Strain Fitness in Sphingobium sp. HT1-2 around GFF4742

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,739,183	+		GFF4739	0.44	-2.6
4,739,191	-		GFF4739	0.46	+0.4
4,739,191	-		GFF4739	0.46	-1.4
4,739,193	+		GFF4739	0.47	-1.2
4,739,228	+		GFF4739	0.58	-0.4
4,739,237	+		GFF4739	0.61	-1.4
4,739,251	-		GFF4739	0.66	-0.5
4,739,315	-		GFF4739	0.87	+0.0
4,739,322	+		GFF4739	0.89	-0.3
4,739,322	+		GFF4739	0.89	-1.3
4,739,362	-				-1.7
4,739,364	+				-0.4
4,739,372	-				-1.0
4,739,478	+		GFF4740	0.25	-2.2
4,739,480	+		GFF4740	0.26	+1.0
4,739,513	+		GFF4740	0.37	-0.6
4,739,533	+		GFF4740	0.43	-0.2
4,739,538	+		GFF4740	0.45	+0.8
4,739,541	-		GFF4740	0.46	+0.2
4,739,565	+		GFF4740	0.54	-1.1
4,739,565	+		GFF4740	0.54	-1.5
4,739,567	+		GFF4740	0.55	+0.3
4,739,567	+		GFF4740	0.55	-0.2
4,739,568	-		GFF4740	0.55	+0.0
4,739,573	-		GFF4740	0.57	-0.1
4,739,573	-		GFF4740	0.57	-2.0
4,739,579	+		GFF4740	0.59	-0.7
4,739,585	-		GFF4740	0.61	-1.4
4,739,585	-		GFF4740	0.61	-0.3
4,739,585	-		GFF4740	0.61	-0.4
4,739,585	-		GFF4740	0.61	+0.7
4,739,585	-		GFF4740	0.61	+0.6
4,739,585	-		GFF4740	0.61	+0.7
4,739,586	-		GFF4740	0.61	+1.1
4,739,588	+		GFF4740	0.62	+0.0
4,739,588	+		GFF4740	0.62	-0.4
4,739,588	+		GFF4740	0.62	-1.2
4,739,588	+		GFF4740	0.62	-0.8
4,739,588	+		GFF4740	0.62	+0.6
4,739,596	-		GFF4740	0.64	+0.3
4,739,596	-		GFF4740	0.64	-1.0
4,739,596	-		GFF4740	0.64	-0.3
4,739,596	-		GFF4740	0.64	+0.2
4,739,596	-		GFF4740	0.64	+0.7
4,739,596	-		GFF4740	0.64	+0.3
4,739,601	-		GFF4740	0.66	+0.5
4,739,601	-		GFF4740	0.66	-1.5
4,739,615	+		GFF4740	0.71	-2.1
4,739,644	+		GFF4740	0.80	-0.5
4,739,650	+		GFF4740	0.82	-0.7
4,739,658	-		GFF4740	0.85	-0.6
4,739,672	+		GFF4740	0.90	-1.7
4,739,678	+				-1.7
4,739,680	-				-0.4
4,739,682	+				+0.5
4,739,713	-				+0.8
4,739,713	-				+0.6
4,739,723	-				-2.0
4,739,746	-				+1.0
4,739,748	-				-0.0
4,739,752	-				-0.4
4,739,757	+				+0.9
4,739,759	+				-0.3
4,739,759	+				+0.0
4,739,759	+				+0.7
4,739,759	+				+0.0
4,739,759	+				+0.6
4,739,759	+				-0.8
4,739,759	+				-0.8
4,739,759	+				+0.6
4,739,759	+				+0.3
4,739,759	+				+1.0
4,739,765	-		GFF4741	0.11	-1.7
4,739,767	-		GFF4741	0.12	+0.3
4,739,767	-		GFF4741	0.12	-1.2
4,739,767	-		GFF4741	0.12	-1.1
4,739,767	-		GFF4741	0.12	+1.3
4,739,767	-		GFF4741	0.12	+1.2
4,739,767	-		GFF4741	0.12	-0.2
4,739,767	-		GFF4741	0.12	+0.1
4,739,767	-		GFF4741	0.12	+0.1
4,739,767	-		GFF4741	0.12	+0.2
4,739,767	-		GFF4741	0.12	-0.6
4,739,767	-		GFF4741	0.12	-1.1
4,739,767	-		GFF4741	0.12	-1.4
4,739,767	-		GFF4741	0.12	-0.3
4,739,767	-		GFF4741	0.12	-0.1
4,739,783	+		GFF4741	0.15	-0.7
4,739,791	-		GFF4741	0.17	+0.6
4,739,803	+		GFF4741	0.20	-2.9
4,739,806	-		GFF4741	0.21	+0.4
4,739,811	+		GFF4741	0.22	+0.9
4,739,811	-		GFF4741	0.22	+0.4
4,739,811	-		GFF4741	0.22	+0.6
4,739,811	-		GFF4741	0.22	-1.1
4,739,811	-		GFF4741	0.22	+0.5
4,739,811	-		GFF4741	0.22	+0.5
4,739,819	-		GFF4741	0.24	+1.3
4,739,846	+		GFF4741	0.30	-1.0
4,739,850	+		GFF4741	0.31	-0.5
4,739,850	+		GFF4741	0.31	+0.7
4,739,850	+		GFF4741	0.31	-0.8
4,739,850	+		GFF4741	0.31	+1.0
4,739,850	+		GFF4741	0.31	+0.1
4,739,850	+		GFF4741	0.31	-0.0
4,739,851	+		GFF4741	0.31	+1.4
4,739,851	+		GFF4741	0.31	+0.4
4,739,858	-		GFF4741	0.33	+0.5
4,739,858	-		GFF4741	0.33	-0.6
4,739,858	-		GFF4741	0.33	-1.9
4,739,858	-		GFF4741	0.33	-1.4
4,739,859	-		GFF4741	0.33	-1.1
4,739,859	-		GFF4741	0.33	-0.1
4,739,887	+		GFF4741	0.40	-0.5
4,739,891	+		GFF4741	0.41	-1.5
4,739,894	-		GFF4741	0.42	-0.0
4,739,909	+		GFF4741	0.45	-2.7
4,739,917	-		GFF4741	0.47	+0.9
4,739,917	-		GFF4741	0.47	+0.0
4,739,917	-		GFF4741	0.47	-0.1
4,739,918	+		GFF4741	0.47	-0.4
4,740,010	+		GFF4741	0.69	-0.1
4,740,038	-		GFF4741	0.75	-1.1
4,740,039	+		GFF4741	0.76	+0.1
4,740,049	+		GFF4741	0.78	+0.9
4,740,057	-		GFF4741	0.80	+0.4
4,740,057	-		GFF4741	0.80	-0.7
4,740,062	-		GFF4741	0.81	-0.3
4,740,069	+		GFF4741	0.83	-0.8
4,740,069	+		GFF4741	0.83	-0.1
4,740,072	-		GFF4741	0.83	-1.8
4,740,079	+		GFF4741	0.85	-2.0
4,740,087	-		GFF4741	0.87	-0.0
4,740,087	-		GFF4741	0.87	-1.1
4,740,108	+				+0.9
4,740,108	+				-0.1
4,740,108	+				+0.5
4,740,127	+				-0.7
4,740,127	+				-2.0
4,740,127	+				+1.2
4,740,135	-				-1.0
4,740,135	-				-0.7
4,740,135	-				-1.2
4,740,135	-				+0.4
4,740,135	-				+0.0
4,740,135	-				+1.3
4,740,146	-				-0.4
4,740,149	+				+0.8
4,740,149	+				-1.1
4,740,149	+				+1.0
4,740,157	-				-0.4
4,740,157	-				+0.2
4,740,157	-				-0.5
4,740,157	-				+0.4
4,740,157	-				+1.2
4,740,168	+				-0.1
4,740,168	+				-1.6
4,740,168	+				-0.1
4,740,168	+				-0.1
4,740,176	-				+0.0
4,740,179	+				-0.8
4,740,179	+				-0.1
4,740,179	+				-1.1
4,740,187	-				+0.5
4,740,187	-				+0.0
4,740,187	-				+0.2
4,740,187	-				-0.8
4,740,187	-				-0.2
4,740,187	-				-1.2
4,740,199	-				-0.1
4,740,199	-				+0.6
4,740,224	-				-1.2
4,740,232	+				+0.3
4,740,232	+				-0.6
4,740,233	+				-2.8
4,740,233	+				+0.5
4,740,241	-				+0.3
4,740,271	+		GFF4742	0.13	-2.3
4,740,279	-		GFF4742	0.14	+0.3
4,740,365	-		GFF4742	0.23	-1.6
4,740,414	-		GFF4742	0.28	-0.7
4,740,424	-		GFF4742	0.29	-0.3
4,740,449	+		GFF4742	0.32	+0.8
4,740,457	-		GFF4742	0.33	-0.5
4,740,472	-		GFF4742	0.35	-0.1
4,740,474	+		GFF4742	0.35	-1.1
4,740,474	+		GFF4742	0.35	-0.1
4,740,482	-		GFF4742	0.36	-1.1
4,740,483	+		GFF4742	0.36	-1.0
4,740,508	+		GFF4742	0.39	-0.8
4,740,529	-		GFF4742	0.41	-1.7
4,740,529	-		GFF4742	0.41	+0.3
4,740,561	-		GFF4742	0.44	-2.7
4,740,569	+		GFF4742	0.45	+0.7
4,740,577	-		GFF4742	0.46	+0.4
4,740,585	+		GFF4742	0.47	+0.9
4,740,622	+		GFF4742	0.51	-0.2
4,740,622	+		GFF4742	0.51	-3.4
4,740,630	-		GFF4742	0.52	-0.1
4,740,630	-		GFF4742	0.52	+1.3
4,740,632	+		GFF4742	0.52	+1.3
4,740,632	+		GFF4742	0.52	+0.7
4,740,632	+		GFF4742	0.52	-0.4
4,740,632	+		GFF4742	0.52	-1.4
4,740,637	-		GFF4742	0.52	-1.7
4,740,640	-		GFF4742	0.53	+0.6
4,740,640	-		GFF4742	0.53	-0.6
4,740,640	-		GFF4742	0.53	+0.2
4,740,644	+		GFF4742	0.53	-0.4
4,740,644	+		GFF4742	0.53	+0.2
4,740,644	+		GFF4742	0.53	-0.8
4,740,652	-		GFF4742	0.54	-0.2
4,740,672	+		GFF4742	0.56	-0.8
4,740,675	-		GFF4742	0.57	+1.0
4,740,675	-		GFF4742	0.57	+0.2
4,740,700	+		GFF4742	0.59	-1.4
4,740,717	+		GFF4742	0.61	+0.7
4,740,717	+		GFF4742	0.61	-0.6
4,740,725	-		GFF4742	0.62	+0.5
4,740,725	-		GFF4742	0.62	-0.8
4,740,746	-		GFF4742	0.64	-0.7
4,740,748	+		GFF4742	0.64	+0.2
4,740,759	+		GFF4742	0.66	+0.1
4,740,796	-		GFF4742	0.70	+0.1
4,740,798	+		GFF4742	0.70	-2.0
4,740,798	-		GFF4742	0.70	-0.5
4,740,813	+		GFF4742	0.71	-0.0
4,740,814	-		GFF4742	0.72	-0.6
4,740,825	+		GFF4742	0.73	+0.5
4,740,825	+		GFF4742	0.73	+0.7
4,740,825	+		GFF4742	0.73	+0.4
4,740,833	-		GFF4742	0.74	-1.5
4,740,838	+		GFF4742	0.74	-0.2
4,740,846	-		GFF4742	0.75	+0.9
4,740,913	-		GFF4742	0.82	+0.8
4,740,923	+		GFF4742	0.83	-0.7
4,740,923	+		GFF4742	0.83	-0.3
4,740,923	+		GFF4742	0.83	+0.3
4,740,931	+		GFF4742	0.84	-1.2
4,740,931	-		GFF4742	0.84	-0.0
4,740,931	-		GFF4742	0.84	-1.7
4,740,939	-		GFF4742	0.85	-1.0
4,740,941	+		GFF4742	0.85	+0.7
4,740,949	-		GFF4742	0.86	+1.6
4,740,953	-		GFF4742	0.87	+1.0
4,740,989	+				+0.6
4,740,989	-				+0.4
4,741,039	-				-1.0
4,741,039	-				-0.8
4,741,039	-				+0.2
4,741,053	+				-0.7
4,741,053	+				+0.7
4,741,056	-				-1.9
4,741,056	-				+0.7
4,741,058	+				-1.4
4,741,058	+				-0.2
4,741,058	+				+0.3
4,741,061	-				-0.8
4,741,066	-				-1.1
4,741,066	-				-0.1
4,741,066	-				+1.0
4,741,112	-				+0.5
4,741,112	-				-0.6
4,741,112	-				+0.8
4,741,114	-				+0.5
4,741,114	-				+0.4
4,741,125	+				-1.2
4,741,125	+				-2.3
4,741,125	+				-0.3
4,741,125	+				-1.7
4,741,125	+				+0.3
4,741,125	+				-0.8
4,741,133	-				-0.5
4,741,133	-				+0.0
4,741,133	-				+0.9
4,741,134	-				-0.5
4,741,206	+				+0.9
4,741,243	+				+0.6
4,741,260	+				+0.5
4,741,268	-		GFF4743	0.10	-0.8
4,741,277	+		GFF4743	0.11	+0.8
4,741,287	+		GFF4743	0.13	+0.1
4,741,287	-		GFF4743	0.13	+1.0
4,741,287	-		GFF4743	0.13	-2.2
4,741,304	+		GFF4743	0.15	-0.3
4,741,304	+		GFF4743	0.15	-0.7
4,741,323	+		GFF4743	0.17	+1.1
4,741,358	-		GFF4743	0.22	+0.7
4,741,370	+		GFF4743	0.24	+0.1
4,741,370	+		GFF4743	0.24	-0.2
4,741,375	+		GFF4743	0.24	-1.3
4,741,375	+		GFF4743	0.24	+0.4
4,741,378	-		GFF4743	0.25	-1.3
4,741,383	-		GFF4743	0.26	-0.3
4,741,383	-		GFF4743	0.26	-0.1
4,741,383	-		GFF4743	0.26	+0.5
4,741,383	-		GFF4743	0.26	-1.7
4,741,383	-		GFF4743	0.26	-0.4
4,741,383	-		GFF4743	0.26	-1.3
4,741,429	+		GFF4743	0.32	+0.3
4,741,437	-		GFF4743	0.33	+1.1
4,741,437	-		GFF4743	0.33	+0.4
4,741,443	-		GFF4743	0.34	+0.0
4,741,443	-		GFF4743	0.34	+0.9
4,741,445	+		GFF4743	0.34	+1.7
4,741,452	-		GFF4743	0.35	-1.4
4,741,453	-		GFF4743	0.35	+0.0
4,741,462	+		GFF4743	0.36	+0.6
4,741,462	+		GFF4743	0.36	-1.8
4,741,462	+		GFF4743	0.36	+0.0
4,741,470	-		GFF4743	0.37	-1.2
4,741,474	+		GFF4743	0.38	-1.0
4,741,482	+		GFF4743	0.39	-0.3
4,741,502	-		GFF4743	0.42	-1.0
4,741,516	-		GFF4743	0.43	-0.0
4,741,517	+		GFF4743	0.44	-0.5
4,741,522	+		GFF4743	0.44	-0.1
4,741,530	-		GFF4743	0.45	-0.2
4,741,530	-		GFF4743	0.45	-0.7
4,741,530	-		GFF4743	0.45	+0.3
4,741,542	+		GFF4743	0.47	-0.8
4,741,547	+		GFF4743	0.48	-0.7
4,741,598	+		GFF4743	0.54	+0.7
4,741,604	+		GFF4743	0.55	+0.3
4,741,606	-		GFF4743	0.56	-0.3
4,741,612	-		GFF4743	0.56	-1.0
4,741,631	-		GFF4743	0.59	+1.0
4,741,637	-		GFF4743	0.60	-1.0
4,741,663	-		GFF4743	0.63	-0.0
4,741,674	+		GFF4743	0.65	+0.3
4,741,674	+		GFF4743	0.65	-0.1
4,741,682	-		GFF4743	0.66	-0.2
4,741,702	-		GFF4743	0.68	-1.6
4,741,723	+		GFF4743	0.71	+0.4
4,741,726	-		GFF4743	0.72	+1.1
4,741,799	+		GFF4743	0.81	+0.5
4,741,849	-		GFF4743	0.88	-0.3
4,741,850	+		GFF4743	0.88	+1.7
4,741,894	+				-0.7
4,741,935	-				+0.3
4,741,938	+				+0.0
4,741,938	+				+0.7
4,741,938	+				-1.0
4,741,943	+				-1.1
4,741,943	+				-0.7
4,741,943	+				-1.3
4,741,943	+				+1.2
4,741,945	-				-2.8
4,741,946	-				-0.2
4,741,946	-				+0.5
4,741,948	+				-2.4
4,741,951	-				-0.2
4,741,951	-				+0.6
4,741,951	-				-0.9
4,741,951	-				-1.3
4,741,951	-				+0.3
4,741,951	-				-0.0
4,741,955	+				+0.3
4,741,956	-				-1.7
4,741,961	-				+1.0
4,741,984	+				+1.3
4,741,992	-				-0.3
4,741,998	+				+0.1
4,742,041	-		GFF4744	0.10	-2.7
4,742,058	+		GFF4744	0.12	-0.1
4,742,064	+		GFF4744	0.13	+1.4
4,742,065	-		GFF4744	0.13	-0.1
4,742,072	-		GFF4744	0.14	-0.8
4,742,072	-		GFF4744	0.14	+1.2
4,742,077	-		GFF4744	0.14	+0.6