Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF484 and GFF485 overlap by 4 nucleotides GFF485 and GFF486 are separated by 196 nucleotides GFF486 and GFF487 are separated by 184 nucleotides
GFF484 - Predicted carboxypeptidase, at 485,078 to 486,208
GFF484
GFF485 - hypothetical protein, at 486,205 to 486,795
GFF485
GFF486 - LSU ribosomal protein L36p @ LSU ribosomal protein L36p, zinc-independent, at 486,992 to 487,117
GFF486
GFF487 - Pyruvate kinase (EC 2.7.1.40), at 487,302 to 488,774
GFF487
Position (kb) 486
487 Strain fitness (log2 ratio) -2
-1
0
1
2 at 485.240 kb on - strand, within GFF484 at 485.256 kb on + strand, within GFF484 at 485.264 kb on - strand, within GFF484 at 485.264 kb on - strand, within GFF484 at 485.264 kb on - strand, within GFF484 at 485.264 kb on - strand, within GFF484 at 485.265 kb on - strand, within GFF484 at 485.288 kb on + strand, within GFF484 at 485.288 kb on + strand, within GFF484 at 485.296 kb on - strand, within GFF484 at 485.346 kb on - strand, within GFF484 at 485.369 kb on + strand, within GFF484 at 485.377 kb on - strand, within GFF484 at 485.382 kb on - strand, within GFF484 at 485.390 kb on - strand, within GFF484 at 485.394 kb on + strand, within GFF484 at 485.394 kb on + strand, within GFF484 at 485.396 kb on - strand, within GFF484 at 485.431 kb on - strand, within GFF484 at 485.434 kb on - strand, within GFF484 at 485.461 kb on - strand, within GFF484 at 485.462 kb on - strand, within GFF484 at 485.473 kb on + strand, within GFF484 at 485.474 kb on + strand, within GFF484 at 485.485 kb on + strand, within GFF484 at 485.509 kb on + strand, within GFF484 at 485.509 kb on + strand, within GFF484 at 485.517 kb on - strand, within GFF484 at 485.530 kb on + strand, within GFF484 at 485.538 kb on - strand, within GFF484 at 485.542 kb on + strand, within GFF484 at 485.555 kb on - strand, within GFF484 at 485.560 kb on - strand, within GFF484 at 485.562 kb on - strand, within GFF484 at 485.588 kb on - strand, within GFF484 at 485.608 kb on - strand, within GFF484 at 485.637 kb on - strand, within GFF484 at 485.670 kb on - strand, within GFF484 at 485.681 kb on + strand, within GFF484 at 485.681 kb on + strand, within GFF484 at 485.689 kb on - strand, within GFF484 at 485.693 kb on + strand, within GFF484 at 485.746 kb on - strand, within GFF484 at 485.748 kb on + strand, within GFF484 at 485.767 kb on - strand, within GFF484 at 485.779 kb on + strand, within GFF484 at 485.785 kb on + strand, within GFF484 at 485.793 kb on - strand, within GFF484 at 485.806 kb on + strand, within GFF484 at 485.836 kb on + strand, within GFF484 at 485.844 kb on - strand, within GFF484 at 485.844 kb on - strand, within GFF484 at 485.844 kb on - strand, within GFF484 at 485.849 kb on - strand, within GFF484 at 485.853 kb on + strand, within GFF484 at 485.859 kb on - strand, within GFF484 at 485.859 kb on - strand, within GFF484 at 485.859 kb on - strand, within GFF484 at 485.859 kb on - strand, within GFF484 at 485.859 kb on - strand, within GFF484 at 485.880 kb on - strand, within GFF484 at 485.886 kb on + strand, within GFF484 at 485.894 kb on - strand, within GFF484 at 485.894 kb on - strand, within GFF484 at 485.925 kb on - strand, within GFF484 at 485.933 kb on + strand, within GFF484 at 485.937 kb on + strand, within GFF484 at 485.975 kb on - strand, within GFF484 at 485.977 kb on + strand, within GFF484 at 485.986 kb on + strand, within GFF484 at 485.996 kb on + strand, within GFF484 at 485.998 kb on + strand, within GFF484 at 486.006 kb on - strand, within GFF484 at 486.008 kb on + strand, within GFF484 at 486.008 kb on + strand, within GFF484 at 486.008 kb on + strand, within GFF484 at 486.011 kb on - strand, within GFF484 at 486.013 kb on + strand, within GFF484 at 486.016 kb on - strand, within GFF484 at 486.023 kb on + strand, within GFF484 at 486.023 kb on + strand, within GFF484 at 486.031 kb on - strand, within GFF484 at 486.031 kb on - strand, within GFF484 at 486.031 kb on - strand, within GFF484 at 486.040 kb on - strand, within GFF484 at 486.045 kb on - strand, within GFF484 at 486.052 kb on + strand, within GFF484 at 486.052 kb on + strand, within GFF484 at 486.052 kb on + strand, within GFF484 at 486.060 kb on - strand, within GFF484 at 486.065 kb on - strand, within GFF484 at 486.081 kb on - strand, within GFF484 at 486.093 kb on + strand, within GFF484 at 486.098 kb on + strand at 486.098 kb on + strand at 486.112 kb on - strand at 486.136 kb on + strand at 486.144 kb on - strand at 486.160 kb on - strand at 486.179 kb on + strand at 486.179 kb on + strand at 486.187 kb on - strand at 486.198 kb on + strand at 486.213 kb on + strand at 486.213 kb on + strand at 486.213 kb on + strand at 486.221 kb on - strand at 486.245 kb on + strand at 486.245 kb on + strand at 486.245 kb on + strand at 486.245 kb on + strand at 486.253 kb on - strand at 486.253 kb on - strand at 486.253 kb on - strand at 486.253 kb on - strand at 486.253 kb on - strand at 486.253 kb on - strand at 486.253 kb on - strand at 486.279 kb on - strand, within GFF485 at 486.294 kb on + strand, within GFF485 at 486.296 kb on - strand, within GFF485 at 486.296 kb on - strand, within GFF485 at 486.299 kb on + strand, within GFF485 at 486.321 kb on - strand, within GFF485 at 486.325 kb on + strand, within GFF485 at 486.333 kb on + strand, within GFF485 at 486.333 kb on - strand, within GFF485 at 486.376 kb on - strand, within GFF485 at 486.393 kb on + strand, within GFF485 at 486.398 kb on + strand, within GFF485 at 486.398 kb on + strand, within GFF485 at 486.399 kb on + strand, within GFF485 at 486.406 kb on - strand, within GFF485 at 486.406 kb on - strand, within GFF485 at 486.407 kb on - strand, within GFF485 at 486.417 kb on + strand, within GFF485 at 486.418 kb on + strand, within GFF485 at 486.425 kb on - strand, within GFF485 at 486.441 kb on + strand, within GFF485 at 486.449 kb on - strand, within GFF485 at 486.449 kb on - strand, within GFF485 at 486.455 kb on + strand, within GFF485 at 486.455 kb on + strand, within GFF485 at 486.455 kb on + strand, within GFF485 at 486.455 kb on + strand, within GFF485 at 486.455 kb on + strand, within GFF485 at 486.460 kb on + strand, within GFF485 at 486.460 kb on + strand, within GFF485 at 486.463 kb on - strand, within GFF485 at 486.463 kb on - strand, within GFF485 at 486.463 kb on - strand, within GFF485 at 486.468 kb on - strand, within GFF485 at 486.468 kb on - strand, within GFF485 at 486.468 kb on - strand, within GFF485 at 486.468 kb on - strand, within GFF485 at 486.468 kb on - strand, within GFF485 at 486.468 kb on - strand, within GFF485 at 486.468 kb on - strand, within GFF485 at 486.482 kb on + strand, within GFF485 at 486.485 kb on - strand, within GFF485 at 486.517 kb on - strand, within GFF485 at 486.517 kb on - strand, within GFF485 at 486.517 kb on - strand, within GFF485 at 486.519 kb on + strand, within GFF485 at 486.527 kb on - strand, within GFF485 at 486.536 kb on + strand, within GFF485 at 486.541 kb on + strand, within GFF485 at 486.544 kb on - strand, within GFF485 at 486.546 kb on + strand, within GFF485 at 486.554 kb on - strand, within GFF485 at 486.559 kb on + strand, within GFF485 at 486.576 kb on + strand, within GFF485 at 486.580 kb on + strand, within GFF485 at 486.583 kb on - strand, within GFF485 at 486.588 kb on - strand, within GFF485 at 486.588 kb on - strand, within GFF485 at 486.588 kb on - strand, within GFF485 at 486.588 kb on - strand, within GFF485 at 486.603 kb on - strand, within GFF485 at 486.603 kb on - strand, within GFF485 at 486.685 kb on + strand, within GFF485 at 486.690 kb on + strand, within GFF485 at 486.690 kb on + strand, within GFF485 at 486.690 kb on + strand, within GFF485 at 486.690 kb on + strand, within GFF485 at 486.693 kb on - strand, within GFF485 at 486.693 kb on - strand, within GFF485 at 486.693 kb on - strand, within GFF485 at 486.693 kb on - strand, within GFF485 at 486.693 kb on - strand, within GFF485 at 486.698 kb on - strand, within GFF485 at 486.698 kb on - strand, within GFF485 at 486.698 kb on - strand, within GFF485 at 486.698 kb on - strand, within GFF485 at 486.698 kb on - strand, within GFF485 at 486.698 kb on - strand, within GFF485 at 486.698 kb on - strand, within GFF485 at 486.698 kb on - strand, within GFF485 at 486.719 kb on + strand, within GFF485 at 486.720 kb on + strand, within GFF485 at 486.727 kb on + strand, within GFF485 at 486.727 kb on - strand, within GFF485 at 486.749 kb on + strand at 486.749 kb on + strand at 486.749 kb on + strand at 486.749 kb on + strand at 486.749 kb on + strand at 486.753 kb on - strand at 486.759 kb on + strand at 486.759 kb on + strand at 486.759 kb on + strand at 486.759 kb on + strand at 486.759 kb on + strand at 486.759 kb on + strand at 486.765 kb on + strand at 486.765 kb on + strand at 486.765 kb on + strand at 486.767 kb on - strand at 486.767 kb on - strand at 486.773 kb on - strand at 486.773 kb on - strand at 486.773 kb on - strand at 486.780 kb on - strand at 486.786 kb on + strand at 486.794 kb on - strand at 486.799 kb on + strand at 486.808 kb on + strand at 486.813 kb on + strand at 486.818 kb on + strand at 486.818 kb on + strand at 486.820 kb on + strand at 486.820 kb on + strand at 486.826 kb on - strand at 486.826 kb on - strand at 486.826 kb on - strand at 486.828 kb on - strand at 486.828 kb on - strand at 486.828 kb on - strand at 486.828 kb on - strand at 486.855 kb on - strand at 486.862 kb on + strand at 486.862 kb on + strand at 486.863 kb on + strand at 486.863 kb on + strand at 486.871 kb on - strand at 486.871 kb on - strand at 486.884 kb on + strand at 486.892 kb on - strand at 486.892 kb on - strand at 486.892 kb on - strand at 486.911 kb on - strand at 486.921 kb on - strand at 486.921 kb on - strand at 487.112 kb on + strand at 487.129 kb on + strand at 487.152 kb on - strand at 487.169 kb on - strand at 487.170 kb on - strand at 487.308 kb on - strand at 487.322 kb on - strand at 487.334 kb on + strand at 487.334 kb on + strand at 487.342 kb on - strand at 487.342 kb on - strand at 487.342 kb on - strand at 487.342 kb on - strand at 487.351 kb on - strand at 487.412 kb on + strand at 487.449 kb on + strand at 487.449 kb on + strand at 487.525 kb on + strand, within GFF487 at 487.530 kb on + strand, within GFF487 at 487.530 kb on + strand, within GFF487 at 487.533 kb on - strand, within GFF487 at 487.533 kb on - strand, within GFF487 at 487.533 kb on - strand, within GFF487 at 487.533 kb on - strand, within GFF487 at 487.533 kb on - strand, within GFF487 at 487.552 kb on + strand, within GFF487 at 487.552 kb on + strand, within GFF487 at 487.560 kb on - strand, within GFF487 at 487.560 kb on - strand, within GFF487 at 487.621 kb on - strand, within GFF487 at 487.626 kb on - strand, within GFF487 at 487.641 kb on + strand, within GFF487 at 487.682 kb on - strand, within GFF487 at 487.684 kb on + strand, within GFF487 at 487.684 kb on + strand, within GFF487 at 487.791 kb on + strand, within GFF487
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 485,240 - GFF484 0.14 -0.0 485,256 + GFF484 0.16 +1.0 485,264 - GFF484 0.16 -0.2 485,264 - GFF484 0.16 -0.0 485,264 - GFF484 0.16 -0.2 485,264 - GFF484 0.16 -1.4 485,265 - GFF484 0.17 +0.4 485,288 + GFF484 0.19 -0.2 485,288 + GFF484 0.19 -1.1 485,296 - GFF484 0.19 +1.3 485,346 - GFF484 0.24 -0.8 485,369 + GFF484 0.26 -0.6 485,377 - GFF484 0.26 -0.5 485,382 - GFF484 0.27 +0.9 485,390 - GFF484 0.28 -0.9 485,394 + GFF484 0.28 +1.0 485,394 + GFF484 0.28 -0.9 485,396 - GFF484 0.28 +0.4 485,431 - GFF484 0.31 -2.0 485,434 - GFF484 0.31 +0.3 485,461 - GFF484 0.34 -0.4 485,462 - GFF484 0.34 +1.0 485,473 + GFF484 0.35 -1.4 485,474 + GFF484 0.35 +0.3 485,485 + GFF484 0.36 -0.4 485,509 + GFF484 0.38 -0.5 485,509 + GFF484 0.38 -0.2 485,517 - GFF484 0.39 +0.0 485,530 + GFF484 0.40 -0.8 485,538 - GFF484 0.41 -0.3 485,542 + GFF484 0.41 -0.4 485,555 - GFF484 0.42 +1.1 485,560 - GFF484 0.43 -1.5 485,562 - GFF484 0.43 -0.7 485,588 - GFF484 0.45 +0.6 485,608 - GFF484 0.47 +0.7 485,637 - GFF484 0.49 -1.4 485,670 - GFF484 0.52 +0.2 485,681 + GFF484 0.53 +1.3 485,681 + GFF484 0.53 -0.5 485,689 - GFF484 0.54 -0.3 485,693 + GFF484 0.54 -1.7 485,746 - GFF484 0.59 +1.2 485,748 + GFF484 0.59 -0.7 485,767 - GFF484 0.61 -0.9 485,779 + GFF484 0.62 +1.7 485,785 + GFF484 0.63 -0.7 485,793 - GFF484 0.63 +0.4 485,806 + GFF484 0.64 +0.3 485,836 + GFF484 0.67 +0.2 485,844 - GFF484 0.68 -1.8 485,844 - GFF484 0.68 -1.8 485,844 - GFF484 0.68 +0.6 485,849 - GFF484 0.68 +0.5 485,853 + GFF484 0.69 +0.7 485,859 - GFF484 0.69 -0.4 485,859 - GFF484 0.69 -1.2 485,859 - GFF484 0.69 -0.2 485,859 - GFF484 0.69 -1.5 485,859 - GFF484 0.69 +0.1 485,880 - GFF484 0.71 +0.3 485,886 + GFF484 0.71 +0.5 485,894 - GFF484 0.72 -1.5 485,894 - GFF484 0.72 +0.8 485,925 - GFF484 0.75 +0.6 485,933 + GFF484 0.76 +0.2 485,937 + GFF484 0.76 -0.7 485,975 - GFF484 0.79 -0.2 485,977 + GFF484 0.79 -0.8 485,986 + GFF484 0.80 -0.2 485,996 + GFF484 0.81 -0.3 485,998 + GFF484 0.81 -1.1 486,006 - GFF484 0.82 -1.1 486,008 + GFF484 0.82 -1.8 486,008 + GFF484 0.82 -0.1 486,008 + GFF484 0.82 +0.8 486,011 - GFF484 0.82 -0.8 486,013 + GFF484 0.83 +0.6 486,016 - GFF484 0.83 -0.1 486,023 + GFF484 0.84 -0.8 486,023 + GFF484 0.84 -0.7 486,031 - GFF484 0.84 +0.2 486,031 - GFF484 0.84 -0.5 486,031 - GFF484 0.84 -0.1 486,040 - GFF484 0.85 -0.2 486,045 - GFF484 0.85 +0.1 486,052 + GFF484 0.86 -0.4 486,052 + GFF484 0.86 -1.1 486,052 + GFF484 0.86 -1.3 486,060 - GFF484 0.87 +0.7 486,065 - GFF484 0.87 -1.6 486,081 - GFF484 0.89 +1.0 486,093 + GFF484 0.90 -2.0 486,098 + -1.6 486,098 + -1.2 486,112 - +0.3 486,136 + -0.9 486,144 - +0.7 486,160 - -1.6 486,179 + -1.2 486,179 + -0.0 486,187 - +0.2 486,198 + +1.0 486,213 + -2.0 486,213 + -0.9 486,213 + -0.4 486,221 - +1.9 486,245 + -0.9 486,245 + +0.1 486,245 + -1.2 486,245 + -2.2 486,253 - -1.5 486,253 - +0.8 486,253 - +0.5 486,253 - +0.4 486,253 - +0.1 486,253 - -1.4 486,253 - +0.7 486,279 - GFF485 0.13 +1.0 486,294 + GFF485 0.15 +0.2 486,296 - GFF485 0.15 +1.3 486,296 - GFF485 0.15 +0.6 486,299 + GFF485 0.16 +1.0 486,321 - GFF485 0.20 -0.7 486,325 + GFF485 0.20 -1.6 486,333 + GFF485 0.22 -0.5 486,333 - GFF485 0.22 -0.1 486,376 - GFF485 0.29 +0.4 486,393 + GFF485 0.32 +0.1 486,398 + GFF485 0.33 -0.2 486,398 + GFF485 0.33 +0.1 486,399 + GFF485 0.33 -1.6 486,406 - GFF485 0.34 +0.9 486,406 - GFF485 0.34 -0.6 486,407 - GFF485 0.34 +0.0 486,417 + GFF485 0.36 -0.2 486,418 + GFF485 0.36 +0.3 486,425 - GFF485 0.37 -0.9 486,441 + GFF485 0.40 -1.2 486,449 - GFF485 0.41 -0.4 486,449 - GFF485 0.41 -0.5 486,455 + GFF485 0.42 -0.5 486,455 + GFF485 0.42 -0.1 486,455 + GFF485 0.42 -1.6 486,455 + GFF485 0.42 +0.4 486,455 + GFF485 0.42 +0.1 486,460 + GFF485 0.43 +0.1 486,460 + GFF485 0.43 -1.5 486,463 - GFF485 0.44 +0.9 486,463 - GFF485 0.44 -0.0 486,463 - GFF485 0.44 -1.6 486,468 - GFF485 0.45 -0.2 486,468 - GFF485 0.45 -1.0 486,468 - GFF485 0.45 -0.3 486,468 - GFF485 0.45 +0.5 486,468 - GFF485 0.45 +0.2 486,468 - GFF485 0.45 -0.5 486,468 - GFF485 0.45 -0.2 486,482 + GFF485 0.47 -0.3 486,485 - GFF485 0.47 +1.2 486,517 - GFF485 0.53 +0.8 486,517 - GFF485 0.53 -0.1 486,517 - GFF485 0.53 +0.1 486,519 + GFF485 0.53 +1.3 486,527 - GFF485 0.54 -0.4 486,536 + GFF485 0.56 -2.0 486,541 + GFF485 0.57 -0.4 486,544 - GFF485 0.57 -2.6 486,546 + GFF485 0.58 -0.5 486,554 - GFF485 0.59 +0.4 486,559 + GFF485 0.60 -1.4 486,576 + GFF485 0.63 -0.4 486,580 + GFF485 0.63 -0.0 486,583 - GFF485 0.64 +1.5 486,588 - GFF485 0.65 +0.5 486,588 - GFF485 0.65 -0.9 486,588 - GFF485 0.65 -1.2 486,588 - GFF485 0.65 +0.6 486,603 - GFF485 0.67 -1.4 486,603 - GFF485 0.67 -0.8 486,685 + GFF485 0.81 +0.1 486,690 + GFF485 0.82 -2.0 486,690 + GFF485 0.82 +0.6 486,690 + GFF485 0.82 +0.2 486,690 + GFF485 0.82 -1.7 486,693 - GFF485 0.83 -1.1 486,693 - GFF485 0.83 +0.0 486,693 - GFF485 0.83 +0.4 486,693 - GFF485 0.83 +0.9 486,693 - GFF485 0.83 -0.7 486,698 - GFF485 0.83 -1.7 486,698 - GFF485 0.83 -1.1 486,698 - GFF485 0.83 -0.4 486,698 - GFF485 0.83 -0.2 486,698 - GFF485 0.83 +0.6 486,698 - GFF485 0.83 +0.1 486,698 - GFF485 0.83 -0.2 486,698 - GFF485 0.83 -1.1 486,719 + GFF485 0.87 -1.0 486,720 + GFF485 0.87 +0.1 486,727 + GFF485 0.88 +0.1 486,727 - GFF485 0.88 -0.4 486,749 + -0.5 486,749 + +0.3 486,749 + -0.5 486,749 + -1.0 486,749 + -0.2 486,753 - +0.1 486,759 + +0.4 486,759 + +0.3 486,759 + -1.8 486,759 + -0.5 486,759 + +0.7 486,759 + +0.2 486,765 + +0.6 486,765 + +0.3 486,765 + +0.3 486,767 - -2.5 486,767 - +0.0 486,773 - -0.3 486,773 - -0.0 486,773 - -0.0 486,780 - -1.0 486,786 + -0.2 486,794 - -1.6 486,799 + +0.6 486,808 + -0.3 486,813 + +0.8 486,818 + -2.7 486,818 + +0.1 486,820 + -1.4 486,820 + +1.5 486,826 - +1.0 486,826 - -1.7 486,826 - -0.4 486,828 - -0.4 486,828 - -2.4 486,828 - -1.4 486,828 - -1.1 486,855 - -0.7 486,862 + -2.2 486,862 + -1.3 486,863 + -0.4 486,863 + -0.1 486,871 - +0.1 486,871 - +0.1 486,884 + -1.2 486,892 - -0.2 486,892 - -0.2 486,892 - +1.3 486,911 - +0.9 486,921 - -0.3 486,921 - -1.2 487,112 + +1.3 487,129 + +0.6 487,152 - -1.6 487,169 - +0.4 487,170 - +1.3 487,308 - +1.5 487,322 - -0.6 487,334 + -0.8 487,334 + -1.0 487,342 - -0.8 487,342 - -0.3 487,342 - -1.0 487,342 - -1.2 487,351 - -0.2 487,412 + -0.8 487,449 + +0.1 487,449 + +0.4 487,525 + GFF487 0.15 -1.4 487,530 + GFF487 0.15 -0.4 487,530 + GFF487 0.15 -1.2 487,533 - GFF487 0.16 +0.5 487,533 - GFF487 0.16 +0.5 487,533 - GFF487 0.16 -1.4 487,533 - GFF487 0.16 -0.5 487,533 - GFF487 0.16 -0.7 487,552 + GFF487 0.17 -0.5 487,552 + GFF487 0.17 +0.1 487,560 - GFF487 0.18 -1.6 487,560 - GFF487 0.18 -0.1 487,621 - GFF487 0.22 +0.2 487,626 - GFF487 0.22 -0.5 487,641 + GFF487 0.23 +0.6 487,682 - GFF487 0.26 +1.2 487,684 + GFF487 0.26 -1.2 487,684 + GFF487 0.26 +0.2 487,791 + GFF487 0.33 +0.2
Or see this region's nucleotide sequence