Strain Fitness in Sphingobium sp. HT1-2 around GFF4825

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,809,861	-		GFF4823	0.82	+0.3
4,809,863	+		GFF4823	0.82	-0.5
4,809,883	-		GFF4823	0.88	-0.3
4,809,888	-				-0.1
4,809,890	+				-0.6
4,809,890	+				-0.4
4,809,890	+				-1.0
4,809,894	+				-1.2
4,809,894	+				-0.1
4,809,898	-				+0.2
4,809,898	-				+0.1
4,809,902	-				+1.1
4,809,902	-				-0.8
4,809,902	-				-0.9
4,809,902	-				+0.2
4,809,902	-				-0.7
4,809,954	+				-0.1
4,809,957	-				+0.1
4,809,962	-				+1.2
4,809,964	+				-0.1
4,809,964	+				-0.7
4,809,964	+				-0.7
4,809,967	-				-0.5
4,809,969	+				-0.4
4,809,969	+				+0.9
4,809,969	+				+0.3
4,809,969	+				+0.3
4,809,969	+				+0.0
4,809,969	+				-0.3
4,809,969	+				+0.3
4,809,972	-				-0.7
4,809,977	-				+0.8
4,809,977	-				-1.4
4,809,977	-				+0.2
4,809,982	-				-0.9
4,809,982	-				+0.5
4,809,986	+				+0.8
4,810,004	-				-0.8
4,810,008	-		GFF4824	0.10	+0.4
4,810,036	+		GFF4824	0.13	+0.5
4,810,052	+		GFF4824	0.15	+0.4
4,810,062	+		GFF4824	0.16	+0.1
4,810,064	+		GFF4824	0.16	-2.3
4,810,072	+		GFF4824	0.17	+0.8
4,810,072	+		GFF4824	0.17	-1.0
4,810,072	+		GFF4824	0.17	-0.2
4,810,072	+		GFF4824	0.17	+0.5
4,810,072	+		GFF4824	0.17	+0.3
4,810,080	-		GFF4824	0.18	-1.4
4,810,080	-		GFF4824	0.18	+0.6
4,810,080	-		GFF4824	0.18	-1.8
4,810,080	-		GFF4824	0.18	-0.5
4,810,080	-		GFF4824	0.18	-0.1
4,810,080	-		GFF4824	0.18	+0.3
4,810,080	-		GFF4824	0.18	+0.9
4,810,102	-		GFF4824	0.20	+0.4
4,810,108	+		GFF4824	0.21	-1.2
4,810,109	+		GFF4824	0.21	+0.2
4,810,110	-		GFF4824	0.21	+0.5
4,810,128	-		GFF4824	0.23	-1.0
4,810,128	-		GFF4824	0.23	+0.3
4,810,128	-		GFF4824	0.23	+0.2
4,810,134	-		GFF4824	0.24	-0.3
4,810,134	-		GFF4824	0.24	+0.7
4,810,151	+		GFF4824	0.26	+0.9
4,810,153	-		GFF4824	0.26	-0.5
4,810,165	+		GFF4824	0.27	-1.7
4,810,165	+		GFF4824	0.27	-0.6
4,810,168	+		GFF4824	0.28	-0.1
4,810,168	+		GFF4824	0.28	-0.8
4,810,173	-		GFF4824	0.28	+1.0
4,810,175	+		GFF4824	0.28	+0.7
4,810,176	-		GFF4824	0.29	-0.0
4,810,176	-		GFF4824	0.29	+0.3
4,810,176	-		GFF4824	0.29	+0.2
4,810,176	-		GFF4824	0.29	-0.3
4,810,176	-		GFF4824	0.29	+0.7
4,810,177	+		GFF4824	0.29	+0.4
4,810,185	-		GFF4824	0.30	+0.5
4,810,198	+		GFF4824	0.31	-0.1
4,810,198	-		GFF4824	0.31	-0.9
4,810,203	+		GFF4824	0.32	-2.1
4,810,204	+		GFF4824	0.32	-2.0
4,810,208	+		GFF4824	0.32	-0.2
4,810,209	+		GFF4824	0.32	+0.8
4,810,209	+		GFF4824	0.32	-1.1
4,810,211	-		GFF4824	0.32	-1.1
4,810,213	+		GFF4824	0.33	-0.2
4,810,216	-		GFF4824	0.33	-0.4
4,810,217	-		GFF4824	0.33	+1.1
4,810,217	-		GFF4824	0.33	-1.2
4,810,221	-		GFF4824	0.34	+1.3
4,810,227	-		GFF4824	0.34	+0.1
4,810,239	+		GFF4824	0.36	+0.6
4,810,239	-		GFF4824	0.36	+0.8
4,810,241	-		GFF4824	0.36	-2.1
4,810,256	+		GFF4824	0.37	+0.4
4,810,256	+		GFF4824	0.37	+1.4
4,810,259	-		GFF4824	0.38	+0.5
4,810,266	+		GFF4824	0.39	+0.7
4,810,266	-		GFF4824	0.39	-0.3
4,810,288	+		GFF4824	0.41	-0.2
4,810,301	+		GFF4824	0.42	+0.7
4,810,309	-		GFF4824	0.43	-1.2
4,810,309	-		GFF4824	0.43	+0.1
4,810,319	+		GFF4824	0.44	-0.4
4,810,325	+		GFF4824	0.45	+1.0
4,810,325	+		GFF4824	0.45	+0.7
4,810,337	+		GFF4824	0.46	+0.8
4,810,355	-		GFF4824	0.48	-0.2
4,810,355	-		GFF4824	0.48	+0.1
4,810,355	-		GFF4824	0.48	-0.8
4,810,357	+		GFF4824	0.49	-0.3
4,810,360	-		GFF4824	0.49	+0.8
4,810,360	-		GFF4824	0.49	-1.2
4,810,362	+		GFF4824	0.49	-0.7
4,810,367	+		GFF4824	0.50	+0.9
4,810,375	-		GFF4824	0.51	+0.5
4,810,383	+		GFF4824	0.51	+1.1
4,810,396	+		GFF4824	0.53	-0.2
4,810,396	+		GFF4824	0.53	-0.8
4,810,404	-		GFF4824	0.54	+1.2
4,810,408	-		GFF4824	0.54	-0.7
4,810,424	+		GFF4824	0.56	-0.8
4,810,424	+		GFF4824	0.56	+0.7
4,810,424	+		GFF4824	0.56	+0.1
4,810,424	+		GFF4824	0.56	+0.1
4,810,424	+		GFF4824	0.56	-0.3
4,810,424	+		GFF4824	0.56	+0.9
4,810,424	+		GFF4824	0.56	-0.0
4,810,432	-		GFF4824	0.57	+1.1
4,810,432	-		GFF4824	0.57	-1.8
4,810,432	-		GFF4824	0.57	-0.7
4,810,432	-		GFF4824	0.57	-0.7
4,810,432	-		GFF4824	0.57	-2.0
4,810,432	-		GFF4824	0.57	+0.0
4,810,432	-		GFF4824	0.57	-3.5
4,810,437	-		GFF4824	0.57	-0.6
4,810,449	+		GFF4824	0.59	-0.7
4,810,449	+		GFF4824	0.59	+0.5
4,810,449	+		GFF4824	0.59	-1.3
4,810,449	+		GFF4824	0.59	+1.2
4,810,449	-		GFF4824	0.59	+0.5
4,810,456	-		GFF4824	0.59	+0.1
4,810,457	-		GFF4824	0.60	+0.6
4,810,457	-		GFF4824	0.60	-1.4
4,810,457	-		GFF4824	0.60	+1.0
4,810,471	-		GFF4824	0.61	-0.7
4,810,481	+		GFF4824	0.62	+0.1
4,810,488	+		GFF4824	0.63	-1.3
4,810,494	+		GFF4824	0.64	-0.7
4,810,494	+		GFF4824	0.64	+0.2
4,810,494	+		GFF4824	0.64	-1.2
4,810,494	+		GFF4824	0.64	-0.7
4,810,494	+		GFF4824	0.64	-0.4
4,810,501	-		GFF4824	0.64	-0.1
4,810,502	-		GFF4824	0.65	-0.8
4,810,502	-		GFF4824	0.65	+0.4
4,810,523	+		GFF4824	0.67	-0.5
4,810,529	+		GFF4824	0.68	+1.4
4,810,537	+		GFF4824	0.68	-0.4
4,810,539	+		GFF4824	0.69	-0.8
4,810,543	+		GFF4824	0.69	-2.5
4,810,545	-		GFF4824	0.69	-1.2
4,810,561	+		GFF4824	0.71	-0.3
4,810,566	+		GFF4824	0.72	-0.9
4,810,566	+		GFF4824	0.72	+0.2
4,810,574	-		GFF4824	0.73	+0.4
4,810,574	-		GFF4824	0.73	-0.6
4,810,574	-		GFF4824	0.73	-1.4
4,810,574	-		GFF4824	0.73	+0.2
4,810,574	-		GFF4824	0.73	+0.6
4,810,598	+		GFF4824	0.75	-0.3
4,810,606	-		GFF4824	0.76	-0.7
4,810,606	-		GFF4824	0.76	-0.7
4,810,609	+		GFF4824	0.76	-1.3
4,810,636	+		GFF4824	0.79	+0.2
4,810,641	+		GFF4824	0.80	-1.2
4,810,641	+		GFF4824	0.80	-1.0
4,810,641	+		GFF4824	0.80	+0.2
4,810,641	-		GFF4824	0.80	-0.9
4,810,644	-		GFF4824	0.80	+0.5
4,810,644	-		GFF4824	0.80	+1.2
4,810,649	-		GFF4824	0.81	+0.3
4,810,650	-		GFF4824	0.81	+0.5
4,810,652	+		GFF4824	0.81	+0.2
4,810,654	+		GFF4824	0.81	-0.1
4,810,654	-		GFF4824	0.81	+0.2
4,810,659	+		GFF4824	0.82	+0.2
4,810,659	+		GFF4824	0.82	-1.0
4,810,659	+		GFF4824	0.82	+0.9
4,810,659	+		GFF4824	0.82	-0.8
4,810,659	+		GFF4824	0.82	-1.0
4,810,659	+		GFF4824	0.82	-1.7
4,810,659	+		GFF4824	0.82	+0.7
4,810,659	+		GFF4824	0.82	-0.8
4,810,659	+		GFF4824	0.82	-0.4
4,810,659	+		GFF4824	0.82	+0.5
4,810,659	+		GFF4824	0.82	-0.3
4,810,659	+		GFF4824	0.82	+0.4
4,810,659	+		GFF4824	0.82	-0.4
4,810,659	+		GFF4824	0.82	-0.3
4,810,659	+		GFF4824	0.82	-0.6
4,810,659	+		GFF4824	0.82	-0.0
4,810,659	+		GFF4824	0.82	-0.4
4,810,659	+		GFF4824	0.82	-1.5
4,810,659	-		GFF4824	0.82	-0.3
4,810,660	+		GFF4824	0.82	+1.2
4,810,665	+		GFF4824	0.83	+0.8
4,810,667	+		GFF4824	0.83	-0.3
4,810,667	-		GFF4824	0.83	-0.4
4,810,667	-		GFF4824	0.83	+0.4
4,810,667	-		GFF4824	0.83	-0.2
4,810,667	-		GFF4824	0.83	+0.2
4,810,667	-		GFF4824	0.83	+0.4
4,810,667	-		GFF4824	0.83	+1.0
4,810,667	-		GFF4824	0.83	+1.5
4,810,667	-		GFF4824	0.83	+0.3
4,810,667	-		GFF4824	0.83	-0.2
4,810,667	-		GFF4824	0.83	+0.2
4,810,668	-		GFF4824	0.83	+0.6
4,810,668	-		GFF4824	0.83	+0.1
4,810,675	-		GFF4824	0.84	+0.4
4,810,677	+		GFF4824	0.84	-0.2
4,810,677	+		GFF4824	0.84	+0.4
4,810,677	+		GFF4824	0.84	-0.7
4,810,678	+		GFF4824	0.84	+0.6
4,810,685	-		GFF4824	0.85	-1.9
4,810,685	-		GFF4824	0.85	+0.1
4,810,685	-		GFF4824	0.85	+1.0
4,810,685	-		GFF4824	0.85	-0.9
4,810,686	-		GFF4824	0.85	+1.2
4,810,686	-		GFF4824	0.85	+0.3
4,810,686	-		GFF4824	0.85	+1.2
4,810,688	+		GFF4824	0.85	+1.0
4,810,696	-		GFF4824	0.86	+0.1
4,810,703	-		GFF4824	0.87	-0.8
4,810,727	-		GFF4824	0.89	-0.0
4,810,736	-				+0.1
4,810,746	-				-1.7
4,810,746	-				-2.7
4,810,746	-				-1.3
4,810,857	+				+0.7
4,810,857	+				-0.0
4,810,864	+				-1.5
4,810,864	+				-0.3
4,810,864	+				+0.7
4,810,872	-				+1.5
4,810,888	-				-1.0
4,810,893	-				+0.5
4,810,895	+				+0.9
4,810,895	+				+0.2
4,810,895	+				-0.2
4,810,895	+				-0.0
4,810,903	-				-1.5
4,810,903	-				-0.4
4,810,903	-				+0.2
4,810,903	-				-0.4
4,810,932	+				-0.6
4,810,936	+				+0.2
4,810,940	-				+0.2
4,810,940	-				-1.6
4,810,944	-				+0.1
4,810,944	-				-0.5
4,810,945	-				-0.5
4,810,945	-				+0.0
4,810,959	-				+0.4
4,810,982	-		GFF4825	0.10	+1.8
4,810,983	-		GFF4825	0.10	+0.4
4,810,987	-		GFF4825	0.11	-0.6
4,810,991	-		GFF4825	0.11	+0.6
4,811,018	+		GFF4825	0.13	+0.5
4,811,018	+		GFF4825	0.13	-0.8
4,811,026	-		GFF4825	0.14	-0.3
4,811,026	-		GFF4825	0.14	+1.0
4,811,026	-		GFF4825	0.14	+0.1
4,811,029	+		GFF4825	0.14	-2.0
4,811,032	-		GFF4825	0.15	-2.7
4,811,032	-		GFF4825	0.15	+0.7
4,811,032	-		GFF4825	0.15	-0.4
4,811,032	-		GFF4825	0.15	-2.0
4,811,122	+		GFF4825	0.22	-1.9
4,811,122	+		GFF4825	0.22	-0.6
4,811,127	+		GFF4825	0.23	+0.3
4,811,127	+		GFF4825	0.23	+0.3
4,811,130	-		GFF4825	0.23	+0.5
4,811,130	-		GFF4825	0.23	+0.0
4,811,130	-		GFF4825	0.23	+1.9
4,811,130	-		GFF4825	0.23	-0.2
4,811,132	+		GFF4825	0.23	-0.1
4,811,140	-		GFF4825	0.24	-0.1
4,811,140	-		GFF4825	0.24	+0.0
4,811,153	+		GFF4825	0.25	-0.4
4,811,161	-		GFF4825	0.26	-0.9
4,811,161	-		GFF4825	0.26	-1.1
4,811,172	+		GFF4825	0.26	-1.5
4,811,173	-		GFF4825	0.27	-0.2
4,811,173	-		GFF4825	0.27	+0.7
4,811,178	+		GFF4825	0.27	+1.5
4,811,178	+		GFF4825	0.27	+0.8
4,811,178	+		GFF4825	0.27	-2.5
4,811,180	-		GFF4825	0.27	+0.2
4,811,180	-		GFF4825	0.27	+1.2
4,811,184	-		GFF4825	0.27	+1.4
4,811,186	-		GFF4825	0.28	+0.5
4,811,186	-		GFF4825	0.28	+0.3
4,811,186	-		GFF4825	0.28	-0.2
4,811,186	-		GFF4825	0.28	-0.9
4,811,186	-		GFF4825	0.28	+0.1
4,811,191	-		GFF4825	0.28	+0.9
4,811,224	-		GFF4825	0.31	-0.3
4,811,224	-		GFF4825	0.31	+0.7
4,811,239	+		GFF4825	0.32	-0.1
4,811,247	-		GFF4825	0.33	+0.0
4,811,251	-		GFF4825	0.33	-0.3
4,811,264	+		GFF4825	0.34	+0.3
4,811,264	+		GFF4825	0.34	+0.0
4,811,264	+		GFF4825	0.34	+0.7
4,811,272	-		GFF4825	0.35	+1.0
4,811,272	-		GFF4825	0.35	+0.4
4,811,272	-		GFF4825	0.35	+0.7
4,811,272	-		GFF4825	0.35	+0.1
4,811,272	-		GFF4825	0.35	-0.7
4,811,272	-		GFF4825	0.35	+0.5
4,811,277	+		GFF4825	0.35	-0.5
4,811,277	+		GFF4825	0.35	-0.8
4,811,334	-		GFF4825	0.40	-0.8
4,811,370	+		GFF4825	0.43	+1.1
4,811,370	+		GFF4825	0.43	-0.8
4,811,370	+		GFF4825	0.43	+0.5
4,811,370	+		GFF4825	0.43	+0.9
4,811,370	+		GFF4825	0.43	-1.1
4,811,370	+		GFF4825	0.43	+1.7
4,811,370	+		GFF4825	0.43	-1.6
4,811,370	+		GFF4825	0.43	-0.3
4,811,370	+		GFF4825	0.43	+0.4
4,811,378	-		GFF4825	0.44	-0.5
4,811,378	-		GFF4825	0.44	-0.9
4,811,378	-		GFF4825	0.44	+0.2
4,811,378	-		GFF4825	0.44	+0.3
4,811,378	-		GFF4825	0.44	+0.7
4,811,378	-		GFF4825	0.44	+0.5
4,811,378	-		GFF4825	0.44	+0.9
4,811,378	-		GFF4825	0.44	+0.1
4,811,378	-		GFF4825	0.44	+0.5
4,811,378	-		GFF4825	0.44	+0.7
4,811,378	-		GFF4825	0.44	-0.6
4,811,432	+		GFF4825	0.48	+0.4
4,811,447	-		GFF4825	0.50	+1.5
4,811,451	+		GFF4825	0.50	-1.6
4,811,456	+		GFF4825	0.51	-0.1
4,811,456	+		GFF4825	0.51	+1.3
4,811,464	-		GFF4825	0.51	+0.4
4,811,466	-		GFF4825	0.51	+0.6
4,811,470	+		GFF4825	0.52	-0.2
4,811,470	+		GFF4825	0.52	+0.2
4,811,478	-		GFF4825	0.52	+0.0
4,811,478	-		GFF4825	0.52	-0.2
4,811,494	+		GFF4825	0.54	-0.6
4,811,496	+		GFF4825	0.54	-2.0
4,811,513	+		GFF4825	0.55	-0.1
4,811,518	+		GFF4825	0.56	+0.7
4,811,548	+		GFF4825	0.58	-1.3
4,811,571	+		GFF4825	0.60	-1.6
4,811,571	+		GFF4825	0.60	+0.3
4,811,571	+		GFF4825	0.60	-0.4
4,811,571	+		GFF4825	0.60	+0.9
4,811,571	+		GFF4825	0.60	+0.6
4,811,571	+		GFF4825	0.60	-0.8
4,811,573	-		GFF4825	0.60	-0.3
4,811,573	-		GFF4825	0.60	-1.0
4,811,576	+		GFF4825	0.61	+0.2
4,811,579	-		GFF4825	0.61	-0.5
4,811,581	+		GFF4825	0.61	+0.2
4,811,581	+		GFF4825	0.61	+0.4
4,811,584	-		GFF4825	0.61	+0.8
4,811,589	-		GFF4825	0.62	-0.4
4,811,589	-		GFF4825	0.62	-0.2
4,811,589	-		GFF4825	0.62	+0.4
4,811,592	-		GFF4825	0.62	-2.0
4,811,594	-		GFF4825	0.62	+0.4
4,811,640	-		GFF4825	0.66	+0.1
4,811,643	+		GFF4825	0.66	-0.8
4,811,648	+		GFF4825	0.67	+0.7
4,811,651	-		GFF4825	0.67	-1.0
4,811,681	+		GFF4825	0.70	+0.9
4,811,690	+		GFF4825	0.70	+0.3
4,811,710	+		GFF4825	0.72	+0.8
4,811,728	-		GFF4825	0.74	-1.8
4,811,744	+		GFF4825	0.75	-0.2
4,811,749	+		GFF4825	0.75	+1.3
4,811,751	+		GFF4825	0.75	+0.4
4,811,752	-		GFF4825	0.76	-0.6
4,811,756	+		GFF4825	0.76	+0.2
4,811,764	-		GFF4825	0.77	+0.4
4,811,785	+		GFF4825	0.78	+0.4
4,811,807	+		GFF4825	0.80	+0.2
4,811,824	+		GFF4825	0.82	+0.4
4,811,824	+		GFF4825	0.82	-0.5
4,811,827	-		GFF4825	0.82	-2.0
4,811,832	-		GFF4825	0.82	+0.0
4,811,907	+		GFF4825	0.89	-0.9
4,811,942	-				-0.6
4,811,942	-				-0.5
4,811,942	-				+0.9
4,811,947	-				-2.5
4,811,947	-				-0.2
4,811,947	-				-0.2
4,811,959	+				-1.8
4,812,006	-				+1.2
4,812,029	+				-1.3
4,812,037	-				-0.6
4,812,072	-				+0.2
4,812,077	+				+0.7
4,812,077	+				+0.0
4,812,077	+				+0.9
4,812,082	+				+0.7
4,812,122	+				+2.4
4,812,150	+		GFF4826	0.12	-1.8
4,812,158	-		GFF4826	0.16	-0.2
4,812,357	+				-0.6
4,812,388	-				+1.1
4,812,533	-		GFF4827	0.11	-0.2
4,812,544	+		GFF4827	0.12	-1.0
4,812,571	+		GFF4827	0.17	-0.6
4,812,612	+		GFF4827	0.23	+0.3
4,812,620	-		GFF4827	0.25	-1.3
4,812,630	-		GFF4827	0.26	+0.7
4,812,630	-		GFF4827	0.26	+0.1
4,812,644	+		GFF4827	0.29	-0.3
4,812,663	+		GFF4827	0.32	-0.9
4,812,695	+		GFF4827	0.37	-0.6
4,812,695	+		GFF4827	0.37	+0.2
4,812,696	+		GFF4827	0.37	+0.4
4,812,698	-		GFF4827	0.37	+0.9
4,812,703	-		GFF4827	0.38	-0.2
4,812,703	-		GFF4827	0.38	+0.8
4,812,703	-		GFF4827	0.38	+0.1
4,812,724	-		GFF4827	0.42	-1.8
4,812,724	-		GFF4827	0.42	+0.7
4,812,724	-		GFF4827	0.42	-0.4
4,812,768	+		GFF4827	0.49	-1.2
4,812,773	+		GFF4827	0.50	-0.5
4,812,776	+		GFF4827	0.50	-1.0
4,812,781	-		GFF4827	0.51	+1.4
4,812,786	+		GFF4827	0.52	-0.6
4,812,793	+		GFF4827	0.53	-0.3
4,812,808	+		GFF4827	0.55	-0.4
4,812,808	+		GFF4827	0.55	-0.7
4,812,827	-		GFF4827	0.58	-0.8
4,812,829	+		GFF4827	0.59	-0.3
4,812,829	+		GFF4827	0.59	+1.8
4,812,829	+		GFF4827	0.59	+0.7
4,812,842	-		GFF4827	0.61	-0.5
4,812,857	-		GFF4827	0.63	+0.1
4,812,869	+		GFF4827	0.65	+0.2
4,812,877	-		GFF4827	0.67	+0.2
4,812,883	+		GFF4827	0.67	-0.3
4,812,891	-		GFF4827	0.69	-0.3
4,812,920	+		GFF4827	0.73	-1.3
4,812,939	-		GFF4827	0.77	+0.6
4,812,957	-		GFF4827	0.80	+1.4
4,812,968	+		GFF4827	0.81	+1.4
4,812,976	-		GFF4827	0.83	+0.0
4,813,008	+		GFF4827	0.88	-1.6
4,813,015	+		GFF4827	0.89	-0.5
4,813,023	+				+0.2
4,813,023	+				+0.2
4,813,023	-				+0.2
4,813,037	-				+0.4