Strain Fitness in Sphingobium sp. HT1-2 around GFF4820

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,805,719	+		GFF4819	0.55	-0.3
4,805,722	-		GFF4819	0.55	+0.6
4,805,726	-		GFF4819	0.56	+1.5
4,805,727	+		GFF4819	0.56	-0.4
4,805,737	+		GFF4819	0.56	+0.7
4,805,742	+		GFF4819	0.56	+0.8
4,805,747	+		GFF4819	0.57	-0.3
4,805,765	-		GFF4819	0.57	+0.5
4,805,772	+		GFF4819	0.58	+0.9
4,805,782	-		GFF4819	0.58	+0.7
4,805,793	+		GFF4819	0.59	+0.0
4,805,795	+		GFF4819	0.59	-0.1
4,805,795	+		GFF4819	0.59	-1.1
4,805,807	+		GFF4819	0.59	-1.1
4,805,808	-		GFF4819	0.59	-0.3
4,805,860	+		GFF4819	0.62	+0.6
4,805,868	-		GFF4819	0.62	+1.4
4,805,868	-		GFF4819	0.62	-0.1
4,805,886	+		GFF4819	0.63	-0.1
4,805,886	+		GFF4819	0.63	-0.5
4,805,894	-		GFF4819	0.63	-0.6
4,805,896	+		GFF4819	0.63	+0.8
4,805,902	-		GFF4819	0.64	+0.0
4,805,904	-		GFF4819	0.64	-0.1
4,805,918	+		GFF4819	0.64	-2.4
4,805,923	+		GFF4819	0.65	-0.1
4,805,929	+		GFF4819	0.65	-1.5
4,805,941	+		GFF4819	0.65	-0.4
4,805,949	-		GFF4819	0.66	+0.1
4,805,949	-		GFF4819	0.66	-0.5
4,805,949	-		GFF4819	0.66	-1.1
4,805,954	+		GFF4819	0.66	+1.0
4,805,977	-		GFF4819	0.67	-0.7
4,805,977	-		GFF4819	0.67	+0.6
4,805,977	-		GFF4819	0.67	+0.6
4,805,994	+		GFF4819	0.68	+0.3
4,806,002	-		GFF4819	0.68	+0.6
4,806,009	-		GFF4819	0.68	-0.6
4,806,009	-		GFF4819	0.68	+1.2
4,806,010	+		GFF4819	0.68	+0.1
4,806,013	+		GFF4819	0.69	-0.1
4,806,017	-		GFF4819	0.69	+0.3
4,806,046	+		GFF4819	0.70	-0.7
4,806,061	+		GFF4819	0.71	-1.0
4,806,061	+		GFF4819	0.71	-0.8
4,806,061	+		GFF4819	0.71	-0.5
4,806,069	-		GFF4819	0.71	+0.2
4,806,097	+		GFF4819	0.72	-1.0
4,806,105	-		GFF4819	0.73	-1.2
4,806,107	+		GFF4819	0.73	+0.6
4,806,115	-		GFF4819	0.73	+0.4
4,806,115	-		GFF4819	0.73	-1.0
4,806,115	-		GFF4819	0.73	+0.6
4,806,125	+		GFF4819	0.74	+0.4
4,806,125	+		GFF4819	0.74	+0.7
4,806,125	+		GFF4819	0.74	-1.1
4,806,133	-		GFF4819	0.74	-1.0
4,806,133	-		GFF4819	0.74	+0.5
4,806,150	+		GFF4819	0.75	-1.0
4,806,152	+		GFF4819	0.75	+0.8
4,806,158	+		GFF4819	0.75	-0.3
4,806,168	+		GFF4819	0.76	+0.8
4,806,176	-		GFF4819	0.76	-0.5
4,806,178	-		GFF4819	0.76	-0.2
4,806,179	-		GFF4819	0.76	-2.1
4,806,183	+		GFF4819	0.76	-0.0
4,806,196	-		GFF4819	0.77	-1.0
4,806,205	+		GFF4819	0.77	-1.4
4,806,205	+		GFF4819	0.77	-0.4
4,806,205	+		GFF4819	0.77	-0.4
4,806,208	-		GFF4819	0.77	-2.0
4,806,213	-		GFF4819	0.78	+0.9
4,806,232	+		GFF4819	0.78	-0.7
4,806,237	+		GFF4819	0.79	+0.4
4,806,237	+		GFF4819	0.79	+0.6
4,806,245	-		GFF4819	0.79	-0.1
4,806,245	-		GFF4819	0.79	+0.3
4,806,251	-		GFF4819	0.79	+0.0
4,806,292	-		GFF4819	0.81	-0.6
4,806,339	+		GFF4819	0.83	+0.9
4,806,347	-		GFF4819	0.84	-0.2
4,806,368	+		GFF4819	0.85	+0.6
4,806,373	+		GFF4819	0.85	+1.4
4,806,376	-		GFF4819	0.85	+0.7
4,806,383	+		GFF4819	0.85	-0.1
4,806,391	-		GFF4819	0.86	-0.0
4,806,398	+		GFF4819	0.86	+0.4
4,806,413	-		GFF4819	0.87	+0.9
4,806,413	-		GFF4819	0.87	-1.0
4,806,428	-		GFF4819	0.87	+0.1
4,806,431	+		GFF4819	0.87	+0.6
4,806,431	+		GFF4819	0.87	+0.8
4,806,431	+		GFF4819	0.87	-0.1
4,806,431	+		GFF4819	0.87	-0.3
4,806,439	-		GFF4819	0.88	+0.6
4,806,444	-		GFF4819	0.88	-0.1
4,806,448	+		GFF4819	0.88	+0.1
4,806,460	+		GFF4819	0.89	+0.5
4,806,480	-		GFF4819	0.90	+1.2
4,806,480	-		GFF4819	0.90	-0.9
4,806,480	-		GFF4819	0.90	+0.3
4,806,495	-				-1.7
4,806,514	-				+0.3
4,806,515	+				-0.2
4,806,515	+				+0.4
4,806,515	-				+0.7
4,806,522	-				-0.9
4,806,525	+				+0.5
4,806,529	+				+0.0
4,806,529	+				-0.2
4,806,529	+				-0.0
4,806,537	-				+0.1
4,806,543	-				+1.3
4,806,563	+				-0.1
4,806,563	+				+0.2
4,806,570	+				+0.1
4,806,571	-				-0.3
4,806,579	+				-2.0
4,806,583	+				-1.6
4,806,589	-				-0.5
4,806,603	+				-1.7
4,806,603	-				-1.3
4,806,625	-				+0.9
4,806,648	-				-0.1
4,806,660	-				+0.7
4,806,675	+				-1.1
4,806,675	+				+0.5
4,806,683	-				-0.4
4,806,691	-				-2.0
4,806,696	-				+0.1
4,806,718	+				-2.1
4,806,719	-				+0.6
4,806,724	-				-0.1
4,806,726	-				+0.4
4,806,731	+				+0.5
4,806,786	-				-0.7
4,806,806	-				-0.3
4,806,818	+				+0.8
4,806,826	-				+0.6
4,806,837	+		GFF4820	0.11	+0.4
4,806,837	+		GFF4820	0.11	-1.2
4,806,837	+		GFF4820	0.11	-2.0
4,806,837	+		GFF4820	0.11	-0.5
4,806,837	+		GFF4820	0.11	-1.4
4,806,838	-		GFF4820	0.11	+0.3
4,806,839	+		GFF4820	0.11	-0.4
4,806,845	-		GFF4820	0.12	-0.4
4,806,845	-		GFF4820	0.12	+1.4
4,806,845	-		GFF4820	0.12	-1.3
4,806,845	-		GFF4820	0.12	+0.0
4,806,845	-		GFF4820	0.12	+0.1
4,806,845	-		GFF4820	0.12	-1.7
4,806,861	+		GFF4820	0.13	+1.1
4,806,868	+		GFF4820	0.14	+0.5
4,806,870	+		GFF4820	0.14	-0.4
4,806,876	-		GFF4820	0.14	-0.1
4,806,876	-		GFF4820	0.14	+0.0
4,806,876	-		GFF4820	0.14	-0.2
4,806,876	-		GFF4820	0.14	-3.0
4,806,934	-		GFF4820	0.20	-1.5
4,806,947	-		GFF4820	0.21	-0.9
4,806,962	+		GFF4820	0.22	-0.3
4,806,978	+		GFF4820	0.24	-0.7
4,807,005	-		GFF4820	0.26	-0.4
4,807,022	-		GFF4820	0.28	-0.3
4,807,038	+		GFF4820	0.29	+0.1
4,807,046	-		GFF4820	0.30	-0.1
4,807,061	+		GFF4820	0.31	-0.2
4,807,070	-		GFF4820	0.32	-1.4
4,807,159	-		GFF4820	0.40	+1.3
4,807,167	+		GFF4820	0.41	-2.4
4,807,178	+		GFF4820	0.42	-1.4
4,807,184	-		GFF4820	0.42	+0.3
4,807,186	-		GFF4820	0.43	-0.2
4,807,213	+		GFF4820	0.45	-0.6
4,807,223	+		GFF4820	0.46	-0.7
4,807,231	-		GFF4820	0.47	-0.1
4,807,252	-		GFF4820	0.49	-2.4
4,807,252	-		GFF4820	0.49	-0.2
4,807,254	+		GFF4820	0.49	-1.8
4,807,258	-		GFF4820	0.49	-0.8
4,807,262	-		GFF4820	0.50	-0.2
4,807,266	+		GFF4820	0.50	+0.3
4,807,266	+		GFF4820	0.50	-0.1
4,807,266	+		GFF4820	0.50	-0.8
4,807,274	-		GFF4820	0.51	-0.7
4,807,287	+		GFF4820	0.52	+0.6
4,807,295	+		GFF4820	0.53	+0.2
4,807,295	+		GFF4820	0.53	-0.8
4,807,303	-		GFF4820	0.53	-0.0
4,807,316	+		GFF4820	0.55	-0.2
4,807,317	+		GFF4820	0.55	-1.8
4,807,319	+		GFF4820	0.55	-1.2
4,807,320	-		GFF4820	0.55	+0.9
4,807,321	+		GFF4820	0.55	+0.1
4,807,324	-		GFF4820	0.55	-0.7
4,807,335	+		GFF4820	0.56	-0.7
4,807,337	-		GFF4820	0.56	+0.4
4,807,339	+		GFF4820	0.57	+1.0
4,807,339	+		GFF4820	0.57	+0.9
4,807,339	+		GFF4820	0.57	+0.4
4,807,347	-		GFF4820	0.57	-1.0
4,807,359	+		GFF4820	0.58	+1.5
4,807,367	-		GFF4820	0.59	-0.4
4,807,367	-		GFF4820	0.59	-0.9
4,807,390	+		GFF4820	0.61	-1.7
4,807,398	-		GFF4820	0.62	+1.0
4,807,398	-		GFF4820	0.62	-0.6
4,807,418	-		GFF4820	0.64	+0.6
4,807,456	+		GFF4820	0.67	+0.2
4,807,464	-		GFF4820	0.68	-0.5
4,807,464	-		GFF4820	0.68	+1.3
4,807,477	-		GFF4820	0.69	+0.5
4,807,479	-		GFF4820	0.69	-1.7
4,807,535	+		GFF4820	0.75	+0.2
4,807,554	-		GFF4820	0.76	-0.2
4,807,563	-		GFF4820	0.77	+0.7
4,807,600	+		GFF4820	0.80	-0.6
4,807,621	+		GFF4820	0.82	+0.1
4,807,654	-		GFF4820	0.85	+0.3
4,807,685	+		GFF4820	0.88	-0.3
4,807,717	+				+0.4
4,807,717	-				-0.4
4,807,723	+				-1.4
4,807,745	-				-1.2
4,807,745	-				-0.8
4,807,755	-				+0.3
4,807,772	-				-1.8
4,807,787	-				-2.0
4,807,789	+				-1.4
4,807,814	-				-0.7
4,807,815	+				+0.0
4,807,823	-				-2.0
4,807,825	+				+0.8
4,807,825	-				+0.8
4,807,825	-				-0.2
4,807,827	+				-0.4
4,807,827	+				+0.2
4,807,833	-				-1.2
4,807,835	-				+0.3
4,807,838	+				+0.8
4,807,845	-				-0.2
4,807,850	+				-0.0
4,807,858	-				-0.4
4,808,240	+				-0.7
4,808,298	-				-2.4
4,808,318	+				-1.1
4,808,335	+				-0.6
4,808,335	+				-1.4
4,808,335	+				+0.5
4,808,335	+				-0.7
4,808,335	+				+0.6
4,808,335	+				+0.2
4,808,335	+				-0.1
4,808,335	+				+0.1
4,808,335	+				+0.4
4,808,343	-				-2.2
4,808,343	-				-0.3
4,808,398	-				-0.7
4,808,398	-				-0.2
4,808,400	-				-0.2
4,808,418	+				+1.6
4,808,419	+				+0.5
4,808,425	+				-1.7
4,808,425	+				+1.4
4,808,426	-				+0.9
4,808,443	-				-0.2
4,808,462	-				-1.7
4,808,464	+				-0.7
4,808,464	+				+0.5
4,808,469	+				-1.7
4,808,472	-				-0.3
4,808,482	-				+0.7
4,808,487	+				-0.7
4,808,505	+				-1.9
4,808,514	-				-1.4
4,808,562	-				+1.0
4,808,567	-				+0.4
4,808,621	+				-1.0
4,808,629	-				-0.4
4,808,638	+				-1.0
4,808,648	+				-0.0
4,808,648	-				+0.7
4,808,656	+				-0.5
4,808,656	+				+1.0
4,808,664	-				+0.3
4,808,664	-				-2.3
4,808,666	-				+0.2
4,808,693	+		GFF4822	0.12	-0.1
4,808,701	-		GFF4822	0.13	+0.4
4,808,701	-		GFF4822	0.13	-0.2
4,808,701	-		GFF4822	0.13	-0.0
4,808,759	-		GFF4822	0.20	-0.1
4,808,759	-		GFF4822	0.20	-1.1
4,808,759	-		GFF4822	0.20	-0.0
4,808,793	+		GFF4822	0.24	+0.8
4,808,808	+		GFF4822	0.25	+0.3