Strain Fitness in Sphingobium sp. HT1-2 around GFF4892

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,883,901	-		GFF4891	0.60	-0.3
4,883,904	-		GFF4891	0.60	-0.7
4,883,919	-		GFF4891	0.60	-0.1
4,883,927	-		GFF4891	0.61	-0.6
4,883,929	+		GFF4891	0.61	-0.7
4,883,929	+		GFF4891	0.61	+0.6
4,883,929	+		GFF4891	0.61	-0.1
4,883,929	+		GFF4891	0.61	+0.1
4,883,937	-		GFF4891	0.61	+0.5
4,883,937	-		GFF4891	0.61	-0.5
4,883,937	-		GFF4891	0.61	-0.3
4,883,939	+		GFF4891	0.61	+0.7
4,883,964	+		GFF4891	0.63	+0.1
4,883,970	+		GFF4891	0.63	+0.0
4,883,980	-		GFF4891	0.64	-1.1
4,884,000	+		GFF4891	0.65	-0.4
4,884,005	+		GFF4891	0.65	-0.9
4,884,012	+		GFF4891	0.65	-0.5
4,884,012	+		GFF4891	0.65	+0.2
4,884,013	-		GFF4891	0.65	-2.0
4,884,014	-		GFF4891	0.65	+0.6
4,884,102	+		GFF4891	0.70	+0.5
4,884,102	+		GFF4891	0.70	-1.1
4,884,102	+		GFF4891	0.70	+0.0
4,884,102	+		GFF4891	0.70	-1.6
4,884,102	+		GFF4891	0.70	-0.5
4,884,102	+		GFF4891	0.70	+0.6
4,884,102	+		GFF4891	0.70	+0.3
4,884,102	+		GFF4891	0.70	+0.0
4,884,102	+		GFF4891	0.70	+0.5
4,884,102	+		GFF4891	0.70	-0.5
4,884,102	+		GFF4891	0.70	+1.3
4,884,102	+		GFF4891	0.70	-0.7
4,884,104	+		GFF4891	0.70	-0.3
4,884,110	-		GFF4891	0.70	-0.4
4,884,110	-		GFF4891	0.70	+0.7
4,884,110	-		GFF4891	0.70	-0.3
4,884,110	-		GFF4891	0.70	-0.1
4,884,110	-		GFF4891	0.70	-0.5
4,884,110	-		GFF4891	0.70	-0.6
4,884,110	-		GFF4891	0.70	-0.0
4,884,110	-		GFF4891	0.70	+0.8
4,884,110	-		GFF4891	0.70	+0.2
4,884,110	-		GFF4891	0.70	-1.8
4,884,110	-		GFF4891	0.70	-0.6
4,884,110	-		GFF4891	0.70	-0.8
4,884,110	-		GFF4891	0.70	-0.4
4,884,110	-		GFF4891	0.70	-0.1
4,884,110	-		GFF4891	0.70	-0.6
4,884,110	-		GFF4891	0.70	-1.3
4,884,110	-		GFF4891	0.70	-1.0
4,884,110	-		GFF4891	0.70	+0.3
4,884,110	-		GFF4891	0.70	+0.5
4,884,110	-		GFF4891	0.70	+0.0
4,884,110	-		GFF4891	0.70	-0.5
4,884,112	+		GFF4891	0.70	+0.2
4,884,112	-		GFF4891	0.70	-1.7
4,884,112	-		GFF4891	0.70	-0.3
4,884,112	-		GFF4891	0.70	+0.1
4,884,112	-		GFF4891	0.70	-0.4
4,884,112	-		GFF4891	0.70	-0.7
4,884,118	-		GFF4891	0.71	-0.1
4,884,118	-		GFF4891	0.71	+1.0
4,884,120	-		GFF4891	0.71	+1.3
4,884,125	-		GFF4891	0.71	+0.1
4,884,130	-		GFF4891	0.71	-0.6
4,884,143	+		GFF4891	0.72	+0.4
4,884,143	+		GFF4891	0.72	-0.7
4,884,143	+		GFF4891	0.72	-0.5
4,884,143	+		GFF4891	0.72	-1.7
4,884,143	+		GFF4891	0.72	+0.6
4,884,143	+		GFF4891	0.72	-1.8
4,884,143	+		GFF4891	0.72	-1.1
4,884,148	+		GFF4891	0.72	+0.0
4,884,148	+		GFF4891	0.72	+1.3
4,884,148	+		GFF4891	0.72	-1.5
4,884,148	+		GFF4891	0.72	-1.4
4,884,151	-		GFF4891	0.72	+1.0
4,884,151	-		GFF4891	0.72	-1.8
4,884,151	-		GFF4891	0.72	-1.8
4,884,151	-		GFF4891	0.72	-2.1
4,884,151	-		GFF4891	0.72	+0.8
4,884,151	-		GFF4891	0.72	+1.6
4,884,151	-		GFF4891	0.72	-0.1
4,884,151	-		GFF4891	0.72	-0.2
4,884,153	+		GFF4891	0.73	-0.8
4,884,153	+		GFF4891	0.73	-0.5
4,884,156	-		GFF4891	0.73	-0.5
4,884,156	-		GFF4891	0.73	-2.6
4,884,158	+		GFF4891	0.73	-2.2
4,884,158	+		GFF4891	0.73	-2.2
4,884,161	-		GFF4891	0.73	+0.4
4,884,166	-		GFF4891	0.73	-1.4
4,884,168	+		GFF4891	0.73	-0.6
4,884,168	+		GFF4891	0.73	-0.3
4,884,168	+		GFF4891	0.73	-1.7
4,884,168	+		GFF4891	0.73	-0.2
4,884,168	+		GFF4891	0.73	-0.3
4,884,168	+		GFF4891	0.73	+0.8
4,884,168	+		GFF4891	0.73	-0.8
4,884,168	+		GFF4891	0.73	-2.2
4,884,176	-		GFF4891	0.74	-1.0
4,884,176	-		GFF4891	0.74	-1.2
4,884,176	-		GFF4891	0.74	-1.7
4,884,176	-		GFF4891	0.74	+0.3
4,884,197	+		GFF4891	0.75	+0.5
4,884,197	+		GFF4891	0.75	-0.5
4,884,220	+		GFF4891	0.76	-0.1
4,884,222	+		GFF4891	0.76	-0.8
4,884,222	-		GFF4891	0.76	-2.2
4,884,224	+		GFF4891	0.76	+1.9
4,884,247	+		GFF4891	0.77	+0.6
4,884,252	+		GFF4891	0.78	-1.8
4,884,257	+		GFF4891	0.78	-1.3
4,884,261	+		GFF4891	0.78	+0.0
4,884,286	+		GFF4891	0.79	-0.5
4,884,304	+		GFF4891	0.80	-0.5
4,884,304	+		GFF4891	0.80	-0.3
4,884,304	+		GFF4891	0.80	-0.5
4,884,304	+		GFF4891	0.80	+1.1
4,884,304	+		GFF4891	0.80	-0.1
4,884,304	+		GFF4891	0.80	+1.3
4,884,312	-		GFF4891	0.81	+0.6
4,884,312	-		GFF4891	0.81	+0.3
4,884,314	+		GFF4891	0.81	+0.9
4,884,315	+		GFF4891	0.81	+0.2
4,884,315	+		GFF4891	0.81	+0.2
4,884,315	+		GFF4891	0.81	-0.7
4,884,315	+		GFF4891	0.81	-0.4
4,884,317	+		GFF4891	0.81	-0.9
4,884,322	+		GFF4891	0.81	-1.0
4,884,323	-		GFF4891	0.81	+1.2
4,884,327	+		GFF4891	0.82	+1.2
4,884,333	+		GFF4891	0.82	+0.3
4,884,340	-		GFF4891	0.82	-0.2
4,884,353	-		GFF4891	0.83	-0.2
4,884,375	+		GFF4891	0.84	+1.3
4,884,380	+		GFF4891	0.84	+0.6
4,884,388	-		GFF4891	0.85	+0.3
4,884,405	+		GFF4891	0.86	-0.3
4,884,413	+		GFF4891	0.86	+0.3
4,884,413	-		GFF4891	0.86	-0.5
4,884,413	-		GFF4891	0.86	-0.4
4,884,414	+		GFF4891	0.86	-1.4
4,884,424	+		GFF4891	0.87	+0.0
4,884,432	-		GFF4891	0.87	-0.3
4,884,466	+		GFF4891	0.89	-1.3
4,884,467	-		GFF4891	0.89	+0.2
4,884,472	-		GFF4891	0.89	+0.2
4,884,474	-		GFF4891	0.89	+0.4
4,884,485	+		GFF4891	0.90	-0.4
4,884,490	+				+0.5
4,884,490	+				-0.1
4,884,493	-				+0.8
4,884,497	+				+0.6
4,884,497	+				-0.9
4,884,498	-				+0.2
4,884,525	+				-2.2
4,884,525	+				-0.9
4,884,530	+				-1.7
4,884,530	+				-0.1
4,884,530	-				+0.5
4,884,533	-				+0.9
4,884,535	+				+0.9
4,884,535	+				-0.2
4,884,535	+				+0.4
4,884,538	-				+0.3
4,884,538	-				+1.0
4,884,543	-				+0.1
4,884,574	+				+0.2
4,884,575	-				+0.0
4,884,575	-				-1.3
4,884,584	+				+0.8
4,884,589	+				-1.7
4,884,590	+				-0.6
4,884,602	-				+0.1
4,884,617	+				+1.1
4,884,617	+				+0.0
4,884,619	+				-0.9
4,884,623	+				-1.2
4,884,624	+				-0.5
4,884,625	+				+0.3
4,884,632	-				-1.4
4,884,639	+				+0.5
4,884,658	-				+0.3
4,884,658	-				-1.1
4,884,687	-				-0.7
4,884,708	+				-0.1
4,884,742	-				-0.7
4,884,758	-				+1.2
4,884,773	+				+0.5
4,884,797	+				-1.5
4,884,802	+				-1.9
4,884,805	-				+0.2
4,884,813	-				+0.7
4,884,857	-				-0.5
4,884,888	-				+0.1
4,884,891	+				-1.0
4,884,891	+				-0.9
4,884,891	+				+0.1
4,884,891	+				-0.3
4,884,899	-				+0.2
4,884,899	-				+1.3
4,884,899	-				+0.3
4,884,936	-				-0.4
4,884,944	-				-0.3
4,884,945	+				-0.7
4,884,946	+				-1.1
4,884,946	+				-1.6
4,884,969	+				+0.2
4,884,981	+		GFF4892	0.11	+0.4
4,884,989	-		GFF4892	0.12	-0.9
4,884,989	-		GFF4892	0.12	-0.3
4,885,008	+		GFF4892	0.15	+0.5
4,885,037	+		GFF4892	0.19	+0.1
4,885,037	+		GFF4892	0.19	-1.8
4,885,037	+		GFF4892	0.19	+0.6
4,885,037	+		GFF4892	0.19	-1.7
4,885,042	+		GFF4892	0.19	+0.2
4,885,045	-		GFF4892	0.20	-0.8
4,885,045	-		GFF4892	0.20	-0.3
4,885,045	-		GFF4892	0.20	+0.2
4,885,046	+		GFF4892	0.20	-0.1
4,885,050	-		GFF4892	0.20	-1.1
4,885,056	+		GFF4892	0.21	-0.6
4,885,058	+		GFF4892	0.21	-2.3
4,885,058	+		GFF4892	0.21	-0.1
4,885,059	-		GFF4892	0.21	-0.9
4,885,064	-		GFF4892	0.22	-0.9
4,885,064	-		GFF4892	0.22	+1.5
4,885,066	-		GFF4892	0.22	-1.3
4,885,119	+		GFF4892	0.29	-0.5
4,885,119	+		GFF4892	0.29	-1.3
4,885,119	+		GFF4892	0.29	+0.2
4,885,119	+		GFF4892	0.29	-1.0
4,885,119	+		GFF4892	0.29	-0.5
4,885,119	+		GFF4892	0.29	+0.8
4,885,119	+		GFF4892	0.29	+0.2
4,885,125	-		GFF4892	0.30	+0.1
4,885,127	-		GFF4892	0.30	-1.5
4,885,127	-		GFF4892	0.30	-0.2
4,885,127	-		GFF4892	0.30	-1.4
4,885,127	-		GFF4892	0.30	+0.5
4,885,127	-		GFF4892	0.30	-0.2
4,885,127	-		GFF4892	0.30	-0.7
4,885,127	-		GFF4892	0.30	+0.1
4,885,127	-		GFF4892	0.30	-1.3
4,885,127	-		GFF4892	0.30	-0.7
4,885,127	-		GFF4892	0.30	-1.4
4,885,127	-		GFF4892	0.30	-0.5
4,885,127	-		GFF4892	0.30	-1.5
4,885,129	+		GFF4892	0.30	-2.0
4,885,131	+		GFF4892	0.31	-0.8
4,885,131	+		GFF4892	0.31	-0.8
4,885,131	+		GFF4892	0.31	-1.8
4,885,137	-		GFF4892	0.32	+0.5
4,885,137	-		GFF4892	0.32	-0.2
4,885,139	+		GFF4892	0.32	+0.3
4,885,139	-		GFF4892	0.32	-0.7
4,885,147	-		GFF4892	0.33	+0.1
4,885,155	+		GFF4892	0.34	+0.1
4,885,175	+		GFF4892	0.36	+0.2
4,885,183	-		GFF4892	0.37	-0.9
4,885,184	-		GFF4892	0.38	-1.3
4,885,187	-		GFF4892	0.38	-1.1
4,885,187	-		GFF4892	0.38	+0.1
4,885,191	+		GFF4892	0.39	-0.3
4,885,191	+		GFF4892	0.39	-0.0
4,885,191	+		GFF4892	0.39	-1.5
4,885,191	+		GFF4892	0.39	-1.1
4,885,191	+		GFF4892	0.39	-0.5
4,885,191	+		GFF4892	0.39	-0.8
4,885,191	+		GFF4892	0.39	-1.1
4,885,191	+		GFF4892	0.39	+0.8
4,885,193	+		GFF4892	0.39	+0.5
4,885,199	-		GFF4892	0.40	-0.9
4,885,199	-		GFF4892	0.40	-0.3
4,885,199	-		GFF4892	0.40	-0.8
4,885,199	-		GFF4892	0.40	-1.0
4,885,199	-		GFF4892	0.40	+0.2
4,885,199	-		GFF4892	0.40	-1.6
4,885,201	-		GFF4892	0.40	-1.7
4,885,201	-		GFF4892	0.40	-0.1
4,885,208	-		GFF4892	0.41	+0.7
4,885,243	+		GFF4892	0.45	-0.7
4,885,246	-		GFF4892	0.46	-1.5
4,885,246	-		GFF4892	0.46	-0.1
4,885,249	+		GFF4892	0.46	-0.2
4,885,261	+		GFF4892	0.48	-0.3
4,885,262	-		GFF4892	0.48	-0.4
4,885,269	-		GFF4892	0.49	-0.9
4,885,273	+		GFF4892	0.49	+0.7
4,885,297	+		GFF4892	0.52	+0.1
4,885,299	-		GFF4892	0.53	+0.7
4,885,299	-		GFF4892	0.53	-0.0
4,885,305	-		GFF4892	0.53	-0.1
4,885,305	-		GFF4892	0.53	+0.3
4,885,317	+		GFF4892	0.55	+0.7
4,885,337	-		GFF4892	0.57	-1.5
4,885,346	-		GFF4892	0.59	-1.1
4,885,356	+		GFF4892	0.60	-0.1
4,885,356	+		GFF4892	0.60	+1.0
4,885,361	+		GFF4892	0.61	-0.7
4,885,364	-		GFF4892	0.61	-0.9
4,885,364	-		GFF4892	0.61	+0.2
4,885,369	-		GFF4892	0.62	-1.9
4,885,383	+		GFF4892	0.63	-0.9
4,885,383	+		GFF4892	0.63	-0.5
4,885,391	-		GFF4892	0.64	+0.0
4,885,391	-		GFF4892	0.64	+0.2
4,885,391	-		GFF4892	0.64	+0.3
4,885,392	-		GFF4892	0.65	-0.0
4,885,396	-		GFF4892	0.65	+0.8
4,885,399	+		GFF4892	0.65	+1.2
4,885,399	+		GFF4892	0.65	-2.2
4,885,400	+		GFF4892	0.66	-1.5
4,885,407	-		GFF4892	0.67	-1.2
4,885,408	-		GFF4892	0.67	-1.0
4,885,408	-		GFF4892	0.67	+0.5
4,885,408	-		GFF4892	0.67	-0.8
4,885,408	-		GFF4892	0.67	-1.5
4,885,416	+		GFF4892	0.68	-0.2
4,885,437	+		GFF4892	0.70	-0.8
4,885,445	-		GFF4892	0.71	+0.3
4,885,455	+		GFF4892	0.73	-1.1
4,885,473	-		GFF4892	0.75	-1.9
4,885,495	-		GFF4892	0.78	-0.5
4,885,507	-		GFF4892	0.80	-0.5
4,885,577	+		GFF4892	0.89	-0.8
4,885,584	+		GFF4892	0.89	-0.5
4,885,585	-		GFF4892	0.90	+1.0
4,885,585	-		GFF4892	0.90	+0.1
4,885,585	-		GFF4892	0.90	-0.4
4,885,591	+				-0.4
4,885,607	+				-1.4
4,885,607	+				-0.1
4,885,615	-				+0.3
4,885,617	-				-1.1
4,885,617	-				+0.3
4,885,628	+				+0.9
4,885,648	-				+0.1
4,885,665	+				-1.9
4,885,670	+				-0.2
4,885,670	+				-0.2
4,885,678	-				-1.4
4,885,701	+				-1.5
4,885,701	+				+0.4
4,885,701	+				+0.4
4,885,724	+				-0.6
4,885,742	+				-0.5
4,885,742	-				-1.4
4,885,744	+				-2.8
4,885,752	-				-0.5
4,885,752	-				+0.2
4,885,752	-				+0.5
4,885,753	-				+0.5
4,885,761	+				+0.3
4,885,820	-				+1.5
4,885,823	+				-0.0
4,885,894	+				+0.2
4,885,938	-				-0.3
4,885,968	-		GFF4893	0.12	-0.4
4,885,975	+		GFF4893	0.12	+1.4
4,885,987	+		GFF4893	0.14	-2.0
4,885,996	+		GFF4893	0.15	-0.8
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4,886,643	+		GFF4893	0.89	-0.7
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4,886,651	-				+0.4
4,886,652	+				+0.9
4,886,653	+				+0.5
4,886,658	-				+1.1
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