Strain Fitness in Sphingobium sp. HT1-2 around GFF4750

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,748,753	+		GFF4748	0.47	+0.2
4,748,753	+		GFF4748	0.47	-0.1
4,748,761	-		GFF4748	0.48	-0.6
4,748,761	-		GFF4748	0.48	-0.1
4,748,761	-		GFF4748	0.48	-0.8
4,748,780	+		GFF4748	0.51	-3.2
4,748,825	+		GFF4748	0.58	+0.2
4,748,833	-		GFF4748	0.59	+1.0
4,748,867	+		GFF4748	0.64	+0.6
4,748,915	+		GFF4748	0.72	+0.3
4,748,923	-		GFF4748	0.73	+1.1
4,748,940	-		GFF4748	0.76	-0.1
4,748,951	-		GFF4748	0.77	+0.1
4,748,992	+		GFF4748	0.84	+0.5
4,748,999	+		GFF4748	0.85	-0.6
4,749,002	-		GFF4748	0.85	-0.8
4,749,022	+		GFF4748	0.88	-0.8
4,749,023	+		GFF4748	0.88	-0.8
4,749,033	+				-0.3
4,749,033	+				-0.2
4,749,041	-				-0.7
4,749,041	-				-0.3
4,749,041	-				-1.7
4,749,067	+				+0.6
4,749,074	+				-0.2
4,749,074	+				-0.1
4,749,082	-				+0.2
4,749,082	-				+1.0
4,749,082	-				-2.8
4,749,084	+				+0.2
4,749,084	+				+0.0
4,749,084	+				+0.2
4,749,084	+				-0.1
4,749,084	+				+0.4
4,749,084	+				-0.0
4,749,084	+				-0.1
4,749,092	-				-0.2
4,749,116	+				+1.1
4,749,118	+				+0.2
4,749,118	+				+1.1
4,749,124	-				-0.1
4,749,126	-				+0.4
4,749,126	-				-2.3
4,749,126	-				-1.1
4,749,132	-				+0.0
4,749,136	+				-3.0
4,749,144	-				-0.7
4,749,145	+				+0.0
4,749,145	+				+0.7
4,749,145	+				+1.4
4,749,161	+				-2.2
4,749,179	-				-0.6
4,749,200	+				-0.8
4,749,292	-				-1.4
4,749,307	-				+0.5
4,749,309	-				-0.8
4,749,318	+				-0.2
4,749,319	+				+0.7
4,749,353	-		GFF4749	0.11	-0.6
4,749,353	-		GFF4749	0.11	+0.4
4,749,353	-		GFF4749	0.11	+0.3
4,749,381	+		GFF4749	0.18	-0.7
4,749,381	+		GFF4749	0.18	-0.4
4,749,404	+		GFF4749	0.23	+0.6
4,749,438	+		GFF4749	0.32	+0.9
4,749,438	+		GFF4749	0.32	+0.5
4,749,438	+		GFF4749	0.32	+0.2
4,749,438	+		GFF4749	0.32	+0.6
4,749,438	+		GFF4749	0.32	-2.4
4,749,438	+		GFF4749	0.32	-0.2
4,749,438	+		GFF4749	0.32	-2.8
4,749,438	+		GFF4749	0.32	+0.1
4,749,438	+		GFF4749	0.32	-1.6
4,749,446	-		GFF4749	0.34	-0.6
4,749,446	-		GFF4749	0.34	-0.5
4,749,446	-		GFF4749	0.34	+0.4
4,749,446	-		GFF4749	0.34	+1.3
4,749,446	-		GFF4749	0.34	-2.9
4,749,446	-		GFF4749	0.34	+0.2
4,749,446	-		GFF4749	0.34	+0.9
4,749,446	-		GFF4749	0.34	+0.4
4,749,446	-		GFF4749	0.34	-0.4
4,749,446	-		GFF4749	0.34	-0.1
4,749,448	+		GFF4749	0.34	+0.3
4,749,448	+		GFF4749	0.34	+0.5
4,749,451	-		GFF4749	0.35	+0.7
4,749,469	+		GFF4749	0.40	-0.4
4,749,491	+		GFF4749	0.45	+0.2
4,749,499	+		GFF4749	0.47	-0.2
4,749,499	+		GFF4749	0.47	+0.9
4,749,514	+		GFF4749	0.51	-1.0
4,749,514	+		GFF4749	0.51	-0.3
4,749,524	-		GFF4749	0.53	+0.8
4,749,579	-		GFF4749	0.67	-0.4
4,749,587	+		GFF4749	0.69	+0.3
4,749,592	+		GFF4749	0.70	-0.8
4,749,595	-		GFF4749	0.71	-0.3
4,749,600	-		GFF4749	0.72	+0.5
4,749,600	-		GFF4749	0.72	-0.2
4,749,600	-		GFF4749	0.72	-1.6
4,749,600	-		GFF4749	0.72	+0.3
4,749,606	+		GFF4749	0.73	-0.4
4,749,606	+		GFF4749	0.73	-0.4
4,749,607	-		GFF4749	0.74	-1.7
4,749,611	+		GFF4749	0.75	+1.0
4,749,621	+		GFF4749	0.77	+0.6
4,749,631	-		GFF4749	0.80	-0.1
4,749,645	-		GFF4749	0.83	+0.6
4,749,653	+		GFF4749	0.85	-1.0
4,749,654	+		GFF4749	0.85	+0.9
4,749,667	-		GFF4749	0.88	-0.0
4,749,667	-		GFF4749	0.88	-1.3
4,749,668	+		GFF4749	0.89	-0.3
4,749,668	+		GFF4749	0.89	+0.0
4,749,676	-				-1.7
4,749,680	+				-0.4
4,749,688	-				+0.4
4,749,692	+				-1.5
4,749,741	-				-0.8
4,749,758	-				-1.8
4,749,793	-				-1.1
4,749,859	+				+0.7
4,749,901	-		GFF4750	0.11	-0.4
4,749,905	+		GFF4750	0.12	-1.3
4,749,905	+		GFF4750	0.12	+1.1
4,749,908	+		GFF4750	0.12	+0.9
4,749,913	-		GFF4750	0.12	-0.3
4,749,913	-		GFF4750	0.12	+0.4
4,749,916	+		GFF4750	0.13	-0.6
4,749,937	+		GFF4750	0.14	+0.2
4,749,956	+		GFF4750	0.16	-0.5
4,749,971	+		GFF4750	0.17	+1.2
4,749,971	+		GFF4750	0.17	-1.1
4,749,972	-		GFF4750	0.17	+0.7
4,749,978	+		GFF4750	0.17	-0.7
4,749,978	+		GFF4750	0.17	+0.0
4,749,978	+		GFF4750	0.17	-0.4
4,749,978	+		GFF4750	0.17	+0.0
4,749,986	-		GFF4750	0.18	+0.5
4,749,986	-		GFF4750	0.18	-0.3
4,750,029	+		GFF4750	0.21	-1.7
4,750,032	-		GFF4750	0.22	-1.0
4,750,057	-		GFF4750	0.23	-2.4
4,750,071	+		GFF4750	0.25	-0.1
4,750,071	+		GFF4750	0.25	-1.1
4,750,071	+		GFF4750	0.25	+0.0
4,750,079	-		GFF4750	0.25	-1.4
4,750,079	-		GFF4750	0.25	+0.4
4,750,079	-		GFF4750	0.25	+1.4
4,750,081	+		GFF4750	0.25	+1.7
4,750,094	+		GFF4750	0.26	-1.7
4,750,094	+		GFF4750	0.26	-0.0
4,750,102	-		GFF4750	0.27	+0.2
4,750,102	-		GFF4750	0.27	-0.0
4,750,139	+		GFF4750	0.30	+0.5
4,750,140	+		GFF4750	0.30	+1.2
4,750,140	+		GFF4750	0.30	+0.9
4,750,148	-		GFF4750	0.30	-1.8
4,750,148	-		GFF4750	0.30	-0.1
4,750,148	-		GFF4750	0.30	-2.2
4,750,163	+		GFF4750	0.32	+0.3
4,750,163	+		GFF4750	0.32	-0.5
4,750,171	-		GFF4750	0.32	+0.2
4,750,171	-		GFF4750	0.32	-1.2
4,750,195	+		GFF4750	0.34	-1.1
4,750,197	+		GFF4750	0.34	-0.6
4,750,205	+		GFF4750	0.35	+0.6
4,750,207	+		GFF4750	0.35	-0.2
4,750,207	+		GFF4750	0.35	-0.1
4,750,207	+		GFF4750	0.35	+0.1
4,750,207	+		GFF4750	0.35	+0.7
4,750,207	+		GFF4750	0.35	-1.0
4,750,207	+		GFF4750	0.35	-0.7
4,750,207	+		GFF4750	0.35	+0.4
4,750,207	+		GFF4750	0.35	+0.3
4,750,207	+		GFF4750	0.35	+0.2
4,750,207	+		GFF4750	0.35	+0.4
4,750,207	+		GFF4750	0.35	-0.9
4,750,207	+		GFF4750	0.35	+0.2
4,750,207	+		GFF4750	0.35	+1.9
4,750,207	+		GFF4750	0.35	-0.8
4,750,207	+		GFF4750	0.35	-0.3
4,750,207	+		GFF4750	0.35	+0.8
4,750,207	+		GFF4750	0.35	-0.9
4,750,207	+		GFF4750	0.35	-0.5
4,750,210	-		GFF4750	0.35	-0.3
4,750,212	+		GFF4750	0.35	-0.6
4,750,215	-		GFF4750	0.36	+0.1
4,750,215	-		GFF4750	0.36	+0.5
4,750,215	-		GFF4750	0.36	-0.3
4,750,215	-		GFF4750	0.36	-0.5
4,750,215	-		GFF4750	0.36	-0.0
4,750,215	-		GFF4750	0.36	-0.1
4,750,215	-		GFF4750	0.36	+0.6
4,750,215	-		GFF4750	0.36	+0.8
4,750,215	-		GFF4750	0.36	+0.4
4,750,215	-		GFF4750	0.36	-0.3
4,750,215	-		GFF4750	0.36	-0.2
4,750,215	-		GFF4750	0.36	-2.7
4,750,215	-		GFF4750	0.36	-0.2
4,750,215	-		GFF4750	0.36	-1.0
4,750,215	-		GFF4750	0.36	-0.1
4,750,246	-		GFF4750	0.38	-0.4
4,750,285	-		GFF4750	0.41	-0.5
4,750,345	+		GFF4750	0.46	+0.6
4,750,363	-		GFF4750	0.47	-0.7
4,750,368	+		GFF4750	0.47	+1.5
4,750,397	+		GFF4750	0.50	+0.5
4,750,397	+		GFF4750	0.50	+0.3
4,750,400	-		GFF4750	0.50	-0.3
4,750,400	-		GFF4750	0.50	+0.2
4,750,405	-		GFF4750	0.50	+0.2
4,750,405	-		GFF4750	0.50	+0.3
4,750,405	-		GFF4750	0.50	+0.5
4,750,416	+		GFF4750	0.51	-1.3
4,750,426	-		GFF4750	0.52	-2.2
4,750,437	+		GFF4750	0.53	+0.3
4,750,437	-		GFF4750	0.53	+0.2
4,750,439	+		GFF4750	0.53	+0.1
4,750,447	-		GFF4750	0.53	+0.5
4,750,463	-		GFF4750	0.55	-0.2
4,750,463	-		GFF4750	0.55	+0.0
4,750,469	-		GFF4750	0.55	-0.2
4,750,482	-		GFF4750	0.56	-0.6
4,750,534	-		GFF4750	0.60	+0.5
4,750,552	+		GFF4750	0.61	+0.3
4,750,601	+		GFF4750	0.65	+0.7
4,750,605	+		GFF4750	0.66	+0.5
4,750,605	+		GFF4750	0.66	-0.3
4,750,606	+		GFF4750	0.66	-2.4
4,750,611	+		GFF4750	0.66	+0.1
4,750,619	-		GFF4750	0.67	-0.0
4,750,619	-		GFF4750	0.67	-0.8
4,750,619	-		GFF4750	0.67	-0.6
4,750,619	-		GFF4750	0.67	-0.2
4,750,620	-		GFF4750	0.67	-0.5
4,750,626	-		GFF4750	0.67	-0.1
4,750,636	-		GFF4750	0.68	+0.9
4,750,636	-		GFF4750	0.68	-0.2
4,750,637	+		GFF4750	0.68	-0.9
4,750,664	+		GFF4750	0.70	+0.8
4,750,664	+		GFF4750	0.70	-2.2
4,750,672	-		GFF4750	0.71	-0.9
4,750,672	-		GFF4750	0.71	-1.4
4,750,715	+		GFF4750	0.74	-0.3
4,750,715	+		GFF4750	0.74	-0.9
4,750,715	+		GFF4750	0.74	-0.5
4,750,723	-		GFF4750	0.75	-1.8
4,750,723	-		GFF4750	0.75	-0.1
4,750,723	-		GFF4750	0.75	+0.4
4,750,723	-		GFF4750	0.75	+0.3
4,750,723	-		GFF4750	0.75	+0.3
4,750,751	+		GFF4750	0.77	-0.5
4,750,752	+		GFF4750	0.77	-0.5
4,750,756	+		GFF4750	0.77	+0.1
4,750,756	+		GFF4750	0.77	-0.2
4,750,756	+		GFF4750	0.77	-0.5
4,750,756	+		GFF4750	0.77	+0.3
4,750,756	+		GFF4750	0.77	+0.5
4,750,756	+		GFF4750	0.77	-2.4
4,750,756	+		GFF4750	0.77	-1.1
4,750,757	+		GFF4750	0.77	-0.3
4,750,760	-		GFF4750	0.77	-1.5
4,750,760	-		GFF4750	0.77	+1.0
4,750,764	-		GFF4750	0.78	+0.3
4,750,764	-		GFF4750	0.78	+0.5
4,750,764	-		GFF4750	0.78	-0.3
4,750,766	+		GFF4750	0.78	-0.3
4,750,776	+		GFF4750	0.79	-1.1
4,750,786	+		GFF4750	0.79	-0.5
4,750,786	+		GFF4750	0.79	-0.8
4,750,786	-		GFF4750	0.79	-1.4
4,750,788	+		GFF4750	0.80	-0.7
4,750,795	-		GFF4750	0.80	+0.8
4,750,821	+		GFF4750	0.82	+1.0
4,750,826	+		GFF4750	0.82	+0.7
4,750,866	+		GFF4750	0.86	-1.4
4,750,898	-		GFF4750	0.88	+0.7
4,750,909	+		GFF4750	0.89	-0.9
4,750,911	+		GFF4750	0.89	+0.9
4,750,915	-		GFF4750	0.89	-0.9
4,750,924	+				+1.0
4,750,939	+				-0.9
4,750,952	+				+0.4
4,750,954	-				+0.1
4,750,960	-				-0.3
4,750,960	-				+0.7
4,750,967	+				+1.4
4,750,967	+				+0.5
4,750,975	-				-0.1
4,750,975	-				+0.3
4,750,993	+				+0.5
4,751,007	-				+0.3
4,751,018	+				+0.9
4,751,047	-				-0.8
4,751,060	+				-0.6
4,751,079	-				+0.8
4,751,111	+				-3.4
4,751,127	+				-1.5
4,751,127	+				+0.4
4,751,127	+				+0.6
4,751,135	-				-0.0
4,751,135	-				-0.5
4,751,135	-				-2.2
4,751,140	+				+0.3
4,751,140	+				-0.4
4,751,150	-				-0.7
4,751,160	+				+1.5
4,751,160	+				+0.9
4,751,160	-				-0.0
4,751,160	-				+0.2
4,751,168	-				+0.9
4,751,168	-				-0.7
4,751,168	-				-2.4
4,751,168	-				+0.3
4,751,199	+				+0.5
4,751,199	+				+1.0
4,751,199	+				-0.6
4,751,207	+				-1.0
4,751,207	-				-0.8
4,751,207	-				+0.6
4,751,217	+				+0.7
4,751,221	+				-0.1
4,751,225	-				-2.1
4,751,227	+				+0.2
4,751,235	+		GFF4751	0.10	-0.7
4,751,237	+		GFF4751	0.10	+0.9
4,751,258	+		GFF4751	0.11	+0.6
4,751,266	-		GFF4751	0.12	+1.4
4,751,266	-		GFF4751	0.12	+1.0
4,751,268	+		GFF4751	0.12	-0.4
4,751,268	+		GFF4751	0.12	+0.0
4,751,268	+		GFF4751	0.12	+0.7
4,751,268	+		GFF4751	0.12	-0.6
4,751,268	+		GFF4751	0.12	+0.4
4,751,268	+		GFF4751	0.12	+0.2
4,751,268	+		GFF4751	0.12	-0.8
4,751,268	+		GFF4751	0.12	-2.1
4,751,268	+		GFF4751	0.12	+0.2
4,751,274	+		GFF4751	0.12	-0.3
4,751,276	-		GFF4751	0.13	-0.4
4,751,276	-		GFF4751	0.13	-0.6
4,751,276	-		GFF4751	0.13	+0.6
4,751,276	-		GFF4751	0.13	+0.4
4,751,276	-		GFF4751	0.13	-1.2
4,751,276	-		GFF4751	0.13	-2.3
4,751,287	+		GFF4751	0.13	+0.3
4,751,288	+		GFF4751	0.13	+0.3
4,751,288	+		GFF4751	0.13	+0.5
4,751,295	-		GFF4751	0.14	+1.5
4,751,296	-		GFF4751	0.14	-0.8
4,751,300	-		GFF4751	0.14	-1.2
4,751,314	-		GFF4751	0.15	-0.7
4,751,320	+		GFF4751	0.15	-0.2
4,751,320	+		GFF4751	0.15	-0.4
4,751,330	+		GFF4751	0.16	+0.6
4,751,333	-		GFF4751	0.16	-1.0
4,751,338	+		GFF4751	0.16	-1.0
4,751,348	-		GFF4751	0.17	-2.4
4,751,353	+		GFF4751	0.17	-0.5
4,751,363	+		GFF4751	0.18	-1.7
4,751,363	+		GFF4751	0.18	+0.2
4,751,371	-		GFF4751	0.18	+0.6
4,751,371	-		GFF4751	0.18	-1.5
4,751,373	+		GFF4751	0.18	+0.7
4,751,373	+		GFF4751	0.18	-0.7
4,751,373	+		GFF4751	0.18	-0.0
4,751,373	+		GFF4751	0.18	+0.5
4,751,381	-		GFF4751	0.19	-1.8
4,751,381	-		GFF4751	0.19	-0.1
4,751,383	-		GFF4751	0.19	-0.1
4,751,409	+		GFF4751	0.21	-1.4
4,751,424	+		GFF4751	0.21	-3.0
4,751,442	-		GFF4751	0.23	+0.4
4,751,444	-		GFF4751	0.23	-0.4
4,751,464	+		GFF4751	0.24	-1.3
4,751,472	-		GFF4751	0.24	-1.6
4,751,483	+		GFF4751	0.25	-0.8
4,751,493	+		GFF4751	0.26	+0.8
4,751,493	+		GFF4751	0.26	-1.0
4,751,493	+		GFF4751	0.26	+1.0
4,751,501	-		GFF4751	0.26	-0.5
4,751,501	-		GFF4751	0.26	+0.4
4,751,501	-		GFF4751	0.26	+0.2
4,751,501	-		GFF4751	0.26	-1.3
4,751,501	-		GFF4751	0.26	-1.2
4,751,501	-		GFF4751	0.26	+0.5
4,751,501	-		GFF4751	0.26	-2.0
4,751,513	+		GFF4751	0.27	+0.7
4,751,519	+		GFF4751	0.27	-0.4
4,751,519	+		GFF4751	0.27	+0.2
4,751,527	-		GFF4751	0.28	+0.9
4,751,527	-		GFF4751	0.28	-0.8
4,751,529	+		GFF4751	0.28	+0.3
4,751,532	-		GFF4751	0.28	+0.3
4,751,532	-		GFF4751	0.28	-0.4
4,751,532	-		GFF4751	0.28	-0.4
4,751,542	+		GFF4751	0.29	+0.7
4,751,542	+		GFF4751	0.29	+1.2
4,751,542	+		GFF4751	0.29	-1.1
4,751,542	+		GFF4751	0.29	+0.2
4,751,542	+		GFF4751	0.29	-1.2
4,751,542	+		GFF4751	0.29	-0.3
4,751,542	+		GFF4751	0.29	-1.5
4,751,542	+		GFF4751	0.29	+0.5
4,751,543	+		GFF4751	0.29	+0.7
4,751,543	+		GFF4751	0.29	+0.2
4,751,550	-		GFF4751	0.29	+1.3
4,751,550	-		GFF4751	0.29	-1.0
4,751,605	-		GFF4751	0.32	-0.5
4,751,605	-		GFF4751	0.32	+0.9
4,751,620	+		GFF4751	0.33	-0.2
4,751,635	+		GFF4751	0.34	+0.2
4,751,658	-		GFF4751	0.35	-0.6
4,751,658	-		GFF4751	0.35	-1.0
4,751,663	-		GFF4751	0.36	+0.2
4,751,668	-		GFF4751	0.36	-0.1
4,751,685	-		GFF4751	0.37	-0.8
4,751,695	+		GFF4751	0.38	-1.3
4,751,699	+		GFF4751	0.38	+0.5
4,751,709	+		GFF4751	0.39	+0.9
4,751,709	+		GFF4751	0.39	-0.1
4,751,710	+		GFF4751	0.39	+0.6
4,751,717	+		GFF4751	0.39	-2.2
4,751,717	+		GFF4751	0.39	-2.8
4,751,717	-		GFF4751	0.39	-1.2
4,751,722	+		GFF4751	0.39	-0.3
4,751,722	+		GFF4751	0.39	-1.1
4,751,729	-		GFF4751	0.40	-0.4
4,751,730	-		GFF4751	0.40	-1.4
4,751,730	-		GFF4751	0.40	-0.8
4,751,740	-		GFF4751	0.40	-1.0
4,751,753	+		GFF4751	0.41	-0.6
4,751,779	+		GFF4751	0.43	+1.0
4,751,780	+		GFF4751	0.43	+0.0
4,751,791	+		GFF4751	0.44	+0.2
4,751,793	+		GFF4751	0.44	-0.4
4,751,799	-		GFF4751	0.44	+0.4
4,751,799	-		GFF4751	0.44	+0.3
4,751,804	-		GFF4751	0.44	-1.1
4,751,825	-		GFF4751	0.46	-1.4
4,751,856	-		GFF4751	0.47	-1.8
4,751,856	-		GFF4751	0.47	-1.4
4,751,856	-		GFF4751	0.47	-0.1
4,751,900	-		GFF4751	0.50	-1.7
4,751,944	+		GFF4751	0.53	-1.0
4,751,949	+		GFF4751	0.53	+0.0
4,751,957	-		GFF4751	0.53	-0.1
4,751,967	+		GFF4751	0.54	+0.7
4,751,972	+		GFF4751	0.54	-0.6
4,751,972	+		GFF4751	0.54	-0.8
4,751,972	+		GFF4751	0.54	+0.5
4,751,972	+		GFF4751	0.54	+1.5
4,751,972	+		GFF4751	0.54	-0.4
4,751,975	-		GFF4751	0.55	-1.7
4,751,985	-		GFF4751	0.55	-0.7
4,752,007	+		GFF4751	0.56	-1.1