Strain Fitness in Sphingobium sp. HT1-2 around GFF4828

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,812,357	+				-0.6
4,812,388	-				+1.1
4,812,533	-		GFF4827	0.11	-0.2
4,812,544	+		GFF4827	0.12	-1.0
4,812,571	+		GFF4827	0.17	-0.6
4,812,612	+		GFF4827	0.23	+0.3
4,812,620	-		GFF4827	0.25	-1.3
4,812,630	-		GFF4827	0.26	+0.7
4,812,630	-		GFF4827	0.26	+0.1
4,812,644	+		GFF4827	0.29	-0.3
4,812,663	+		GFF4827	0.32	-0.9
4,812,695	+		GFF4827	0.37	-0.6
4,812,695	+		GFF4827	0.37	+0.2
4,812,696	+		GFF4827	0.37	+0.4
4,812,698	-		GFF4827	0.37	+0.9
4,812,703	-		GFF4827	0.38	-0.2
4,812,703	-		GFF4827	0.38	+0.8
4,812,703	-		GFF4827	0.38	+0.1
4,812,724	-		GFF4827	0.42	-1.8
4,812,724	-		GFF4827	0.42	+0.7
4,812,724	-		GFF4827	0.42	-0.4
4,812,768	+		GFF4827	0.49	-1.2
4,812,773	+		GFF4827	0.50	-0.5
4,812,776	+		GFF4827	0.50	-1.0
4,812,781	-		GFF4827	0.51	+1.4
4,812,786	+		GFF4827	0.52	-0.6
4,812,793	+		GFF4827	0.53	-0.3
4,812,808	+		GFF4827	0.55	-0.4
4,812,808	+		GFF4827	0.55	-0.7
4,812,827	-		GFF4827	0.58	-0.8
4,812,829	+		GFF4827	0.59	-0.3
4,812,829	+		GFF4827	0.59	+1.8
4,812,829	+		GFF4827	0.59	+0.7
4,812,842	-		GFF4827	0.61	-0.5
4,812,857	-		GFF4827	0.63	+0.1
4,812,869	+		GFF4827	0.65	+0.2
4,812,877	-		GFF4827	0.67	+0.2
4,812,883	+		GFF4827	0.67	-0.3
4,812,891	-		GFF4827	0.69	-0.3
4,812,920	+		GFF4827	0.73	-1.3
4,812,939	-		GFF4827	0.77	+0.6
4,812,957	-		GFF4827	0.80	+1.4
4,812,968	+		GFF4827	0.81	+1.4
4,812,976	-		GFF4827	0.83	+0.0
4,813,008	+		GFF4827	0.88	-1.6
4,813,015	+		GFF4827	0.89	-0.5
4,813,023	+				+0.2
4,813,023	+				+0.2
4,813,023	-				+0.2
4,813,037	-				+0.4
4,813,078	+				-2.4
4,813,081	-				+0.2
4,813,090	-				-0.2
4,813,100	-				-0.2
4,813,163	+				+0.0
4,813,192	+				+0.9
4,813,232	+				+0.8
4,813,243	+				+1.1
4,813,243	+				+1.8
4,813,251	-				+0.4
4,813,251	-				-2.1
4,813,251	-				+1.0
4,813,260	+				+0.2
4,813,268	-				+0.5
4,813,278	-				+0.1
4,813,278	-				-1.1
4,813,278	-				+0.9
4,813,283	-				-2.0
4,813,283	-				+0.9
4,813,285	-				-0.7
4,813,290	+				+1.6
4,813,298	-				-0.5
4,813,305	-				-0.9
4,813,330	-				-0.4
4,813,342	-		GFF4828	0.10	+1.2
4,813,352	-		GFF4828	0.11	-1.9
4,813,448	+		GFF4828	0.20	+0.3
4,813,448	+		GFF4828	0.20	+0.9
4,813,456	-		GFF4828	0.21	-0.2
4,813,538	-		GFF4828	0.28	-2.2
4,813,555	-		GFF4828	0.30	+0.5
4,813,561	+		GFF4828	0.30	+1.3
4,813,569	-		GFF4828	0.31	-0.7
4,813,577	+		GFF4828	0.32	+0.6
4,813,577	+		GFF4828	0.32	-0.0
4,813,578	+		GFF4828	0.32	+1.3
4,813,585	-		GFF4828	0.32	-0.8
4,813,586	-		GFF4828	0.32	+1.8
4,813,586	-		GFF4828	0.32	+1.1
4,813,586	-		GFF4828	0.32	-1.8
4,813,586	-		GFF4828	0.32	-0.2
4,813,597	+		GFF4828	0.33	+0.4
4,813,602	+		GFF4828	0.34	+0.1
4,813,607	+		GFF4828	0.34	+0.7
4,813,615	+		GFF4828	0.35	+0.1
4,813,615	-		GFF4828	0.35	-0.7
4,813,648	+		GFF4828	0.38	-1.0
4,813,654	+		GFF4828	0.39	-0.3
4,813,682	+		GFF4828	0.41	-1.0
4,813,682	+		GFF4828	0.41	-1.0
4,813,682	+		GFF4828	0.41	-0.8
4,813,690	-		GFF4828	0.42	-0.7
4,813,719	-		GFF4828	0.44	+0.4
4,813,727	-		GFF4828	0.45	-0.4
4,813,734	-		GFF4828	0.46	-1.2
4,813,734	-		GFF4828	0.46	-0.4
4,813,740	+		GFF4828	0.46	-2.3
4,813,746	+		GFF4828	0.47	+0.1
4,813,760	-		GFF4828	0.48	-1.9
4,813,780	-		GFF4828	0.50	+0.2
4,813,782	+		GFF4828	0.50	+0.6
4,813,796	+		GFF4828	0.51	+0.8
4,813,803	+		GFF4828	0.52	-0.4
4,813,804	-		GFF4828	0.52	-1.0
4,813,806	+		GFF4828	0.52	-2.3
4,813,814	-		GFF4828	0.53	+0.4
4,813,825	+		GFF4828	0.54	+0.3
4,813,842	-		GFF4828	0.56	-0.1
4,813,857	+		GFF4828	0.57	-0.4
4,813,865	-		GFF4828	0.58	-1.2
4,813,865	-		GFF4828	0.58	-0.4
4,813,871	+		GFF4828	0.58	+0.5
4,813,889	+		GFF4828	0.60	-0.6
4,813,903	+		GFF4828	0.61	+1.1
4,813,911	+		GFF4828	0.62	-0.0
4,813,913	+		GFF4828	0.62	+0.5
4,813,923	+		GFF4828	0.63	-1.4
4,813,931	-		GFF4828	0.64	-0.5
4,813,945	-		GFF4828	0.65	+0.2
4,813,975	+		GFF4828	0.68	-0.1
4,813,975	+		GFF4828	0.68	-0.2
4,813,975	+		GFF4828	0.68	-0.7
4,813,975	+		GFF4828	0.68	+1.0
4,813,975	+		GFF4828	0.68	+0.5
4,813,975	+		GFF4828	0.68	-0.0
4,813,975	+		GFF4828	0.68	+0.8
4,813,975	+		GFF4828	0.68	-0.2
4,813,975	+		GFF4828	0.68	-1.1
4,813,975	+		GFF4828	0.68	-1.1
4,813,975	+		GFF4828	0.68	-1.6
4,813,975	+		GFF4828	0.68	+1.8
4,813,975	+		GFF4828	0.68	+0.9
4,813,975	+		GFF4828	0.68	+0.6
4,813,975	+		GFF4828	0.68	+0.1
4,813,975	+		GFF4828	0.68	-0.1
4,813,978	-		GFF4828	0.68	-0.6
4,813,980	+		GFF4828	0.68	-2.1
4,813,980	+		GFF4828	0.68	+0.6
4,813,980	+		GFF4828	0.68	-0.3
4,813,983	-		GFF4828	0.68	+0.6
4,813,983	-		GFF4828	0.68	+1.5
4,813,983	-		GFF4828	0.68	+0.4
4,813,983	-		GFF4828	0.68	-1.3
4,813,983	-		GFF4828	0.68	-0.7
4,813,983	-		GFF4828	0.68	-1.5
4,813,983	-		GFF4828	0.68	+0.1
4,813,983	-		GFF4828	0.68	-0.2
4,813,983	-		GFF4828	0.68	-0.9
4,813,983	-		GFF4828	0.68	-0.8
4,813,983	-		GFF4828	0.68	+0.1
4,813,983	-		GFF4828	0.68	+0.2
4,813,983	-		GFF4828	0.68	-0.2
4,813,983	-		GFF4828	0.68	-1.6
4,813,983	-		GFF4828	0.68	-0.8
4,813,983	-		GFF4828	0.68	+0.6
4,813,988	-		GFF4828	0.69	+0.7
4,813,988	-		GFF4828	0.69	-1.2
4,813,988	-		GFF4828	0.69	-2.0
4,813,994	+		GFF4828	0.69	-1.6
4,813,998	-		GFF4828	0.70	-0.7
4,814,002	-		GFF4828	0.70	-1.3
4,814,060	+		GFF4828	0.75	-1.6
4,814,095	-		GFF4828	0.78	+0.1
4,814,110	+		GFF4828	0.80	-1.2
4,814,115	+		GFF4828	0.80	+0.1
4,814,118	-		GFF4828	0.80	-1.0
4,814,118	-		GFF4828	0.80	-0.2
4,814,129	+		GFF4828	0.81	+1.7
4,814,158	+		GFF4828	0.84	+0.6
4,814,158	+		GFF4828	0.84	-0.5
4,814,158	+		GFF4828	0.84	+0.2
4,814,158	+		GFF4828	0.84	-0.4
4,814,158	+		GFF4828	0.84	-0.4
4,814,158	+		GFF4828	0.84	-1.2
4,814,166	-		GFF4828	0.85	+0.5
4,814,170	+		GFF4828	0.85	-2.0
4,814,176	+		GFF4828	0.86	+1.7
4,814,176	+		GFF4828	0.86	+1.5
4,814,184	-		GFF4828	0.86	-0.3
4,814,188	+		GFF4828	0.87	-0.3
4,814,194	+		GFF4828	0.87	+0.9
4,814,199	+		GFF4828	0.88	+0.5
4,814,199	+		GFF4828	0.88	-0.6
4,814,199	+		GFF4828	0.88	+2.1
4,814,199	+		GFF4828	0.88	-0.2
4,814,199	+		GFF4828	0.88	-0.0
4,814,199	+		GFF4828	0.88	-1.1
4,814,199	+		GFF4828	0.88	+0.6
4,814,207	-		GFF4828	0.89	-0.4
4,814,207	-		GFF4828	0.89	+0.3
4,814,207	-		GFF4828	0.89	+0.4
4,814,207	-		GFF4828	0.89	-0.2
4,814,207	-		GFF4828	0.89	-1.0
4,814,207	-		GFF4828	0.89	-0.2
4,814,209	+		GFF4828	0.89	-0.4
4,814,217	-		GFF4828	0.89	-1.0
4,814,222	-		GFF4828	0.90	-0.4
4,814,231	-				+0.3
4,814,238	+				+0.3
4,814,238	+				-1.3
4,814,248	-				+0.4
4,814,248	-				+0.4
4,814,248	-				+0.1
4,814,287	-				-0.7
4,814,295	-				+0.2
4,814,296	-				+0.6
4,814,299	-				-0.1
4,814,299	-				+1.9
4,814,299	-				+0.3
4,814,304	-				-0.6
4,814,304	-				-0.7
4,814,304	-				-1.0
4,814,316	+				+0.1
4,814,331	+				-1.1
4,814,336	+				+0.6
4,814,360	+				-0.4
4,814,374	+				-1.7
4,814,374	+				-0.9
4,814,382	-		GFF4829	0.10	-0.7
4,814,391	-		GFF4829	0.12	+0.3
4,814,418	-		GFF4829	0.17	+0.9
4,814,478	+		GFF4829	0.28	-2.4
4,814,486	-		GFF4829	0.30	-0.5
4,814,486	-		GFF4829	0.30	+0.7
4,814,491	-		GFF4829	0.31	-0.0
4,814,499	+		GFF4829	0.32	-0.7
4,814,518	-		GFF4829	0.36	+1.3
4,814,522	-		GFF4829	0.36	-2.4
4,814,525	+		GFF4829	0.37	-0.2
4,814,530	+		GFF4829	0.38	+0.4
4,814,533	-		GFF4829	0.39	+1.1
4,814,561	-		GFF4829	0.44	+0.1
4,814,581	-		GFF4829	0.47	-1.3
4,814,584	-		GFF4829	0.48	+0.2
4,814,592	+		GFF4829	0.50	-1.2
4,814,601	+		GFF4829	0.51	-2.2
4,814,605	+		GFF4829	0.52	-0.1
4,814,623	-		GFF4829	0.55	-2.3
4,814,628	-		GFF4829	0.56	-0.7
4,814,641	-		GFF4829	0.59	-0.4
4,814,720	+		GFF4829	0.73	-1.3
4,814,721	+		GFF4829	0.74	+0.8
4,814,729	+		GFF4829	0.75	+0.8
4,814,729	+		GFF4829	0.75	+0.6
4,814,729	+		GFF4829	0.75	+1.0
4,814,729	-		GFF4829	0.75	-1.6
4,814,729	-		GFF4829	0.75	+1.0
4,814,729	-		GFF4829	0.75	-0.3
4,814,737	-		GFF4829	0.77	-0.6
4,814,737	-		GFF4829	0.77	+0.4
4,814,737	-		GFF4829	0.77	+0.0
4,814,739	+		GFF4829	0.77	+0.5
4,814,739	+		GFF4829	0.77	+0.7
4,814,800	+		GFF4829	0.88	+0.6
4,814,856	-				+0.3
4,814,878	+				-0.6
4,814,886	-				-1.1
4,814,902	+				+0.0
4,814,903	+				+0.1
4,814,908	+				-1.1
4,814,915	+				+0.0
4,814,916	-				+0.7
4,814,916	-				+0.0
4,814,923	+				+0.3
4,814,923	-				-1.9
4,814,940	+				+0.7
4,814,958	-				-0.2
4,814,988	+				-0.1
4,814,988	+				+1.0
4,814,996	-				+0.7
4,814,996	-				-0.9
4,815,003	+				-1.5
4,815,011	-				-0.7
4,815,028	+				-0.1
4,815,028	+				+0.3
4,815,028	+				-0.9
4,815,028	+				-0.2
4,815,028	+				-0.6
4,815,028	+				-0.1
4,815,033	+				+0.4
4,815,041	-				+0.4
4,815,061	-				-0.6
4,815,062	+				-2.1
4,815,070	-		GFF4830	0.10	+0.0
4,815,086	-		GFF4830	0.12	-0.7
4,815,088	+		GFF4830	0.12	+0.7
4,815,088	+		GFF4830	0.12	-1.1
4,815,088	+		GFF4830	0.12	-0.4
4,815,088	+		GFF4830	0.12	+0.5
4,815,088	+		GFF4830	0.12	-0.7
4,815,088	+		GFF4830	0.12	-0.1
4,815,088	+		GFF4830	0.12	-0.3
4,815,088	-		GFF4830	0.12	-1.2
4,815,112	+		GFF4830	0.14	-0.7
4,815,112	+		GFF4830	0.14	+0.6
4,815,112	+		GFF4830	0.14	+0.7
4,815,112	+		GFF4830	0.14	+0.5
4,815,120	-		GFF4830	0.14	-1.2
4,815,120	-		GFF4830	0.14	+0.5
4,815,120	-		GFF4830	0.14	-0.3
4,815,120	-		GFF4830	0.14	-1.5
4,815,120	-		GFF4830	0.14	-1.0
4,815,129	+		GFF4830	0.15	-1.2
4,815,129	+		GFF4830	0.15	-1.0
4,815,135	-		GFF4830	0.16	+1.2
4,815,135	-		GFF4830	0.16	+0.2
4,815,164	-		GFF4830	0.18	+1.3
4,815,174	+		GFF4830	0.19	+0.4
4,815,182	-		GFF4830	0.19	-0.7
4,815,184	+		GFF4830	0.20	-2.8
4,815,190	-		GFF4830	0.20	+0.8
4,815,198	+		GFF4830	0.21	+0.1
4,815,211	+		GFF4830	0.22	-0.7
4,815,232	+		GFF4830	0.24	-0.8
4,815,232	+		GFF4830	0.24	-1.7
4,815,232	+		GFF4830	0.24	-0.7
4,815,252	+		GFF4830	0.25	+1.3
4,815,260	-		GFF4830	0.26	-1.2
4,815,260	-		GFF4830	0.26	+0.9
4,815,267	-		GFF4830	0.26	+0.6
4,815,275	-		GFF4830	0.27	-1.7
4,815,277	+		GFF4830	0.27	+1.4
4,815,299	+		GFF4830	0.29	-0.4
4,815,302	+		GFF4830	0.29	-0.6
4,815,310	-		GFF4830	0.30	+0.2
4,815,310	-		GFF4830	0.30	-0.1
4,815,317	+		GFF4830	0.30	+0.5
4,815,318	-		GFF4830	0.31	-1.3
4,815,320	-		GFF4830	0.31	-0.1