
4,894,006	+				-1.3
4,894,009	-				+1.4
4,894,009	-				-1.0
4,894,073	+		GFF4903	0.11	-1.2
4,894,073	+		GFF4903	0.11	-2.0
4,894,078	+		GFF4903	0.12	-0.8
4,894,086	-		GFF4903	0.12	-1.9
4,894,086	-		GFF4903	0.12	-0.0
4,894,118	+		GFF4903	0.14	-0.1
4,894,126	+		GFF4903	0.15	-0.9
4,894,128	-		GFF4903	0.15	-0.7
4,894,128	-		GFF4903	0.15	+0.9
4,894,130	+		GFF4903	0.15	+0.3
4,894,130	+		GFF4903	0.15	-0.2
4,894,130	+		GFF4903	0.15	+0.5
4,894,130	+		GFF4903	0.15	-0.6
4,894,130	+		GFF4903	0.15	-0.5
4,894,134	-		GFF4903	0.15	-0.5
4,894,134	-		GFF4903	0.15	-1.6
4,894,136	+		GFF4903	0.15	-1.7
4,894,136	+		GFF4903	0.15	+1.3
4,894,142	+		GFF4903	0.16	+0.1
4,894,142	+		GFF4903	0.16	-1.8
4,894,142	+		GFF4903	0.16	+0.5
4,894,144	-		GFF4903	0.16	-0.4
4,894,144	-		GFF4903	0.16	-2.9
4,894,150	-		GFF4903	0.16	-0.3
4,894,150	-		GFF4903	0.16	-0.3
4,894,150	-		GFF4903	0.16	-0.8
4,894,150	-		GFF4903	0.16	-1.4
4,894,150	-		GFF4903	0.16	-0.9
4,894,150	-		GFF4903	0.16	+0.2
4,894,150	-		GFF4903	0.16	-2.2
4,894,150	-		GFF4903	0.16	+0.5
4,894,152	+		GFF4903	0.16	-0.6
4,894,152	+		GFF4903	0.16	-1.6
4,894,152	+		GFF4903	0.16	-0.9
4,894,152	+		GFF4903	0.16	-1.6
4,894,152	+		GFF4903	0.16	-0.7
4,894,160	-		GFF4903	0.17	-0.4
4,894,160	-		GFF4903	0.17	+0.3
4,894,160	-		GFF4903	0.17	-0.8
4,894,160	-		GFF4903	0.17	+0.1
4,894,160	-		GFF4903	0.17	-0.7
4,894,161	-		GFF4903	0.17	-0.6
4,894,165	-		GFF4903	0.17	+0.8
4,894,221	-		GFF4903	0.20	-0.3
4,894,223	+		GFF4903	0.20	-0.1
4,894,223	+		GFF4903	0.20	-2.8
4,894,223	+		GFF4903	0.20	-0.0
4,894,223	+		GFF4903	0.20	-0.5
4,894,223	+		GFF4903	0.20	-1.8
4,894,223	+		GFF4903	0.20	+0.6
4,894,223	+		GFF4903	0.20	-0.5
4,894,228	+		GFF4903	0.21	-1.0
4,894,231	-		GFF4903	0.21	-1.6
4,894,231	-		GFF4903	0.21	-0.8
4,894,231	-		GFF4903	0.21	-1.5
4,894,236	-		GFF4903	0.21	-0.6
4,894,236	-		GFF4903	0.21	-0.9
4,894,236	-		GFF4903	0.21	-0.2
4,894,236	-		GFF4903	0.21	-1.1
4,894,244	+		GFF4903	0.22	-1.2
4,894,244	+		GFF4903	0.22	-0.3
4,894,244	+		GFF4903	0.22	+0.2
4,894,249	+		GFF4903	0.22	-0.7
4,894,249	+		GFF4903	0.22	+0.5
4,894,257	-		GFF4903	0.22	-0.9
4,894,278	+		GFF4903	0.24	+0.3
4,894,278	+		GFF4903	0.24	-0.1
4,894,278	+		GFF4903	0.24	-2.0
4,894,286	-		GFF4903	0.24	-1.8
4,894,286	-		GFF4903	0.24	+0.1
4,894,292	-		GFF4903	0.24	+2.1
4,894,303	-		GFF4903	0.25	-0.6
4,894,338	+		GFF4903	0.27	-1.9
4,894,339	-		GFF4903	0.27	-2.2
4,894,339	-		GFF4903	0.27	-0.9
4,894,340	-		GFF4903	0.27	-1.0
4,894,387	+		GFF4903	0.30	-0.8
4,894,400	-		GFF4903	0.31	+0.4
4,894,460	+		GFF4903	0.34	-1.4
4,894,460	+		GFF4903	0.34	-0.6
4,894,468	-		GFF4903	0.35	-1.2
4,894,493	+		GFF4903	0.36	-0.2
4,894,500	+		GFF4903	0.37	-2.0
4,894,500	+		GFF4903	0.37	+0.4
4,894,500	+		GFF4903	0.37	-0.7
4,894,501	-		GFF4903	0.37	-0.5
4,894,501	-		GFF4903	0.37	+0.5
4,894,508	-		GFF4903	0.37	-0.8
4,894,508	-		GFF4903	0.37	-1.0
4,894,508	-		GFF4903	0.37	-2.6
4,894,529	+		GFF4903	0.39	-1.5
4,894,529	+		GFF4903	0.39	+0.1
4,894,529	+		GFF4903	0.39	-2.1
4,894,537	-		GFF4903	0.39	-1.1
4,894,537	-		GFF4903	0.39	+0.3
4,894,537	-		GFF4903	0.39	-1.6
4,894,543	+		GFF4903	0.39	-0.6
4,894,543	+		GFF4903	0.39	-1.6
4,894,546	-		GFF4903	0.40	-2.0
4,894,546	-		GFF4903	0.40	-0.3
4,894,550	+		GFF4903	0.40	-0.6
4,894,556	+		GFF4903	0.40	-1.3
4,894,585	+		GFF4903	0.42	-0.3
4,894,585	+		GFF4903	0.42	-2.0
4,894,585	+		GFF4903	0.42	+0.7
4,894,586	+		GFF4903	0.42	-1.8
4,894,593	-		GFF4903	0.42	-1.8
4,894,593	-		GFF4903	0.42	-1.1
4,894,593	-		GFF4903	0.42	-0.1
4,894,594	+		GFF4903	0.42	-0.0
4,894,602	-		GFF4903	0.43	-1.0
4,894,602	-		GFF4903	0.43	-0.9
4,894,604	+		GFF4903	0.43	+0.3
4,894,604	+		GFF4903	0.43	-0.9
4,894,604	+		GFF4903	0.43	+1.0
4,894,604	+		GFF4903	0.43	+1.4
4,894,604	+		GFF4903	0.43	-1.2
4,894,604	+		GFF4903	0.43	-0.5
4,894,604	+		GFF4903	0.43	+0.4
4,894,604	+		GFF4903	0.43	-0.8
4,894,604	+		GFF4903	0.43	-2.8
4,894,604	+		GFF4903	0.43	-0.5
4,894,604	+		GFF4903	0.43	+0.6
4,894,612	-		GFF4903	0.44	+0.8
4,894,612	-		GFF4903	0.44	-1.4
4,894,612	-		GFF4903	0.44	-0.6
4,894,612	-		GFF4903	0.44	-0.5
4,894,612	-		GFF4903	0.44	-0.2
4,894,612	-		GFF4903	0.44	-0.0
4,894,612	-		GFF4903	0.44	+0.0
4,894,612	-		GFF4903	0.44	+0.4
4,894,628	-		GFF4903	0.44	-0.6
4,894,630	+		GFF4903	0.45	+0.1
4,894,630	+		GFF4903	0.45	-0.3
4,894,630	+		GFF4903	0.45	-0.6
4,894,630	+		GFF4903	0.45	-0.8
4,894,631	-		GFF4903	0.45	-0.1
4,894,638	-		GFF4903	0.45	-0.0
4,894,638	-		GFF4903	0.45	-0.1
4,894,638	-		GFF4903	0.45	+0.3
4,894,640	-		GFF4903	0.45	-0.1
4,894,659	+		GFF4903	0.46	-1.1
4,894,665	+		GFF4903	0.47	-1.8
4,894,665	+		GFF4903	0.47	-0.7
4,894,673	-		GFF4903	0.47	-0.5
4,894,673	-		GFF4903	0.47	+1.0
4,894,698	-		GFF4903	0.49	-0.4
4,894,720	-		GFF4903	0.50	-0.8
4,894,812	+		GFF4903	0.55	+0.0
4,894,825	+		GFF4903	0.56	-1.0
4,894,833	-		GFF4903	0.57	-1.6
4,894,852	+		GFF4903	0.58	-2.1
4,894,857	+		GFF4903	0.58	+0.5
4,894,865	-		GFF4903	0.59	-0.2
4,894,887	+		GFF4903	0.60	-0.2
4,894,887	+		GFF4903	0.60	-0.9
4,894,894	+		GFF4903	0.60	-1.6
4,894,894	+		GFF4903	0.60	-0.5
4,894,894	+		GFF4903	0.60	-1.2
4,894,894	+		GFF4903	0.60	-0.7
4,894,894	+		GFF4903	0.60	+0.4
4,894,894	+		GFF4903	0.60	-0.6
4,894,894	+		GFF4903	0.60	+0.3
4,894,894	+		GFF4903	0.60	-1.6
4,894,894	+		GFF4903	0.60	-0.8
4,894,894	+		GFF4903	0.60	-0.6
4,894,895	-		GFF4903	0.60	+0.1
4,894,902	-		GFF4903	0.61	-1.1
4,894,902	-		GFF4903	0.61	-0.1
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4,894,902	-		GFF4903	0.61	-1.1
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4,895,017	+		GFF4903	0.68	-0.4
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4,895,044	+		GFF4903	0.69	-0.1
4,895,044	-		GFF4903	0.69	+1.3
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4,895,082	+		GFF4903	0.72	-2.4
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4,895,083	+		GFF4903	0.72	-0.7
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4,895,105	-		GFF4903	0.73	-0.3
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4,895,141	-		GFF4903	0.75	-0.8
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4,895,183	+		GFF4903	0.78	-0.0
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4,895,183	+		GFF4903	0.78	+0.6
4,895,183	+		GFF4903	0.78	+0.0
4,895,183	+		GFF4903	0.78	-1.7
4,895,183	+		GFF4903	0.78	-0.2
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4,895,191	-		GFF4903	0.78	-0.7
4,895,191	-		GFF4903	0.78	+1.2
4,895,191	-		GFF4903	0.78	+0.2
4,895,191	-		GFF4903	0.78	-0.3
4,895,191	-		GFF4903	0.78	-0.5
4,895,191	-		GFF4903	0.78	-1.9
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4,895,204	+		GFF4903	0.79	-1.3
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4,895,213	+		GFF4903	0.79	-2.3
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4,895,238	-		GFF4903	0.81	-2.3
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4,895,283	-		GFF4903	0.84	-0.3
4,895,287	+		GFF4903	0.84	-2.0
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4,895,316	+		GFF4903	0.86	-1.0
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4,895,340	+		GFF4903	0.87	-2.4
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4,895,343	-		GFF4903	0.87	-0.8
4,895,345	+		GFF4903	0.87	+0.3
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4,895,356	+		GFF4903	0.88	-0.7
4,895,374	+		GFF4903	0.89	-3.1
4,895,374	+		GFF4903	0.89	+1.4
4,895,374	+		GFF4903	0.89	-0.4
4,895,374	+		GFF4903	0.89	-1.1
4,895,379	+		GFF4903	0.89	-1.4
4,895,379	+		GFF4903	0.89	-0.9
4,895,382	-		GFF4903	0.89	-1.6
4,895,382	-		GFF4903	0.89	-0.1
4,895,387	-		GFF4903	0.90	-1.9
4,895,404	+				+0.1
4,895,404	+				-0.4
4,895,431	+				-1.1
4,895,455	+				-0.8
4,895,455	+				-0.9
4,895,455	+				-2.3
4,895,455	+				-0.6
4,895,455	+				-0.5
4,895,455	+				-1.7
4,895,455	+				-0.8
4,895,455	+				-2.6
4,895,455	+				+0.1
4,895,455	+				-0.5
4,895,455	+				-0.2
4,895,459	+				-1.9
4,895,463	-				-1.3
4,895,463	-				+0.5
4,895,463	-				-2.5
4,895,463	-				-1.8
4,895,463	-				-2.5
4,895,463	-				+0.7
4,895,463	-				-0.8
4,895,463	-				-1.3
4,895,463	-				-0.9
4,895,463	-				-0.2
4,895,463	-				-1.0
4,895,463	-				-0.7
4,895,463	-				+0.5
4,895,463	-				-0.6
4,895,465	+				-0.5
4,895,474	+				-1.2
4,895,480	+				-0.1
4,895,484	+				-0.6
4,895,500	+				-0.9
4,895,501	+				-0.8
4,895,507	+				+0.1
4,895,510	-				-3.0
4,895,516	-				-0.7
4,895,520	+				-0.5
4,895,531	+				-2.2
4,895,542	+				-1.6
4,895,554	+				-2.3
4,895,562	-				-1.6
4,895,590	+				+0.7
4,895,598	-				+0.0
4,895,651	-				+0.9
4,895,664	+		GFF4904	0.10	-0.1
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4,895,709	-		GFF4904	0.15	-2.1
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4,895,772	+		GFF4904	0.21	-0.7
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4,895,780	-		GFF4904	0.22	-2.0
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4,895,780	-		GFF4904	0.22	-1.3
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