Strain Fitness in Sphingobium sp. HT1-2 around GFF4885

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,873,713	-				-0.2
4,873,716	+				+0.7
4,873,734	+				-0.1
4,873,737	-				-0.9
4,873,742	-				-1.0
4,873,756	-				+0.0
4,873,762	-				-2.3
4,873,776	-		GFF4884	0.12	-1.5
4,873,777	-		GFF4884	0.12	-0.2
4,873,784	+		GFF4884	0.13	-1.5
4,873,800	+		GFF4884	0.15	-2.3
4,873,842	-		GFF4884	0.20	-0.4
4,873,856	+		GFF4884	0.22	-0.1
4,873,869	-		GFF4884	0.24	-1.0
4,873,891	-		GFF4884	0.26	-0.7
4,873,893	+		GFF4884	0.27	+0.3
4,873,902	+		GFF4884	0.28	-0.2
4,873,905	-		GFF4884	0.28	-1.5
4,873,909	+		GFF4884	0.29	+0.9
4,873,924	+		GFF4884	0.31	-0.5
4,873,953	+		GFF4884	0.34	-0.4
4,873,953	+		GFF4884	0.34	-1.3
4,873,961	-		GFF4884	0.35	+0.8
4,873,961	-		GFF4884	0.35	-0.6
4,873,961	-		GFF4884	0.35	-0.2
4,873,994	+		GFF4884	0.40	-0.8
4,873,994	+		GFF4884	0.40	+0.1
4,874,002	+		GFF4884	0.41	-0.4
4,874,021	+		GFF4884	0.43	-0.7
4,874,021	+		GFF4884	0.43	+0.9
4,874,021	+		GFF4884	0.43	+0.1
4,874,021	+		GFF4884	0.43	-0.9
4,874,026	+		GFF4884	0.44	-1.8
4,874,029	-		GFF4884	0.44	-1.1
4,874,030	+		GFF4884	0.44	-1.6
4,874,031	+		GFF4884	0.44	-0.6
4,874,034	-		GFF4884	0.45	-0.3
4,874,034	-		GFF4884	0.45	-1.6
4,874,047	+		GFF4884	0.46	-2.1
4,874,096	+		GFF4884	0.53	-1.2
4,874,107	+		GFF4884	0.54	-2.6
4,874,127	+		GFF4884	0.57	+2.2
4,874,127	+		GFF4884	0.57	-1.5
4,874,135	-		GFF4884	0.58	+0.6
4,874,149	+		GFF4884	0.59	-2.1
4,874,154	+		GFF4884	0.60	+0.0
4,874,171	-		GFF4884	0.62	+0.9
4,874,176	+		GFF4884	0.63	+0.3
4,874,193	+		GFF4884	0.65	-0.1
4,874,201	-		GFF4884	0.66	-0.9
4,874,201	-		GFF4884	0.66	-2.0
4,874,201	-		GFF4884	0.66	-0.5
4,874,201	-		GFF4884	0.66	-0.2
4,874,201	-		GFF4884	0.66	-1.6
4,874,201	-		GFF4884	0.66	-2.8
4,874,201	-		GFF4884	0.66	-0.2
4,874,253	+		GFF4884	0.73	+0.3
4,874,295	-		GFF4884	0.78	-0.1
4,874,295	-		GFF4884	0.78	-0.8
4,874,300	-		GFF4884	0.79	-0.8
4,874,300	-		GFF4884	0.79	-0.2
4,874,310	+		GFF4884	0.80	+0.0
4,874,314	+		GFF4884	0.80	+0.9
4,874,314	+		GFF4884	0.80	+0.4
4,874,318	-		GFF4884	0.81	+0.6
4,874,340	+		GFF4884	0.84	+0.9
4,874,340	+		GFF4884	0.84	-0.9
4,874,340	+		GFF4884	0.84	+0.9
4,874,340	+		GFF4884	0.84	-0.3
4,874,340	+		GFF4884	0.84	-0.3
4,874,348	-		GFF4884	0.85	-1.3
4,874,348	-		GFF4884	0.85	-1.1
4,874,375	+		GFF4884	0.88	-0.6
4,874,379	-		GFF4884	0.89	-1.1
4,874,480	-				-0.9
4,874,485	+				-1.3
4,874,485	+				-1.4
4,874,493	-				-1.0
4,874,493	-				-2.0
4,874,568	-				-2.0
4,874,569	+				+0.3
4,874,569	+				-1.6
4,874,569	+				-1.0
4,874,569	+				-0.9
4,874,577	-				-0.4
4,874,577	-				+0.6
4,874,577	-				-0.9
4,874,577	-				-0.8
4,874,577	-				-1.1
4,874,621	+				+0.8
4,874,644	+				-2.3
4,874,664	-				-2.3
4,874,727	-				+0.6
4,874,727	-				+0.0
4,874,760	+		GFF4885	0.13	-1.8
4,874,760	+		GFF4885	0.13	+0.8
4,874,765	+		GFF4885	0.14	+0.3
4,874,773	-		GFF4885	0.15	-0.7
4,874,787	+		GFF4885	0.18	+0.0
4,874,806	-		GFF4885	0.21	+0.5
4,874,856	+		GFF4885	0.30	+0.1
4,874,924	+		GFF4885	0.43	-0.9
4,874,924	+		GFF4885	0.43	-1.7
4,874,934	+		GFF4885	0.44	+0.3
4,874,962	+		GFF4885	0.50	-0.6
4,874,985	+		GFF4885	0.54	+0.3
4,874,985	+		GFF4885	0.54	-0.2
4,874,985	+		GFF4885	0.54	+0.8
4,874,993	-		GFF4885	0.55	+0.3
4,874,993	-		GFF4885	0.55	+0.5
4,875,016	+		GFF4885	0.59	-0.5
4,875,016	+		GFF4885	0.59	+1.4
4,875,046	-		GFF4885	0.65	-1.8
4,875,060	+		GFF4885	0.67	-0.8
4,875,060	+		GFF4885	0.67	-0.9
4,875,067	-		GFF4885	0.69	-2.5
4,875,068	-		GFF4885	0.69	-1.5
4,875,068	-		GFF4885	0.69	+1.1
4,875,068	-		GFF4885	0.69	-1.0
4,875,068	-		GFF4885	0.69	-0.1
4,875,092	+		GFF4885	0.73	-1.7
4,875,092	+		GFF4885	0.73	-0.7
4,875,092	+		GFF4885	0.73	-1.5
4,875,100	-		GFF4885	0.75	-1.3
4,875,100	-		GFF4885	0.75	-1.0
4,875,105	-		GFF4885	0.76	-0.8
4,875,110	+		GFF4885	0.77	+0.0
4,875,110	+		GFF4885	0.77	-0.3
4,875,118	-		GFF4885	0.78	+0.1
4,875,118	-		GFF4885	0.78	-0.0
4,875,118	-		GFF4885	0.78	-1.5
4,875,118	-		GFF4885	0.78	+0.1
4,875,135	+		GFF4885	0.81	-1.0
4,875,135	+		GFF4885	0.81	-0.2
4,875,137	+		GFF4885	0.81	-0.1
4,875,140	+		GFF4885	0.82	+0.1
4,875,143	-		GFF4885	0.83	-2.1
4,875,145	-		GFF4885	0.83	-1.5
4,875,148	-		GFF4885	0.83	-0.3
4,875,157	-		GFF4885	0.85	+0.4
4,875,162	-		GFF4885	0.86	-1.3
4,875,180	+		GFF4885	0.89	+0.7
4,875,228	-				-2.4
4,875,228	-				-2.4
4,875,230	-				-1.9
4,875,232	+				+1.0
4,875,237	+				-0.8
4,875,246	+				-0.2
4,875,246	+				-0.3
4,875,252	+				+0.0
4,875,254	-				-0.8
4,875,260	-				-0.6
4,875,264	-				-1.1
4,875,268	+				-0.3
4,875,268	+				+1.1
4,875,268	+				+0.7
4,875,268	+				-0.7
4,875,273	+				-0.3
4,875,276	-				+1.1
4,875,282	+				+0.5
4,875,282	+				-1.4
4,875,282	+				-0.7
4,875,284	+				-0.2
4,875,290	-				-0.3
4,875,292	+				+0.6
4,875,292	+				-0.0
4,875,292	+				-2.0
4,875,292	+				-1.2
4,875,292	+				-0.9
4,875,292	+				-1.5
4,875,298	-				+0.8
4,875,300	-				-1.1
4,875,300	-				+0.8
4,875,300	-				+1.4
4,875,300	-				+0.1
4,875,300	-				+0.5
4,875,308	+				-0.3
4,875,313	+				+0.7
4,875,313	+				-0.7
4,875,321	-				+1.2
4,875,325	-				-0.2
4,875,342	+				-0.9
4,875,342	+				-0.7
4,875,342	+				-1.1
4,875,345	-				-1.3
4,875,347	+				+0.8
4,875,354	+				+0.4
4,875,355	-				+0.8
4,875,355	-				-0.5
4,875,355	-				-1.2
4,875,355	-				-0.1
4,875,382	-				+1.0
4,875,405	+				-0.8
4,875,412	+				+0.2
4,875,412	+				-0.2
4,875,412	+				-0.5
4,875,412	+				-0.7
4,875,420	-		GFF4886	0.10	-2.3
4,875,420	-		GFF4886	0.10	-0.3
4,875,420	-		GFF4886	0.10	+0.9
4,875,440	+		GFF4886	0.11	-0.2
4,875,450	+		GFF4886	0.12	-0.0
4,875,457	+		GFF4886	0.13	-1.5
4,875,458	-		GFF4886	0.13	-0.6
4,875,458	-		GFF4886	0.13	-1.1
4,875,465	-		GFF4886	0.13	-3.0
4,875,468	+		GFF4886	0.13	-1.1
4,875,502	-		GFF4886	0.16	+0.5
4,875,505	+		GFF4886	0.16	-1.8
4,875,511	+		GFF4886	0.16	-0.1
4,875,512	-		GFF4886	0.16	-1.6
4,875,529	+		GFF4886	0.17	-0.2
4,875,537	-		GFF4886	0.18	+0.2
4,875,537	-		GFF4886	0.18	+0.3
4,875,537	-		GFF4886	0.18	-1.5
4,875,537	-		GFF4886	0.18	+1.3
4,875,602	+		GFF4886	0.22	+0.1
4,875,602	+		GFF4886	0.22	-1.9
4,875,602	+		GFF4886	0.22	+0.4
4,875,602	+		GFF4886	0.22	+0.6
4,875,610	-		GFF4886	0.23	-0.7
4,875,610	-		GFF4886	0.23	-0.2
4,875,622	+		GFF4886	0.24	-0.2
4,875,622	+		GFF4886	0.24	-0.6
4,875,622	+		GFF4886	0.24	-0.9
4,875,622	+		GFF4886	0.24	-0.3
4,875,630	-		GFF4886	0.24	+1.1
4,875,630	-		GFF4886	0.24	+0.2
4,875,630	-		GFF4886	0.24	-1.2
4,875,632	+		GFF4886	0.24	+0.0
4,875,632	+		GFF4886	0.24	+1.2
4,875,637	+		GFF4886	0.25	+1.4
4,875,640	+		GFF4886	0.25	-0.9
4,875,640	-		GFF4886	0.25	-1.9
4,875,640	-		GFF4886	0.25	+0.9
4,875,640	-		GFF4886	0.25	-0.4
4,875,640	-		GFF4886	0.25	-0.5
4,875,640	-		GFF4886	0.25	+0.5
4,875,640	-		GFF4886	0.25	-2.3
4,875,640	-		GFF4886	0.25	-0.7
4,875,641	+		GFF4886	0.25	+0.5
4,875,642	+		GFF4886	0.25	-0.3
4,875,642	+		GFF4886	0.25	-0.1
4,875,642	+		GFF4886	0.25	+1.1
4,875,650	-		GFF4886	0.26	-1.1
4,875,658	+		GFF4886	0.26	-0.6
4,875,661	-		GFF4886	0.26	-0.1
4,875,672	+		GFF4886	0.27	-0.3
4,875,672	+		GFF4886	0.27	-0.7
4,875,672	+		GFF4886	0.27	+0.1
4,875,677	+		GFF4886	0.27	+0.1
4,875,682	+		GFF4886	0.28	+1.1
4,875,682	+		GFF4886	0.28	-0.0
4,875,690	-		GFF4886	0.28	+0.2
4,875,709	+		GFF4886	0.30	-3.0
4,875,736	+		GFF4886	0.32	-0.5
4,875,736	+		GFF4886	0.32	+0.8
4,875,737	-		GFF4886	0.32	-0.4
4,875,744	-		GFF4886	0.32	-0.6
4,875,761	-		GFF4886	0.33	-0.2
4,875,768	+		GFF4886	0.34	-0.4
4,875,768	+		GFF4886	0.34	+0.7
4,875,768	+		GFF4886	0.34	+0.1
4,875,768	+		GFF4886	0.34	-2.1
4,875,768	+		GFF4886	0.34	-2.8
4,875,768	+		GFF4886	0.34	-2.5
4,875,768	+		GFF4886	0.34	-1.7
4,875,768	+		GFF4886	0.34	+0.2
4,875,768	+		GFF4886	0.34	-1.0
4,875,768	+		GFF4886	0.34	-0.9
4,875,768	+		GFF4886	0.34	+0.6
4,875,768	+		GFF4886	0.34	-0.7
4,875,768	+		GFF4886	0.34	-1.9
4,875,768	+		GFF4886	0.34	-0.2
4,875,768	+		GFF4886	0.34	+0.0
4,875,768	+		GFF4886	0.34	-1.2
4,875,768	+		GFF4886	0.34	-0.2
4,875,768	+		GFF4886	0.34	-0.1
4,875,768	+		GFF4886	0.34	-1.1
4,875,768	+		GFF4886	0.34	+0.2
4,875,768	+		GFF4886	0.34	-0.8
4,875,773	+		GFF4886	0.34	-0.7
4,875,773	+		GFF4886	0.34	+0.0
4,875,776	-		GFF4886	0.34	-0.7
4,875,776	-		GFF4886	0.34	-0.2
4,875,776	-		GFF4886	0.34	-1.6
4,875,776	-		GFF4886	0.34	-0.5
4,875,776	-		GFF4886	0.34	+0.7
4,875,776	-		GFF4886	0.34	+0.7
4,875,776	-		GFF4886	0.34	+0.6
4,875,776	-		GFF4886	0.34	-1.4
4,875,776	-		GFF4886	0.34	+0.5
4,875,776	-		GFF4886	0.34	+0.9
4,875,776	-		GFF4886	0.34	-0.6
4,875,776	-		GFF4886	0.34	-0.2
4,875,776	-		GFF4886	0.34	-0.8
4,875,776	-		GFF4886	0.34	-0.4
4,875,776	-		GFF4886	0.34	-0.3
4,875,776	-		GFF4886	0.34	-0.6
4,875,776	-		GFF4886	0.34	-1.4
4,875,776	-		GFF4886	0.34	+0.0
4,875,776	-		GFF4886	0.34	+0.1
4,875,778	+		GFF4886	0.34	-0.3
4,875,778	+		GFF4886	0.34	-0.9
4,875,781	-		GFF4886	0.35	-0.1
4,875,781	-		GFF4886	0.35	-0.1
4,875,781	-		GFF4886	0.35	-2.8
4,875,786	-		GFF4886	0.35	-0.7
4,875,786	-		GFF4886	0.35	+0.8
4,875,786	-		GFF4886	0.35	-1.1
4,875,816	+		GFF4886	0.37	-1.6
4,875,817	-		GFF4886	0.37	+0.2
4,875,818	+		GFF4886	0.37	-0.1
4,875,824	-		GFF4886	0.37	+0.5
4,875,847	-		GFF4886	0.39	+0.1
4,875,857	-		GFF4886	0.40	+0.3
4,875,866	-		GFF4886	0.40	-0.6
4,875,872	-		GFF4886	0.41	-0.7
4,875,872	-		GFF4886	0.41	-1.1
4,875,874	+		GFF4886	0.41	-0.1
4,875,874	+		GFF4886	0.41	+0.1
4,875,874	+		GFF4886	0.41	-1.0
4,875,874	+		GFF4886	0.41	-0.4
4,875,882	-		GFF4886	0.41	+0.5
4,875,882	-		GFF4886	0.41	-1.5
4,875,882	-		GFF4886	0.41	-0.4
4,875,889	+		GFF4886	0.42	+0.5
4,875,896	-		GFF4886	0.42	-2.1
4,875,897	-		GFF4886	0.42	+0.8
4,875,897	-		GFF4886	0.42	-1.3
4,875,907	+		GFF4886	0.43	-1.9
4,875,907	+		GFF4886	0.43	-2.7
4,875,907	+		GFF4886	0.43	+1.2
4,875,907	+		GFF4886	0.43	+0.9
4,875,907	+		GFF4886	0.43	-0.1
4,875,915	-		GFF4886	0.44	+0.1
4,875,915	-		GFF4886	0.44	-1.9
4,875,916	+		GFF4886	0.44	-1.9
4,875,923	-		GFF4886	0.44	-1.8
4,875,928	-		GFF4886	0.45	-1.3
4,875,973	-		GFF4886	0.48	+0.5
4,875,992	+		GFF4886	0.49	-0.1
4,875,999	-		GFF4886	0.49	-0.3
4,876,000	-		GFF4886	0.49	-1.1
4,876,033	-		GFF4886	0.52	-0.8
4,876,038	+		GFF4886	0.52	-0.6
4,876,044	+		GFF4886	0.52	+0.7
4,876,046	-		GFF4886	0.53	+0.4
4,876,052	-		GFF4886	0.53	-2.1
4,876,052	-		GFF4886	0.53	+1.1
4,876,052	-		GFF4886	0.53	+0.8
4,876,052	-		GFF4886	0.53	+0.0
4,876,075	+		GFF4886	0.55	+0.3
4,876,113	-		GFF4886	0.57	-0.8
4,876,122	+		GFF4886	0.58	-0.3
4,876,127	+		GFF4886	0.58	-0.1
4,876,130	-		GFF4886	0.58	+0.7
4,876,130	-		GFF4886	0.58	+0.7
4,876,135	-		GFF4886	0.59	-0.2
4,876,135	-		GFF4886	0.59	-1.5
4,876,135	-		GFF4886	0.59	+0.7
4,876,141	+		GFF4886	0.59	+0.3
4,876,146	+		GFF4886	0.59	-0.5
4,876,149	-		GFF4886	0.60	-1.5
4,876,162	+		GFF4886	0.60	-0.5
4,876,167	+		GFF4886	0.61	-0.9
4,876,172	+		GFF4886	0.61	-1.8
4,876,174	+		GFF4886	0.61	-0.2
4,876,180	-		GFF4886	0.62	-0.3
4,876,187	-		GFF4886	0.62	-0.5
4,876,189	+		GFF4886	0.62	-0.7
4,876,192	-		GFF4886	0.62	-1.7
4,876,194	+		GFF4886	0.63	-0.7
4,876,194	+		GFF4886	0.63	+0.3
4,876,197	-		GFF4886	0.63	-0.4
4,876,204	-		GFF4886	0.63	-2.0
4,876,225	+		GFF4886	0.65	+0.9
4,876,225	+		GFF4886	0.65	-2.4
4,876,225	+		GFF4886	0.65	+1.1
4,876,233	-		GFF4886	0.65	-1.3
4,876,233	-		GFF4886	0.65	-0.1
4,876,233	-		GFF4886	0.65	-0.3