Strain Fitness in Sphingobium sp. HT1-2 around GFF4728

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,725,289	-				-2.6
4,725,312	+				-1.9
4,725,316	-				+0.6
4,725,322	+				+0.0
4,725,332	+		GFF4727	0.12	+0.3
4,725,340	-		GFF4727	0.13	+0.8
4,725,340	-		GFF4727	0.13	+0.4
4,725,366	+		GFF4727	0.17	+0.3
4,725,377	+		GFF4727	0.19	-2.8
4,725,377	+		GFF4727	0.19	-0.3
4,725,379	-		GFF4727	0.20	-0.4
4,725,385	-		GFF4727	0.21	+0.9
4,725,390	-		GFF4727	0.21	+1.7
4,725,395	-		GFF4727	0.22	-0.4
4,725,395	-		GFF4727	0.22	+0.1
4,725,400	-		GFF4727	0.23	-1.1
4,725,474	-		GFF4727	0.36	-0.0
4,725,474	-		GFF4727	0.36	-0.4
4,725,474	-		GFF4727	0.36	+0.1
4,725,499	+		GFF4727	0.40	+0.2
4,725,499	+		GFF4727	0.40	-1.2
4,725,499	+		GFF4727	0.40	+1.4
4,725,499	+		GFF4727	0.40	-0.2
4,725,499	+		GFF4727	0.40	-0.3
4,725,499	+		GFF4727	0.40	-0.7
4,725,501	-		GFF4727	0.40	-1.3
4,725,507	-		GFF4727	0.41	-1.1
4,725,507	-		GFF4727	0.41	+1.2
4,725,547	+		GFF4727	0.48	+0.7
4,725,558	+		GFF4727	0.50	+0.3
4,725,587	-		GFF4727	0.55	+0.8
4,725,596	+		GFF4727	0.56	-0.2
4,725,596	+		GFF4727	0.56	-0.2
4,725,596	+		GFF4727	0.56	+0.4
4,725,596	+		GFF4727	0.56	-0.1
4,725,596	+		GFF4727	0.56	+0.3
4,725,596	+		GFF4727	0.56	-0.7
4,725,602	-		GFF4727	0.57	+0.6
4,725,604	-		GFF4727	0.58	+1.5
4,725,604	-		GFF4727	0.58	+0.8
4,725,604	-		GFF4727	0.58	+1.1
4,725,604	-		GFF4727	0.58	+0.6
4,725,604	-		GFF4727	0.58	+0.3
4,725,614	-		GFF4727	0.60	-0.2
4,725,651	-		GFF4727	0.66	+0.2
4,725,656	-		GFF4727	0.67	-0.2
4,725,670	-		GFF4727	0.69	-0.4
4,725,689	+		GFF4727	0.72	-0.8
4,725,689	+		GFF4727	0.72	+0.5
4,725,689	+		GFF4727	0.72	-2.7
4,725,697	-		GFF4727	0.74	-0.0
4,725,697	-		GFF4727	0.74	+0.9
4,725,700	+		GFF4727	0.74	-0.1
4,725,701	+		GFF4727	0.74	-0.1
4,725,707	-		GFF4727	0.75	-0.8
4,725,711	+		GFF4727	0.76	+0.4
4,725,711	+		GFF4727	0.76	-0.2
4,725,715	-		GFF4727	0.77	+0.1
4,725,715	-		GFF4727	0.77	-0.1
4,725,717	+		GFF4727	0.77	-0.2
4,725,717	+		GFF4727	0.77	-0.5
4,725,717	+		GFF4727	0.77	-0.8
4,725,719	-		GFF4727	0.77	+0.8
4,725,725	-		GFF4727	0.78	+0.7
4,725,725	-		GFF4727	0.78	-2.3
4,725,740	+		GFF4727	0.81	+0.4
4,725,760	-		GFF4727	0.84	+0.5
4,725,777	+		GFF4727	0.87	-1.7
4,725,797	-				-0.1
4,725,828	-				+0.9
4,725,834	+				-0.9
4,725,840	+				+0.3
4,725,848	-				+0.5
4,725,848	-				-1.0
4,725,868	-				+0.3
4,725,868	-				-0.6
4,725,893	-				-0.2
4,725,893	-				-0.0
4,725,903	+				-0.5
4,725,928	-				-0.8
4,725,939	-				+1.1
4,725,981	+				+0.4
4,726,000	-				-0.7
4,726,026	+				-0.4
4,726,034	-				-0.6
4,726,034	-				+1.2
4,726,034	-				+0.2
4,726,110	-				+0.2
4,726,110	-				-1.3
4,726,117	+				-0.6
4,726,118	+				-0.6
4,726,155	+				-0.6
4,726,157	+				-0.8
4,726,160	-				+0.2
4,726,187	-				-0.8
4,726,216	+				-1.1
4,726,285	-				-2.4
4,726,292	-				+0.7
4,726,296	-				-1.3
4,726,327	+		GFF4728	0.11	+0.5
4,726,333	-		GFF4728	0.13	-1.1
4,726,335	+		GFF4728	0.13	-1.6
4,726,335	-		GFF4728	0.13	+0.8
4,726,335	-		GFF4728	0.13	+0.2
4,726,375	-		GFF4728	0.23	-0.6
4,726,387	+		GFF4728	0.26	-2.1
4,726,460	+		GFF4728	0.45	-0.7
4,726,460	+		GFF4728	0.45	-1.5
4,726,468	-		GFF4728	0.47	-0.8
4,726,469	-		GFF4728	0.47	-0.5
4,726,469	-		GFF4728	0.47	-1.8
4,726,471	+		GFF4728	0.47	-0.4
4,726,499	+		GFF4728	0.54	+0.5
4,726,518	-		GFF4728	0.59	+1.3
4,726,522	+		GFF4728	0.60	+1.1
4,726,527	+		GFF4728	0.61	-1.7
4,726,527	+		GFF4728	0.61	-0.2
4,726,527	+		GFF4728	0.61	-0.9
4,726,527	+		GFF4728	0.61	+0.2
4,726,527	+		GFF4728	0.61	-1.0
4,726,527	+		GFF4728	0.61	-1.3
4,726,527	+		GFF4728	0.61	+1.0
4,726,527	+		GFF4728	0.61	+0.7
4,726,534	+		GFF4728	0.63	-1.8
4,726,535	-		GFF4728	0.63	+0.5
4,726,535	-		GFF4728	0.63	-1.4
4,726,535	-		GFF4728	0.63	+0.4
4,726,535	-		GFF4728	0.63	-0.4
4,726,535	-		GFF4728	0.63	-0.8
4,726,557	+		GFF4728	0.69	-0.0
4,726,571	+		GFF4728	0.72	-0.5
4,726,571	+		GFF4728	0.72	+0.7
4,726,571	+		GFF4728	0.72	-2.1
4,726,571	+		GFF4728	0.72	-2.3
4,726,571	+		GFF4728	0.72	-1.0
4,726,571	+		GFF4728	0.72	+0.3
4,726,571	-		GFF4728	0.72	+0.4
4,726,576	+		GFF4728	0.73	+0.7
4,726,576	+		GFF4728	0.73	-1.6
4,726,579	-		GFF4728	0.74	+0.2
4,726,579	-		GFF4728	0.74	+0.3
4,726,579	-		GFF4728	0.74	+0.7
4,726,579	-		GFF4728	0.74	-2.3
4,726,579	-		GFF4728	0.74	+1.0
4,726,579	-		GFF4728	0.74	-1.1
4,726,579	-		GFF4728	0.74	+0.0
4,726,579	-		GFF4728	0.74	-0.3
4,726,579	-		GFF4728	0.74	-0.3
4,726,579	-		GFF4728	0.74	-0.2
4,726,579	-		GFF4728	0.74	+0.0
4,726,579	-		GFF4728	0.74	-0.7
4,726,584	-		GFF4728	0.75	+0.5
4,726,584	-		GFF4728	0.75	+1.0
4,726,589	-		GFF4728	0.77	-0.2
4,726,593	+		GFF4728	0.78	+0.2
4,726,601	-		GFF4728	0.80	-1.7
4,726,629	-		GFF4728	0.87	-0.6
4,726,629	-		GFF4728	0.87	+1.0
4,726,693	+				-2.0
4,726,747	+				-1.2
4,726,747	+				-1.5
4,726,748	+				+0.2
4,726,748	+				+0.8
4,726,752	+				-1.0
4,726,761	-				+0.3
4,726,761	-				+1.0
4,726,761	-				+0.6
4,726,794	-				-1.7
4,726,822	-				-1.3
4,726,825	-				-0.9
4,726,859	-		GFF4729	0.10	-2.2
4,726,859	-		GFF4729	0.10	+0.1
4,726,917	+		GFF4729	0.14	+0.4
4,726,932	+		GFF4729	0.15	-0.1
4,726,932	+		GFF4729	0.15	-1.8
4,726,932	+		GFF4729	0.15	-1.3
4,726,940	-		GFF4729	0.16	-2.5
4,726,940	-		GFF4729	0.16	-1.0
4,726,940	-		GFF4729	0.16	-0.3
4,726,945	+		GFF4729	0.16	-0.3
4,726,945	+		GFF4729	0.16	+1.5
4,726,946	+		GFF4729	0.16	+0.6
4,726,960	+		GFF4729	0.17	+1.5
4,726,965	+		GFF4729	0.17	+0.7
4,727,007	+		GFF4729	0.20	-0.7
4,727,013	-		GFF4729	0.20	-1.7
4,727,022	+		GFF4729	0.21	-0.1
4,727,043	+		GFF4729	0.22	-0.1
4,727,082	+		GFF4729	0.25	+0.8
4,727,091	-		GFF4729	0.25	+0.5
4,727,105	+		GFF4729	0.26	-0.2
4,727,106	-		GFF4729	0.26	+0.7
4,727,113	-		GFF4729	0.26	-0.1
4,727,113	-		GFF4729	0.26	+0.4
4,727,113	-		GFF4729	0.26	+0.1
4,727,142	+		GFF4729	0.28	+0.6
4,727,144	+		GFF4729	0.28	+0.5
4,727,150	-		GFF4729	0.29	-2.4
4,727,150	-		GFF4729	0.29	-1.2
4,727,163	+		GFF4729	0.30	-0.5
4,727,163	+		GFF4729	0.30	+0.7
4,727,164	-		GFF4729	0.30	-0.2
4,727,171	-		GFF4729	0.30	-2.3
4,727,171	-		GFF4729	0.30	-0.8
4,727,171	-		GFF4729	0.30	+0.2
4,727,173	+		GFF4729	0.30	-1.4
4,727,181	-		GFF4729	0.31	-2.1
4,727,188	+		GFF4729	0.31	-0.8
4,727,232	+		GFF4729	0.34	+0.6
4,727,232	+		GFF4729	0.34	-0.2
4,727,276	-		GFF4729	0.37	-0.5
4,727,308	+		GFF4729	0.39	+0.4
4,727,313	+		GFF4729	0.39	-0.7
4,727,357	+		GFF4729	0.42	+1.2
4,727,366	-		GFF4729	0.43	+0.2
4,727,392	+		GFF4729	0.44	+0.5
4,727,400	+		GFF4729	0.45	-0.8
4,727,427	+		GFF4729	0.46	+0.9
4,727,465	+		GFF4729	0.49	-1.2
4,727,465	+		GFF4729	0.49	+1.3
4,727,465	+		GFF4729	0.49	+0.5
4,727,465	+		GFF4729	0.49	-0.1
4,727,473	-		GFF4729	0.49	+0.0
4,727,496	-		GFF4729	0.51	+0.4
4,727,496	-		GFF4729	0.51	-0.1
4,727,523	-		GFF4729	0.52	-1.1
4,727,537	+		GFF4729	0.53	+1.1
4,727,538	+		GFF4729	0.53	-0.5
4,727,543	+		GFF4729	0.54	+0.2
4,727,543	+		GFF4729	0.54	-0.8
4,727,546	-		GFF4729	0.54	-0.4
4,727,551	-		GFF4729	0.54	+0.2
4,727,575	-		GFF4729	0.56	-0.1
4,727,575	-		GFF4729	0.56	+0.0
4,727,575	-		GFF4729	0.56	+0.2
4,727,594	-		GFF4729	0.57	-0.4
4,727,594	-		GFF4729	0.57	-0.8
4,727,594	-		GFF4729	0.57	-0.8
4,727,596	-		GFF4729	0.57	-0.4
4,727,613	-		GFF4729	0.58	-0.5
4,727,623	-		GFF4729	0.59	-0.8
4,727,623	-		GFF4729	0.59	+0.5