Strain Fitness in Sphingobium sp. HT1-2 around GFF4744

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,740,949	-		GFF4742	0.86	+1.6
4,740,953	-		GFF4742	0.87	+1.0
4,740,989	+				+0.6
4,740,989	-				+0.4
4,741,039	-				-1.0
4,741,039	-				-0.8
4,741,039	-				+0.2
4,741,053	+				-0.7
4,741,053	+				+0.7
4,741,056	-				-1.9
4,741,056	-				+0.7
4,741,058	+				-1.4
4,741,058	+				-0.2
4,741,058	+				+0.3
4,741,061	-				-0.8
4,741,066	-				-1.1
4,741,066	-				-0.1
4,741,066	-				+1.0
4,741,112	-				+0.5
4,741,112	-				-0.6
4,741,112	-				+0.8
4,741,114	-				+0.5
4,741,114	-				+0.4
4,741,125	+				-1.2
4,741,125	+				-2.3
4,741,125	+				-0.3
4,741,125	+				-1.7
4,741,125	+				+0.3
4,741,125	+				-0.8
4,741,133	-				-0.5
4,741,133	-				+0.0
4,741,133	-				+0.9
4,741,134	-				-0.5
4,741,206	+				+0.9
4,741,243	+				+0.6
4,741,260	+				+0.5
4,741,268	-		GFF4743	0.10	-0.8
4,741,277	+		GFF4743	0.11	+0.8
4,741,287	+		GFF4743	0.13	+0.1
4,741,287	-		GFF4743	0.13	+1.0
4,741,287	-		GFF4743	0.13	-2.2
4,741,304	+		GFF4743	0.15	-0.3
4,741,304	+		GFF4743	0.15	-0.7
4,741,323	+		GFF4743	0.17	+1.1
4,741,358	-		GFF4743	0.22	+0.7
4,741,370	+		GFF4743	0.24	+0.1
4,741,370	+		GFF4743	0.24	-0.2
4,741,375	+		GFF4743	0.24	-1.3
4,741,375	+		GFF4743	0.24	+0.4
4,741,378	-		GFF4743	0.25	-1.3
4,741,383	-		GFF4743	0.26	-0.3
4,741,383	-		GFF4743	0.26	-0.1
4,741,383	-		GFF4743	0.26	+0.5
4,741,383	-		GFF4743	0.26	-1.7
4,741,383	-		GFF4743	0.26	-0.4
4,741,383	-		GFF4743	0.26	-1.3
4,741,429	+		GFF4743	0.32	+0.3
4,741,437	-		GFF4743	0.33	+1.1
4,741,437	-		GFF4743	0.33	+0.4
4,741,443	-		GFF4743	0.34	+0.0
4,741,443	-		GFF4743	0.34	+0.9
4,741,445	+		GFF4743	0.34	+1.7
4,741,452	-		GFF4743	0.35	-1.4
4,741,453	-		GFF4743	0.35	+0.0
4,741,462	+		GFF4743	0.36	+0.6
4,741,462	+		GFF4743	0.36	-1.8
4,741,462	+		GFF4743	0.36	+0.0
4,741,470	-		GFF4743	0.37	-1.2
4,741,474	+		GFF4743	0.38	-1.0
4,741,482	+		GFF4743	0.39	-0.3
4,741,502	-		GFF4743	0.42	-1.0
4,741,516	-		GFF4743	0.43	-0.0
4,741,517	+		GFF4743	0.44	-0.5
4,741,522	+		GFF4743	0.44	-0.1
4,741,530	-		GFF4743	0.45	-0.2
4,741,530	-		GFF4743	0.45	-0.7
4,741,530	-		GFF4743	0.45	+0.3
4,741,542	+		GFF4743	0.47	-0.8
4,741,547	+		GFF4743	0.48	-0.7
4,741,598	+		GFF4743	0.54	+0.7
4,741,604	+		GFF4743	0.55	+0.3
4,741,606	-		GFF4743	0.56	-0.3
4,741,612	-		GFF4743	0.56	-1.0
4,741,631	-		GFF4743	0.59	+1.0
4,741,637	-		GFF4743	0.60	-1.0
4,741,663	-		GFF4743	0.63	-0.0
4,741,674	+		GFF4743	0.65	+0.3
4,741,674	+		GFF4743	0.65	-0.1
4,741,682	-		GFF4743	0.66	-0.2
4,741,702	-		GFF4743	0.68	-1.6
4,741,723	+		GFF4743	0.71	+0.4
4,741,726	-		GFF4743	0.72	+1.1
4,741,799	+		GFF4743	0.81	+0.5
4,741,849	-		GFF4743	0.88	-0.3
4,741,850	+		GFF4743	0.88	+1.7
4,741,894	+				-0.7
4,741,935	-				+0.3
4,741,938	+				+0.0
4,741,938	+				+0.7
4,741,938	+				-1.0
4,741,943	+				-1.1
4,741,943	+				-0.7
4,741,943	+				-1.3
4,741,943	+				+1.2
4,741,945	-				-2.8
4,741,946	-				-0.2
4,741,946	-				+0.5
4,741,948	+				-2.4
4,741,951	-				-0.2
4,741,951	-				+0.6
4,741,951	-				-0.9
4,741,951	-				-1.3
4,741,951	-				+0.3
4,741,951	-				-0.0
4,741,955	+				+0.3
4,741,956	-				-1.7
4,741,961	-				+1.0
4,741,984	+				+1.3
4,741,992	-				-0.3
4,741,998	+				+0.1
4,742,041	-		GFF4744	0.10	-2.7
4,742,058	+		GFF4744	0.12	-0.1
4,742,064	+		GFF4744	0.13	+1.4
4,742,065	-		GFF4744	0.13	-0.1
4,742,072	-		GFF4744	0.14	-0.8
4,742,072	-		GFF4744	0.14	+1.2
4,742,077	-		GFF4744	0.14	+0.6
4,742,096	+		GFF4744	0.17	-0.6
4,742,100	+		GFF4744	0.17	+0.3
4,742,108	-		GFF4744	0.18	+0.6
4,742,108	-		GFF4744	0.18	-0.5
4,742,109	-		GFF4744	0.18	+0.1
4,742,110	+		GFF4744	0.18	-1.1
4,742,167	-		GFF4744	0.24	-1.0
4,742,167	-		GFF4744	0.24	-2.4
4,742,169	+		GFF4744	0.25	+0.3
4,742,172	-		GFF4744	0.25	-1.6
4,742,177	-		GFF4744	0.25	+0.7
4,742,177	-		GFF4744	0.25	-1.0
4,742,182	+		GFF4744	0.26	+0.6
4,742,196	-		GFF4744	0.28	+1.2
4,742,207	+		GFF4744	0.29	-0.3
4,742,244	-		GFF4744	0.33	-0.1
4,742,272	+		GFF4744	0.36	+1.1
4,742,274	-		GFF4744	0.36	+0.3
4,742,288	-		GFF4744	0.38	-2.5
4,742,308	-		GFF4744	0.40	+1.1
4,742,330	-		GFF4744	0.42	+0.2
4,742,372	-		GFF4744	0.47	-1.1
4,742,382	-		GFF4744	0.48	-0.1
4,742,382	-		GFF4744	0.48	+0.0
4,742,391	-		GFF4744	0.49	+0.8
4,742,434	-		GFF4744	0.54	+0.6
4,742,435	+		GFF4744	0.54	+0.4
4,742,438	+		GFF4744	0.54	+0.2
4,742,443	-		GFF4744	0.55	+0.7
4,742,445	+		GFF4744	0.55	-0.8
4,742,475	-		GFF4744	0.58	-2.6
4,742,502	+		GFF4744	0.61	+0.6
4,742,502	+		GFF4744	0.61	+0.3
4,742,507	+		GFF4744	0.62	-0.8
4,742,507	+		GFF4744	0.62	+0.0
4,742,507	+		GFF4744	0.62	-2.1
4,742,510	-		GFF4744	0.62	+0.7
4,742,515	-		GFF4744	0.63	+1.1
4,742,515	-		GFF4744	0.63	-0.1
4,742,515	-		GFF4744	0.63	-0.4
4,742,515	-		GFF4744	0.63	-0.8
4,742,515	-		GFF4744	0.63	-3.4
4,742,525	-		GFF4744	0.64	-0.9
4,742,528	+		GFF4744	0.64	-2.1
4,742,578	-		GFF4744	0.70	-0.7
4,742,578	-		GFF4744	0.70	-0.8
4,742,615	+		GFF4744	0.74	-0.6
4,742,620	-		GFF4744	0.74	-1.1
4,742,631	-		GFF4744	0.75	+0.5
4,742,652	+		GFF4744	0.78	-0.1
4,742,679	+		GFF4744	0.81	-0.1
4,742,702	+		GFF4744	0.83	+1.7
4,742,702	+		GFF4744	0.83	+0.6
4,742,709	+		GFF4744	0.84	+0.2
4,742,719	+		GFF4744	0.85	-0.6
4,742,736	+		GFF4744	0.87	-2.0
4,742,736	+		GFF4744	0.87	+0.6
4,742,736	+		GFF4744	0.87	-0.6
4,742,736	+		GFF4744	0.87	-0.7
4,742,744	-		GFF4744	0.88	-0.1
4,742,744	-		GFF4744	0.88	-0.2
4,742,744	-		GFF4744	0.88	-0.3
4,742,744	-		GFF4744	0.88	-0.3
4,742,744	-		GFF4744	0.88	-2.1
4,742,744	-		GFF4744	0.88	+0.3
4,742,744	-		GFF4744	0.88	+0.2
4,742,744	-		GFF4744	0.88	+0.3
4,742,746	+		GFF4744	0.88	-0.6
4,742,754	-		GFF4744	0.89	+0.2
4,742,793	-				+1.3
4,742,814	+				-0.1
4,742,838	-				+0.5
4,742,849	+				-1.1
4,742,857	-				-1.9
4,742,911	+				-0.3
4,742,919	-				+0.0
4,742,927	+				-1.0
4,742,931	+				-0.5
4,742,939	-				-0.5
4,742,939	-				+0.3
4,742,939	-				-1.7
4,742,957	+				-0.3
4,742,989	-				+1.3
4,743,020	+				-1.4
4,743,048	-		GFF4745	0.11	+1.0
4,743,067	-		GFF4745	0.12	-2.0
4,743,069	+		GFF4745	0.12	-0.3
4,743,131	+		GFF4745	0.16	-0.0
4,743,164	+		GFF4745	0.17	-0.8
4,743,172	-		GFF4745	0.18	+0.4
4,743,182	+		GFF4745	0.18	-3.1
4,743,214	-		GFF4745	0.20	-0.1
4,743,262	+		GFF4745	0.23	-0.8
4,743,280	-		GFF4745	0.24	-0.8
4,743,303	+		GFF4745	0.25	+0.7
4,743,303	+		GFF4745	0.25	+1.6
4,743,311	-		GFF4745	0.26	-2.6
4,743,311	-		GFF4745	0.26	+0.3
4,743,328	-		GFF4745	0.27	-0.9
4,743,331	-		GFF4745	0.27	+1.6
4,743,337	+		GFF4745	0.27	+0.1
4,743,337	+		GFF4745	0.27	-2.3
4,743,345	-		GFF4745	0.28	+0.2
4,743,395	+		GFF4745	0.30	+0.4
4,743,403	-		GFF4745	0.31	-0.8
4,743,414	+		GFF4745	0.31	-0.1
4,743,414	+		GFF4745	0.31	-0.7
4,743,414	+		GFF4745	0.31	+0.4
4,743,422	-		GFF4745	0.32	+1.1
4,743,424	+		GFF4745	0.32	+0.4
4,743,424	+		GFF4745	0.32	-0.7
4,743,432	-		GFF4745	0.32	-2.5
4,743,449	+		GFF4745	0.33	-2.4
4,743,457	-		GFF4745	0.34	-0.7
4,743,469	-		GFF4745	0.35	-0.7
4,743,471	+		GFF4745	0.35	-0.6
4,743,479	-		GFF4745	0.35	+0.1
4,743,486	-		GFF4745	0.35	-2.1
4,743,501	+		GFF4745	0.36	-1.4
4,743,501	-		GFF4745	0.36	-0.7
4,743,509	-		GFF4745	0.37	-0.7
4,743,536	-		GFF4745	0.38	-0.7
4,743,558	-		GFF4745	0.39	+0.5
4,743,573	+		GFF4745	0.40	-0.7
4,743,575	+		GFF4745	0.40	-0.3
4,743,583	-		GFF4745	0.41	+0.2
4,743,598	-		GFF4745	0.42	-0.3
4,743,609	+		GFF4745	0.42	+1.0
4,743,681	-		GFF4745	0.46	+0.1
4,743,686	-		GFF4745	0.47	-0.7
4,743,727	-		GFF4745	0.49	-0.1
4,743,729	+		GFF4745	0.49	+0.3
4,743,729	+		GFF4745	0.49	-0.1
4,743,731	+		GFF4745	0.49	+0.5
4,743,732	-		GFF4745	0.49	-0.9
4,743,733	-		GFF4745	0.49	+0.4
4,743,737	-		GFF4745	0.49	-1.8
4,743,737	-		GFF4745	0.49	-2.7
4,743,762	-		GFF4745	0.51	-1.3
4,743,764	+		GFF4745	0.51	-1.8
4,743,764	+		GFF4745	0.51	-1.0
4,743,772	-		GFF4745	0.51	-0.5
4,743,772	-		GFF4745	0.51	-0.6
4,743,773	+		GFF4745	0.51	-0.8
4,743,788	+		GFF4745	0.52	+1.2
4,743,793	+		GFF4745	0.53	+1.0
4,743,793	+		GFF4745	0.53	-0.3
4,743,796	-		GFF4745	0.53	+0.6
4,743,797	+		GFF4745	0.53	+0.5
4,743,799	+		GFF4745	0.53	+0.7
4,743,812	-		GFF4745	0.54	+0.6
4,743,844	-		GFF4745	0.55	-0.8