Strain Fitness in Sphingobium sp. HT1-2 around GFF4859

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,844,046	+				+0.2
4,844,046	-				+0.3
4,844,081	-				-2.0
4,844,093	-				+0.3
4,844,095	+				-0.1
4,844,100	+				-0.9
4,844,111	-				-0.8
4,844,162	+				+0.1
4,844,175	+				-1.0
4,844,177	+				+0.3
4,844,189	-				+0.8
4,844,195	-				+0.1
4,844,214	-		GFF4858	0.12	+0.8
4,844,226	+		GFF4858	0.15	+0.1
4,844,226	+		GFF4858	0.15	-1.1
4,844,234	-		GFF4858	0.17	-1.9
4,844,236	+		GFF4858	0.17	+0.8
4,844,239	-		GFF4858	0.18	+0.7
4,844,239	-		GFF4858	0.18	-0.9
4,844,239	-		GFF4858	0.18	-0.3
4,844,263	+		GFF4858	0.24	+1.5
4,844,270	+		GFF4858	0.25	-1.6
4,844,278	-		GFF4858	0.27	-1.4
4,844,278	-		GFF4858	0.27	+1.8
4,844,284	+		GFF4858	0.29	+0.1
4,844,284	+		GFF4858	0.29	-1.3
4,844,292	-		GFF4858	0.31	+0.1
4,844,313	-		GFF4858	0.36	-0.4
4,844,327	-		GFF4858	0.39	+0.1
4,844,330	+		GFF4858	0.40	+0.5
4,844,330	+		GFF4858	0.40	+0.5
4,844,330	+		GFF4858	0.40	+0.9
4,844,337	+		GFF4858	0.42	+1.0
4,844,338	-		GFF4858	0.42	-0.8
4,844,385	+		GFF4858	0.53	+0.3
4,844,393	-		GFF4858	0.55	+0.1
4,844,403	-		GFF4858	0.57	+0.2
4,844,430	+		GFF4858	0.64	+0.2
4,844,438	-		GFF4858	0.66	+0.2
4,844,463	-		GFF4858	0.72	+0.5
4,844,473	+		GFF4858	0.74	+0.0
4,844,507	-		GFF4858	0.83	-0.5
4,844,509	+		GFF4858	0.83	-1.5
4,844,509	+		GFF4858	0.83	+0.7
4,844,509	+		GFF4858	0.83	+0.4
4,844,509	+		GFF4858	0.83	+1.6
4,844,517	-		GFF4858	0.85	-1.4
4,844,517	-		GFF4858	0.85	-0.7
4,844,517	-		GFF4858	0.85	+0.7
4,844,535	+		GFF4858	0.89	-1.0
4,844,540	+				+0.7
4,844,540	+				-0.2
4,844,540	+				+0.3
4,844,548	-				-0.8
4,844,548	-				+0.4
4,844,576	-				-1.7
4,844,631	+				-1.9
4,844,636	+				-0.4
4,844,636	+				+0.3
4,844,636	+				-0.4
4,844,636	+				+0.3
4,844,636	+				-1.5
4,844,636	+				-0.7
4,844,636	+				+0.2
4,844,636	+				-0.1
4,844,636	+				-0.5
4,844,636	+				+0.4
4,844,636	+				+0.7
4,844,638	+				-0.1
4,844,644	-				-0.1
4,844,644	-				+0.5
4,844,644	-				+0.0
4,844,644	-				-0.6
4,844,644	-				-0.1
4,844,650	+				+0.2
4,844,657	+				-1.0
4,844,672	-				+2.0
4,844,683	+				+0.4
4,844,683	+				-0.7
4,844,716	-				+0.3
4,844,718	-				-0.0
4,844,721	+				+0.8
4,844,750	-				-0.7
4,844,752	-				+1.2
4,844,773	-				-1.0
4,844,773	-				-0.5
4,844,782	-				+0.3
4,844,787	+				-0.4
4,844,831	+				-0.2
4,844,851	-				+0.2
4,844,871	-				+1.1
4,844,874	+				-0.2
4,844,874	+				-1.0
4,844,882	-				-2.5
4,844,931	-				-1.5
4,844,936	-				-1.9
4,844,941	-				+0.4
4,844,952	+				+0.5
4,844,958	-				+0.5
4,844,958	-				-0.4
4,844,958	-				-0.8
4,844,958	-				+0.8
4,844,958	-				-0.1
4,844,959	+				+1.5
4,844,959	+				-0.9
4,844,975	+				+0.8
4,844,976	+				-0.6
4,844,978	-				-1.5
4,844,978	-				-0.6
4,844,982	+				+1.1
4,844,982	+				+0.3
4,844,982	+				+1.0
4,844,982	+				+0.4
4,844,982	+				+0.8
4,844,982	+				+1.7
4,844,982	+				-1.1
4,844,982	+				+0.5
4,844,982	+				+0.8
4,844,982	+				-0.5
4,844,982	+				+0.0
4,844,982	+				-1.3
4,844,982	+				+0.8
4,844,982	+				+0.2
4,844,982	+				-1.1
4,844,982	+				+0.6
4,844,982	+				+0.3
4,844,982	+				+0.8
4,844,982	+				-2.3
4,844,982	+				+0.3
4,844,982	+				+0.7
4,844,982	+				+0.6
4,844,982	+				-0.0
4,844,982	+				-1.5
4,844,982	+				-0.8
4,844,982	+				-0.5
4,844,982	+				+1.3
4,844,982	+				+0.2
4,844,982	+				-0.2
4,844,982	+				+0.3
4,844,982	+				+1.0
4,844,982	+				-0.2
4,844,982	+				+0.8
4,844,982	+				-2.1
4,844,982	+				-0.9
4,844,982	+				+1.2
4,844,982	+				+0.0
4,844,982	+				+1.2
4,844,982	+				-0.1
4,844,982	+				-0.4
4,844,983	-				-0.2
4,844,984	-				-0.2
4,844,990	-				-1.2
4,844,990	-				+0.4
4,844,990	-				+0.5
4,844,990	-				+1.1
4,844,990	-				-0.6
4,844,990	-				-0.2
4,844,990	-				+0.0
4,844,990	-				+1.3
4,844,990	-				+1.1
4,844,990	-				-1.3
4,844,990	-				+0.7
4,844,990	-				+1.5
4,844,990	-				-0.3
4,844,990	-				+0.5
4,844,990	-				+0.6
4,844,990	-				+0.8
4,844,990	-				-0.7
4,844,990	-				+0.8
4,844,990	-				-1.0
4,844,990	-				+0.4
4,844,990	-				-0.4
4,844,990	-				-2.0
4,844,990	-				-1.7
4,844,990	-				+1.1
4,844,990	-				+0.2
4,844,990	-				-0.1
4,844,990	-				+0.5
4,844,990	-				+1.4
4,844,990	-				+0.8
4,844,990	-				+0.8
4,844,990	-				-1.9
4,844,990	-				+1.0
4,844,990	-				-1.7
4,844,990	-				-0.1
4,844,990	-				-1.0
4,844,990	-				-0.9
4,844,990	-				-0.1
4,844,990	-				+0.1
4,844,990	-				+0.7
4,844,990	-				+0.9
4,844,990	-				-0.7
4,844,990	-				+0.3
4,844,990	-				+1.2
4,844,990	-				+0.1
4,844,990	-				+0.9
4,844,990	-				+0.7
4,844,990	-				-1.4
4,844,990	-				+0.3
4,844,990	-				-1.9
4,844,990	-				+0.8
4,844,992	+				+0.1
4,844,992	+				+0.5
4,845,000	-				+0.0
4,845,000	-				-1.8
4,845,000	-				-0.1
4,845,000	-				-0.7
4,845,000	-				+0.8
4,845,032	+				+0.6
4,845,032	+				+0.0
4,845,040	-				-0.6
4,845,040	-				-0.5
4,845,040	-				-0.6
4,845,040	-				+0.5
4,845,040	-				+0.6
4,845,041	+				-1.1
4,845,041	+				-0.3
4,845,041	+				+0.9
4,845,041	+				+0.5
4,845,041	+				+0.6
4,845,041	+				+0.7
4,845,041	+				-1.5
4,845,041	+				-0.4
4,845,041	+				-1.0
4,845,041	+				+0.3
4,845,041	+				-2.0
4,845,049	-				+0.5
4,845,049	-				-1.2
4,845,049	-				-0.7
4,845,049	-				-0.3
4,845,049	-				-2.1
4,845,049	-				+0.9
4,845,049	-				+0.4
4,845,049	-				-1.3
4,845,049	-				-0.1
4,845,049	-				-1.3
4,845,049	-				+0.2
4,845,049	-				+0.1
4,845,049	-				+0.8
4,845,049	-				+0.3
4,845,067	+				-0.9
4,845,075	-				+0.5
4,845,098	-				-0.1
4,845,143	-		GFF4859	0.15	+0.0
4,845,152	+		GFF4859	0.16	-1.5
4,845,255	-		GFF4859	0.29	+1.0
4,845,259	+		GFF4859	0.29	+0.8
4,845,267	-		GFF4859	0.30	+1.3
4,845,267	-		GFF4859	0.30	-0.2
4,845,267	-		GFF4859	0.30	+0.5
4,845,323	-		GFF4859	0.38	-1.1
4,845,325	+		GFF4859	0.38	+0.2
4,845,325	+		GFF4859	0.38	-0.1
4,845,328	-		GFF4859	0.38	+0.1
4,845,333	-		GFF4859	0.39	-1.4
4,845,333	-		GFF4859	0.39	-1.8
4,845,333	-		GFF4859	0.39	+0.7
4,845,333	-		GFF4859	0.39	+0.4
4,845,344	+		GFF4859	0.40	-0.8
4,845,354	+		GFF4859	0.42	+1.9
4,845,354	+		GFF4859	0.42	+1.4
4,845,362	-		GFF4859	0.43	+0.7
4,845,364	+		GFF4859	0.43	-0.1
4,845,364	+		GFF4859	0.43	-0.3
4,845,372	-		GFF4859	0.44	-1.1
4,845,372	-		GFF4859	0.44	+0.6
4,845,382	+		GFF4859	0.45	+0.7
4,845,390	-		GFF4859	0.46	-0.2
4,845,390	-		GFF4859	0.46	+0.7
4,845,446	+		GFF4859	0.53	+1.6
4,845,474	+		GFF4859	0.57	-1.9
4,845,479	+		GFF4859	0.57	-0.7
4,845,482	-		GFF4859	0.58	+0.4
4,845,482	-		GFF4859	0.58	+0.1
4,845,482	-		GFF4859	0.58	+0.7
4,845,517	-		GFF4859	0.62	+1.0
4,845,529	+		GFF4859	0.64	-0.6
4,845,534	+		GFF4859	0.64	+0.8
4,845,537	-		GFF4859	0.65	-0.1
4,845,550	+		GFF4859	0.67	+0.2
4,845,555	+		GFF4859	0.67	-1.0
4,845,563	-		GFF4859	0.68	-0.9
4,845,574	-		GFF4859	0.70	-0.3
4,845,597	-		GFF4859	0.73	+0.4
4,845,611	-		GFF4859	0.74	+0.1
4,845,613	+		GFF4859	0.75	+0.8
4,845,621	-		GFF4859	0.76	+1.6
4,845,621	-		GFF4859	0.76	+0.8
4,845,621	-		GFF4859	0.76	+1.3
4,845,659	-		GFF4859	0.80	+0.9
4,845,663	+		GFF4859	0.81	-0.2
4,845,669	-		GFF4859	0.82	-0.1
4,845,669	-		GFF4859	0.82	-0.2
4,845,671	-		GFF4859	0.82	-0.5
4,845,726	+		GFF4859	0.89	-0.2
4,845,732	+		GFF4859	0.90	-0.7
4,845,740	-				-0.8
4,845,744	-				-0.2
4,845,744	-				+0.4
4,845,758	+				+0.5
4,845,776	+				-0.5
4,845,784	-				-0.2
4,845,794	+				+1.1
4,845,794	+				-0.5
4,845,797	-				-1.1
4,845,900	+		GFF4860	0.14	-0.5
4,845,904	-		GFF4860	0.16	+0.5
4,845,904	-		GFF4860	0.16	-0.3
4,845,914	-		GFF4860	0.19	-0.5
4,845,920	-		GFF4860	0.22	-0.5
4,845,980	-		GFF4860	0.44	-1.3
4,846,023	+		GFF4860	0.60	+0.5
4,846,026	-		GFF4860	0.61	+0.2
4,846,038	+		GFF4860	0.66	+0.0
4,846,038	+		GFF4860	0.66	-0.3
4,846,048	+		GFF4860	0.70	+0.7
4,846,059	-		GFF4860	0.74	-0.5
4,846,077	-		GFF4860	0.81	-1.5
4,846,078	-		GFF4860	0.81	-0.9
4,846,078	-		GFF4860	0.81	-0.9
4,846,078	-		GFF4860	0.81	-0.1
4,846,084	-		GFF4860	0.83	-0.5
4,846,142	+				-0.9
4,846,161	-				-1.4
4,846,190	+				+0.5
4,846,294	-				-0.7
4,846,327	-				+1.0
4,846,337	-				-0.4
4,846,363	-				+0.3
4,846,368	-				-2.3
4,846,434	+				+0.5
4,846,436	+				+0.2
4,846,436	+				+0.4
4,846,440	-				+1.2
4,846,442	-				-0.4
4,846,442	-				-1.3
4,846,442	-				-0.6
4,846,447	-				+0.4
4,846,450	-				+0.1
4,846,451	-				+0.5
4,846,455	-				-1.3
4,846,463	+				+0.7
4,846,476	-				-1.1
4,846,486	+				-0.7
4,846,486	-				-1.0
4,846,486	-				-1.8
4,846,504	-				-1.3
4,846,509	-				-2.0
4,846,547	+				+0.3
4,846,550	-				-0.1
4,846,555	-				+1.6
4,846,567	-				-2.1
4,846,569	+				+0.1
4,846,572	-				-0.8
4,846,577	+				+0.1
4,846,579	+				+0.4
4,846,585	-				-1.0
4,846,585	-				+0.7
4,846,587	-				-0.3
4,846,592	+				+0.8
4,846,652	+		GFF4861	0.13	+0.8
4,846,681	+		GFF4861	0.15	+0.5
4,846,689	-		GFF4861	0.15	+0.8
4,846,689	-		GFF4861	0.15	-0.2
4,846,694	+		GFF4861	0.16	-0.5
4,846,694	+		GFF4861	0.16	-0.6
4,846,702	-		GFF4861	0.16	-0.9
4,846,702	-		GFF4861	0.16	-0.5
4,846,705	+		GFF4861	0.16	+0.3
4,846,705	+		GFF4861	0.16	-0.1
4,846,705	+		GFF4861	0.16	+0.4
4,846,705	+		GFF4861	0.16	-1.0
4,846,729	+		GFF4861	0.18	-0.7
4,846,737	-		GFF4861	0.18	-1.0
4,846,737	-		GFF4861	0.18	+0.5
4,846,737	-		GFF4861	0.18	+0.3
4,846,743	-		GFF4861	0.19	+0.3
4,846,743	-		GFF4861	0.19	-0.7
4,846,745	-		GFF4861	0.19	+0.7
4,846,747	+		GFF4861	0.19	-0.7
4,846,747	+		GFF4861	0.19	-1.7
4,846,755	-		GFF4861	0.20	-0.0
4,846,755	-		GFF4861	0.20	+0.0
4,846,755	-		GFF4861	0.20	+0.1
4,846,755	-		GFF4861	0.20	+0.8
4,846,757	+		GFF4861	0.20	-0.5
4,846,775	-		GFF4861	0.21	-0.6
4,846,775	-		GFF4861	0.21	-1.9
4,846,782	+		GFF4861	0.22	-0.1
4,846,790	-		GFF4861	0.22	-1.0
4,846,795	+		GFF4861	0.22	+0.6
4,846,795	+		GFF4861	0.22	+0.1
4,846,795	+		GFF4861	0.22	-0.2
4,846,795	+		GFF4861	0.22	+0.0
4,846,795	+		GFF4861	0.22	-1.5
4,846,795	+		GFF4861	0.22	-0.9
4,846,795	+		GFF4861	0.22	-0.3
4,846,795	+		GFF4861	0.22	-1.2
4,846,795	+		GFF4861	0.22	-1.8
4,846,795	+		GFF4861	0.22	-1.3
4,846,795	+		GFF4861	0.22	+0.4
4,846,795	+		GFF4861	0.22	+0.2
4,846,795	+		GFF4861	0.22	+0.3
4,846,796	-		GFF4861	0.22	+0.1
4,846,803	-		GFF4861	0.23	-0.8
4,846,803	-		GFF4861	0.23	+0.2
4,846,803	-		GFF4861	0.23	+0.4
4,846,803	-		GFF4861	0.23	+0.7
4,846,803	-		GFF4861	0.23	+0.1
4,846,803	-		GFF4861	0.23	-0.4
4,846,803	-		GFF4861	0.23	+0.3
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