Strain Fitness in Sphingobium sp. HT1-2 around GFF472

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF471 and GFF472 are separated by 18 nucleotidesGFF472 and GFF473 are separated by 85 nucleotides GFF471 - Uncharacterized amino acid permease, GabP family, at 471,444 to 472,742 GFF471 GFF472 - Chaperone protein DnaJ, at 472,761 to 473,918 GFF472 GFF473 - Chaperone protein DnaK, at 474,004 to 475,902 GFF473 Position (kb) 472 473 474Strain fitness (log2 ratio) -2 -1 0 1at 471.783 kb on + strand, within GFF471at 471.793 kb on + strand, within GFF471at 471.793 kb on + strand, within GFF471at 471.793 kb on + strand, within GFF471at 471.793 kb on + strand, within GFF471at 471.801 kb on - strand, within GFF471at 471.801 kb on - strand, within GFF471at 471.801 kb on - strand, within GFF471at 471.801 kb on - strand, within GFF471at 471.801 kb on - strand, within GFF471at 471.803 kb on + strand, within GFF471at 471.811 kb on - strand, within GFF471at 471.819 kb on + strand, within GFF471at 471.819 kb on + strand, within GFF471at 471.833 kb on + strand, within GFF471at 471.833 kb on + strand, within GFF471at 471.834 kb on + strand, within GFF471at 471.848 kb on + strand, within GFF471at 471.866 kb on - strand, within GFF471at 471.888 kb on - strand, within GFF471at 471.920 kb on + strand, within GFF471at 471.935 kb on + strand, within GFF471at 471.940 kb on + strand, within GFF471at 471.943 kb on - strand, within GFF471at 471.943 kb on - strand, within GFF471at 471.948 kb on - strand, within GFF471at 471.961 kb on + strand, within GFF471at 471.969 kb on - strand, within GFF471at 471.969 kb on - strand, within GFF471at 471.973 kb on - strand, within GFF471at 472.020 kb on + strand, within GFF471at 472.028 kb on - strand, within GFF471at 472.065 kb on - strand, within GFF471at 472.068 kb on + strand, within GFF471at 472.115 kb on + strand, within GFF471at 472.115 kb on + strand, within GFF471at 472.115 kb on + strand, within GFF471at 472.115 kb on + strand, within GFF471at 472.122 kb on + strand, within GFF471at 472.124 kb on - strand, within GFF471at 472.127 kb on + strand, within GFF471at 472.162 kb on - strand, within GFF471at 472.162 kb on - strand, within GFF471at 472.166 kb on + strand, within GFF471at 472.177 kb on + strand, within GFF471at 472.185 kb on - strand, within GFF471at 472.187 kb on - strand, within GFF471at 472.203 kb on - strand, within GFF471at 472.203 kb on - strand, within GFF471at 472.206 kb on + strand, within GFF471at 472.207 kb on + strand, within GFF471at 472.207 kb on + strand, within GFF471at 472.207 kb on + strand, within GFF471at 472.207 kb on + strand, within GFF471at 472.207 kb on + strand, within GFF471at 472.207 kb on + strand, within GFF471at 472.207 kb on + strand, within GFF471at 472.207 kb on + strand, within GFF471at 472.207 kb on + strand, within GFF471at 472.207 kb on + strand, within GFF471at 472.214 kb on - strand, within GFF471at 472.215 kb on - strand, within GFF471at 472.215 kb on - strand, within GFF471at 472.215 kb on - strand, within GFF471at 472.215 kb on - strand, within GFF471at 472.215 kb on - strand, within GFF471at 472.215 kb on - strand, within GFF471at 472.215 kb on - strand, within GFF471at 472.215 kb on - strand, within GFF471at 472.215 kb on - strand, within GFF471at 472.215 kb on - strand, within GFF471at 472.215 kb on - strand, within GFF471at 472.215 kb on - strand, within GFF471at 472.217 kb on + strand, within GFF471at 472.247 kb on + strand, within GFF471at 472.258 kb on + strand, within GFF471at 472.293 kb on - strand, within GFF471at 472.311 kb on - strand, within GFF471at 472.338 kb on + strand, within GFF471at 472.338 kb on + strand, within GFF471at 472.340 kb on - strand, within GFF471at 472.349 kb on + strand, within GFF471at 472.349 kb on + strand, within GFF471at 472.355 kb on + strand, within GFF471at 472.355 kb on - strand, within GFF471at 472.355 kb on - strand, within GFF471at 472.400 kb on - strand, within GFF471at 472.416 kb on + strand, within GFF471at 472.419 kb on - strand, within GFF471at 472.426 kb on + strand, within GFF471at 472.441 kb on + strand, within GFF471at 472.441 kb on + strand, within GFF471at 472.459 kb on - strand, within GFF471at 472.459 kb on - strand, within GFF471at 472.489 kb on + strand, within GFF471at 472.496 kb on - strand, within GFF471at 472.496 kb on - strand, within GFF471at 472.506 kb on + strand, within GFF471at 472.514 kb on - strand, within GFF471at 472.519 kb on + strand, within GFF471at 472.519 kb on - strand, within GFF471at 472.527 kb on - strand, within GFF471at 472.529 kb on + strand, within GFF471at 472.537 kb on - strand, within GFF471at 472.556 kb on - strand, within GFF471at 472.564 kb on + strand, within GFF471at 472.564 kb on + strand, within GFF471at 472.572 kb on - strand, within GFF471at 472.617 kb on + strandat 472.617 kb on + strandat 472.617 kb on + strandat 472.622 kb on + strandat 472.622 kb on + strandat 472.631 kb on - strandat 472.631 kb on - strandat 472.631 kb on - strandat 472.646 kb on - strandat 472.669 kb on + strandat 472.695 kb on + strandat 472.711 kb on - strandat 472.736 kb on + strandat 472.736 kb on + strandat 472.736 kb on + strandat 472.736 kb on + strandat 472.736 kb on + strandat 472.736 kb on + strandat 472.736 kb on + strandat 472.736 kb on + strandat 472.736 kb on + strandat 472.741 kb on + strandat 472.741 kb on + strandat 472.741 kb on + strandat 472.744 kb on - strandat 472.744 kb on - strandat 472.744 kb on - strandat 472.744 kb on - strandat 472.744 kb on - strandat 472.746 kb on + strandat 472.746 kb on + strandat 472.748 kb on + strandat 472.749 kb on - strandat 472.749 kb on - strandat 472.749 kb on - strandat 472.756 kb on - strandat 472.756 kb on - strandat 472.759 kb on - strandat 472.766 kb on - strandat 472.767 kb on - strandat 472.767 kb on - strandat 472.767 kb on - strandat 472.767 kb on - strandat 472.835 kb on + strandat 472.851 kb on - strandat 472.851 kb on - strandat 472.853 kb on - strandat 472.862 kb on + strandat 472.862 kb on + strandat 472.919 kb on + strand, within GFF472at 472.927 kb on - strand, within GFF472at 472.937 kb on - strand, within GFF472at 472.942 kb on - strand, within GFF472at 472.942 kb on - strand, within GFF472at 473.001 kb on - strand, within GFF472at 473.077 kb on + strand, within GFF472at 473.085 kb on - strand, within GFF472at 473.085 kb on - strand, within GFF472at 473.085 kb on - strand, within GFF472at 473.092 kb on + strand, within GFF472at 473.092 kb on + strand, within GFF472at 473.092 kb on + strand, within GFF472at 473.100 kb on - strand, within GFF472at 473.100 kb on - strand, within GFF472at 473.100 kb on - strand, within GFF472at 473.100 kb on - strand, within GFF472at 473.913 kb on - strandat 473.928 kb on - strandat 473.928 kb on - strandat 473.928 kb on - strandat 473.930 kb on - strandat 473.932 kb on + strandat 473.948 kb on - strandat 473.948 kb on - strandat 473.988 kb on - strandat 474.003 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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471,783 + GFF471 0.26 +0.1
471,793 + GFF471 0.27 -0.7
471,793 + GFF471 0.27 -1.8
471,793 + GFF471 0.27 +0.7
471,793 + GFF471 0.27 -1.2
471,801 - GFF471 0.27 -1.4
471,801 - GFF471 0.27 +0.6
471,801 - GFF471 0.27 -1.0
471,801 - GFF471 0.27 -0.8
471,801 - GFF471 0.27 -0.2
471,803 + GFF471 0.28 -1.2
471,811 - GFF471 0.28 +1.0
471,819 + GFF471 0.29 -0.7
471,819 + GFF471 0.29 -1.8
471,833 + GFF471 0.30 -0.0
471,833 + GFF471 0.30 -1.1
471,834 + GFF471 0.30 +0.7
471,848 + GFF471 0.31 -1.2
471,866 - GFF471 0.32 -0.7
471,888 - GFF471 0.34 -1.5
471,920 + GFF471 0.37 -0.6
471,935 + GFF471 0.38 +0.3
471,940 + GFF471 0.38 -0.0
471,943 - GFF471 0.38 +0.8
471,943 - GFF471 0.38 +0.3
471,948 - GFF471 0.39 -0.4
471,961 + GFF471 0.40 -1.2
471,969 - GFF471 0.40 -0.6
471,969 - GFF471 0.40 -1.2
471,973 - GFF471 0.41 +0.4
472,020 + GFF471 0.44 -0.7
472,028 - GFF471 0.45 -0.5
472,065 - GFF471 0.48 -0.1
472,068 + GFF471 0.48 -0.5
472,115 + GFF471 0.52 +0.2
472,115 + GFF471 0.52 -1.2
472,115 + GFF471 0.52 -1.5
472,115 + GFF471 0.52 -0.1
472,122 + GFF471 0.52 -1.2
472,124 - GFF471 0.52 -1.6
472,127 + GFF471 0.53 +0.7
472,162 - GFF471 0.55 -0.8
472,162 - GFF471 0.55 -1.7
472,166 + GFF471 0.56 -0.2
472,177 + GFF471 0.56 -0.3
472,185 - GFF471 0.57 -0.7
472,187 - GFF471 0.57 +1.4
472,203 - GFF471 0.58 +1.0
472,203 - GFF471 0.58 -0.2
472,206 + GFF471 0.59 +0.2
472,207 + GFF471 0.59 +1.0
472,207 + GFF471 0.59 -1.0
472,207 + GFF471 0.59 -0.1
472,207 + GFF471 0.59 -0.7
472,207 + GFF471 0.59 +0.2
472,207 + GFF471 0.59 +0.8
472,207 + GFF471 0.59 -0.4
472,207 + GFF471 0.59 -0.2
472,207 + GFF471 0.59 -0.3
472,207 + GFF471 0.59 +1.4
472,214 - GFF471 0.59 -2.2
472,215 - GFF471 0.59 -0.1
472,215 - GFF471 0.59 -2.7
472,215 - GFF471 0.59 -0.5
472,215 - GFF471 0.59 -0.2
472,215 - GFF471 0.59 -1.8
472,215 - GFF471 0.59 -0.2
472,215 - GFF471 0.59 -2.1
472,215 - GFF471 0.59 -1.6
472,215 - GFF471 0.59 -0.2
472,215 - GFF471 0.59 -1.1
472,215 - GFF471 0.59 +0.9
472,215 - GFF471 0.59 +0.4
472,217 + GFF471 0.60 -0.5
472,247 + GFF471 0.62 -0.1
472,258 + GFF471 0.63 -1.6
472,293 - GFF471 0.65 -1.5
472,311 - GFF471 0.67 -2.4
472,338 + GFF471 0.69 -0.2
472,338 + GFF471 0.69 -1.9
472,340 - GFF471 0.69 -0.5
472,349 + GFF471 0.70 +1.0
472,349 + GFF471 0.70 -0.2
472,355 + GFF471 0.70 +0.1
472,355 - GFF471 0.70 -1.0
472,355 - GFF471 0.70 -2.2
472,400 - GFF471 0.74 +0.4
472,416 + GFF471 0.75 +0.1
472,419 - GFF471 0.75 -2.6
472,426 + GFF471 0.76 +0.1
472,441 + GFF471 0.77 -0.0
472,441 + GFF471 0.77 -0.4
472,459 - GFF471 0.78 -1.4
472,459 - GFF471 0.78 -0.2
472,489 + GFF471 0.80 -0.3
472,496 - GFF471 0.81 -2.0
472,496 - GFF471 0.81 +0.2
472,506 + GFF471 0.82 -0.4
472,514 - GFF471 0.82 -1.6
472,519 + GFF471 0.83 -0.8
472,519 - GFF471 0.83 +0.0
472,527 - GFF471 0.83 -0.0
472,529 + GFF471 0.84 +1.1
472,537 - GFF471 0.84 -1.1
472,556 - GFF471 0.86 -2.2
472,564 + GFF471 0.86 +0.4
472,564 + GFF471 0.86 -0.5
472,572 - GFF471 0.87 +0.4
472,617 + +0.5
472,617 + +0.9
472,617 + -0.0
472,622 + +0.2
472,622 + +1.4
472,631 - +1.0
472,631 - -1.6
472,631 - -1.4
472,646 - +0.3
472,669 + -1.3
472,695 + -0.7
472,711 - +0.2
472,736 + -1.8
472,736 + +0.2
472,736 + -1.0
472,736 + -0.0
472,736 + +0.8
472,736 + +0.3
472,736 + -0.2
472,736 + -0.5
472,736 + -2.3
472,741 + -0.2
472,741 + -1.6
472,741 + +0.4
472,744 - -0.2
472,744 - -0.8
472,744 - +0.6
472,744 - -0.8
472,744 - +1.0
472,746 + -0.1
472,746 + +0.2
472,748 + -1.2
472,749 - +1.2
472,749 - -0.8
472,749 - -0.1
472,756 - +0.1
472,756 - -0.8
472,759 - -1.0
472,766 - +1.1
472,767 - +0.1
472,767 - +1.0
472,767 - -0.2
472,767 - -0.0
472,835 + +0.3
472,851 - -1.3
472,851 - +0.1
472,853 - -0.0
472,862 + +1.3
472,862 + -0.2
472,919 + GFF472 0.14 -0.3
472,927 - GFF472 0.14 +0.7
472,937 - GFF472 0.15 +0.0
472,942 - GFF472 0.16 -0.2
472,942 - GFF472 0.16 +1.2
473,001 - GFF472 0.21 -1.6
473,077 + GFF472 0.27 +0.3
473,085 - GFF472 0.28 +0.2
473,085 - GFF472 0.28 -0.1
473,085 - GFF472 0.28 +0.8
473,092 + GFF472 0.29 +0.5
473,092 + GFF472 0.29 +0.8
473,092 + GFF472 0.29 +1.3
473,100 - GFF472 0.29 -0.6
473,100 - GFF472 0.29 -0.1
473,100 - GFF472 0.29 +0.4
473,100 - GFF472 0.29 +0.9
473,913 - +0.4
473,928 - +0.7
473,928 - -1.0
473,928 - +0.6
473,930 - -1.2
473,932 + -1.2
473,948 - +0.4
473,948 - -0.7
473,988 - +0.4
474,003 - +0.8

Or see this region's nucleotide sequence