Strain Fitness in Sphingobium sp. HT1-2 around GFF4708

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,708,971	-		GFF4707	0.10	+1.1
4,708,971	-		GFF4707	0.10	+0.2
4,708,976	-		GFF4707	0.11	+0.3
4,708,976	-		GFF4707	0.11	-0.7
4,708,976	-		GFF4707	0.11	-0.8
4,708,976	-		GFF4707	0.11	-0.8
4,709,001	-		GFF4707	0.13	-1.0
4,709,001	-		GFF4707	0.13	-1.5
4,709,001	-		GFF4707	0.13	+1.3
4,709,001	-		GFF4707	0.13	+0.3
4,709,006	+		GFF4707	0.14	+0.5
4,709,016	+		GFF4707	0.14	+0.9
4,709,083	+		GFF4707	0.21	+0.6
4,709,083	+		GFF4707	0.21	-2.5
4,709,083	+		GFF4707	0.21	+0.4
4,709,083	+		GFF4707	0.21	+0.8
4,709,088	+		GFF4707	0.22	+0.4
4,709,091	-		GFF4707	0.22	-0.4
4,709,091	-		GFF4707	0.22	+0.4
4,709,096	-		GFF4707	0.22	+0.9
4,709,101	-		GFF4707	0.23	-0.5
4,709,129	-		GFF4707	0.26	-0.2
4,709,131	+		GFF4707	0.26	-0.8
4,709,151	+		GFF4707	0.28	-1.5
4,709,151	+		GFF4707	0.28	-0.1
4,709,158	-		GFF4707	0.29	+1.4
4,709,158	-		GFF4707	0.29	-0.8
4,709,159	-		GFF4707	0.29	-0.5
4,709,198	+		GFF4707	0.32	-2.0
4,709,198	+		GFF4707	0.32	-0.4
4,709,199	+		GFF4707	0.33	+0.0
4,709,203	+		GFF4707	0.33	+1.9
4,709,206	-		GFF4707	0.33	+1.6
4,709,280	-		GFF4707	0.41	+0.4
4,709,291	+		GFF4707	0.42	+1.1
4,709,299	-		GFF4707	0.42	-0.3
4,709,306	-		GFF4707	0.43	-1.4
4,709,325	-		GFF4707	0.45	+0.7
4,709,333	+		GFF4707	0.46	+0.3
4,709,350	+		GFF4707	0.47	+0.5
4,709,350	+		GFF4707	0.47	+0.8
4,709,358	-		GFF4707	0.48	-0.2
4,709,358	-		GFF4707	0.48	+0.6
4,709,364	-		GFF4707	0.49	-0.7
4,709,396	-		GFF4707	0.52	+0.2
4,709,415	+		GFF4707	0.54	-1.7
4,709,420	+		GFF4707	0.54	+0.7
4,709,423	-		GFF4707	0.55	-0.3
4,709,436	-		GFF4707	0.56	-0.8
4,709,442	+		GFF4707	0.57	+0.0
4,709,444	+		GFF4707	0.57	+0.3
4,709,444	+		GFF4707	0.57	-1.8
4,709,444	+		GFF4707	0.57	+0.1
4,709,444	+		GFF4707	0.57	+0.7
4,709,444	+		GFF4707	0.57	+0.1
4,709,452	-		GFF4707	0.57	-0.2
4,709,452	-		GFF4707	0.57	+0.7
4,709,452	-		GFF4707	0.57	+0.0
4,709,452	-		GFF4707	0.57	+1.0
4,709,452	-		GFF4707	0.57	+1.4
4,709,452	-		GFF4707	0.57	+0.3
4,709,477	+		GFF4707	0.60	-0.7
4,709,498	-		GFF4707	0.62	+0.3
4,709,509	+		GFF4707	0.63	-0.4
4,709,509	+		GFF4707	0.63	+0.1
4,709,517	-		GFF4707	0.64	+0.7
4,709,539	-		GFF4707	0.66	+0.5
4,709,584	-		GFF4707	0.71	+0.9
4,709,610	-		GFF4707	0.73	+0.7
4,709,628	-		GFF4707	0.75	+1.9
4,709,628	-		GFF4707	0.75	+0.4
4,709,637	+		GFF4707	0.76	+0.1
4,709,638	-		GFF4707	0.76	-0.9
4,709,646	-		GFF4707	0.77	+0.1
4,709,663	-		GFF4707	0.78	-0.7
4,709,665	+		GFF4707	0.79	-0.0
4,709,670	+		GFF4707	0.79	-0.2
4,709,690	-		GFF4707	0.81	-1.5
4,709,701	-		GFF4707	0.82	-1.2
4,709,701	-		GFF4707	0.82	-0.2
4,709,703	-		GFF4707	0.82	+0.3
4,709,703	-		GFF4707	0.82	-0.5
4,709,712	+		GFF4707	0.83	+1.0
4,709,712	+		GFF4707	0.83	-0.1
4,709,712	+		GFF4707	0.83	-1.8
4,709,720	-		GFF4707	0.84	-2.4
4,709,720	-		GFF4707	0.84	+0.0
4,709,720	-		GFF4707	0.84	-1.8
4,709,720	-		GFF4707	0.84	+0.4
4,709,736	+		GFF4707	0.86	+0.0
4,709,739	-		GFF4707	0.86	+1.6
4,709,739	-		GFF4707	0.86	+0.6
4,709,741	+		GFF4707	0.86	+1.2
4,709,749	-		GFF4707	0.87	-1.8
4,709,784	+				+1.3
4,709,795	+				-1.9
4,709,807	+				-2.0
4,709,823	+				+0.2
4,709,845	+				+0.1
4,709,850	+				+0.6
4,709,853	-				+1.0
4,709,855	+				+0.2
4,709,858	-				+0.8
4,709,881	+				+0.1
4,709,897	+				-1.0
4,709,897	+				+0.1
4,709,897	+				-0.8
4,709,902	+				+0.3
4,709,905	-				+0.2
4,709,905	-				-0.2
4,709,905	-				-0.8
4,709,930	+				+1.1
4,709,938	-				-0.3
4,709,938	-				-0.4
4,709,938	-				-0.4
4,709,939	-				+0.4
4,709,960	-				-1.4
4,709,978	+				-1.9
4,709,994	+				-0.6
4,709,994	+				-0.1
4,710,002	-				+0.5
4,710,028	-				+0.8
4,710,037	+				+0.2
4,710,041	-				-0.5
4,710,041	-				+1.2
4,710,045	-				-0.5
4,710,045	-				+1.2
4,710,045	-				+0.7
4,710,141	+		GFF4708	0.18	+1.0
4,710,148	+		GFF4708	0.18	+0.6
4,710,148	+		GFF4708	0.18	+0.4
4,710,148	+		GFF4708	0.18	-0.3
4,710,148	+		GFF4708	0.18	+0.4
4,710,156	-		GFF4708	0.19	+0.4
4,710,156	-		GFF4708	0.19	+1.4
4,710,156	-		GFF4708	0.19	-0.1
4,710,156	-		GFF4708	0.19	-0.7
4,710,156	-		GFF4708	0.19	-1.7
4,710,165	-		GFF4708	0.20	-1.4
4,710,167	-		GFF4708	0.20	-1.9
4,710,231	+		GFF4708	0.27	+0.2
4,710,257	-		GFF4708	0.29	-1.5
4,710,258	-		GFF4708	0.30	-0.0
4,710,263	-		GFF4708	0.30	-1.4
4,710,263	-		GFF4708	0.30	-1.2
4,710,277	+		GFF4708	0.31	+0.6
4,710,277	+		GFF4708	0.31	+1.2
4,710,282	+		GFF4708	0.32	-0.7
4,710,282	+		GFF4708	0.32	-0.5
4,710,282	+		GFF4708	0.32	-2.1
4,710,282	+		GFF4708	0.32	-0.8
4,710,285	-		GFF4708	0.32	+0.7
4,710,290	-		GFF4708	0.33	-2.0
4,710,333	-		GFF4708	0.37	-0.7
4,710,355	-		GFF4708	0.39	-0.1
4,710,363	+		GFF4708	0.40	-0.1
4,710,371	-		GFF4708	0.41	+0.8
4,710,375	+		GFF4708	0.42	+0.1
4,710,395	+		GFF4708	0.44	+0.2
4,710,403	-		GFF4708	0.44	-0.1
4,710,439	-		GFF4708	0.48	-0.0
4,710,448	+		GFF4708	0.49	-0.7
4,710,454	-		GFF4708	0.50	-0.4
4,710,509	+		GFF4708	0.55	-0.9
4,710,509	+		GFF4708	0.55	-0.3
4,710,509	+		GFF4708	0.55	-0.4
4,710,509	+		GFF4708	0.55	-0.8
4,710,509	+		GFF4708	0.55	+0.9
4,710,509	+		GFF4708	0.55	-0.6
4,710,517	-		GFF4708	0.56	-1.9
4,710,517	-		GFF4708	0.56	+0.4
4,710,517	-		GFF4708	0.56	-0.2
4,710,517	-		GFF4708	0.56	-0.3
4,710,517	-		GFF4708	0.56	-1.3
4,710,517	-		GFF4708	0.56	+0.8
4,710,522	-		GFF4708	0.57	-0.2
4,710,522	-		GFF4708	0.57	+0.3
4,710,548	+		GFF4708	0.59	-0.1
4,710,548	+		GFF4708	0.59	+0.9
4,710,548	+		GFF4708	0.59	-0.4
4,710,548	+		GFF4708	0.59	+0.2
4,710,556	-		GFF4708	0.60	-0.4
4,710,556	-		GFF4708	0.60	-0.3
4,710,556	-		GFF4708	0.60	-0.1
4,710,556	-		GFF4708	0.60	-0.2
4,710,558	-		GFF4708	0.60	-1.0
4,710,569	+		GFF4708	0.61	-0.1
4,710,572	-		GFF4708	0.62	+0.3
4,710,575	-		GFF4708	0.62	-0.4
4,710,577	-		GFF4708	0.62	-0.4
4,710,579	+		GFF4708	0.62	-0.0
4,710,579	+		GFF4708	0.62	-0.2
4,710,579	+		GFF4708	0.62	-0.7
4,710,579	+		GFF4708	0.62	+0.3
4,710,579	+		GFF4708	0.62	+0.4
4,710,587	-		GFF4708	0.63	+0.2
4,710,587	-		GFF4708	0.63	-0.4
4,710,587	-		GFF4708	0.63	+0.5
4,710,587	-		GFF4708	0.63	+0.5
4,710,587	-		GFF4708	0.63	+0.1
4,710,587	-		GFF4708	0.63	-0.8
4,710,614	+		GFF4708	0.66	-0.1
4,710,632	-		GFF4708	0.68	+1.0
4,710,668	+		GFF4708	0.71	-0.5
4,710,668	+		GFF4708	0.71	-1.4
4,710,668	-		GFF4708	0.71	-2.2
4,710,676	-		GFF4708	0.72	-1.5
4,710,676	-		GFF4708	0.72	+0.8
4,710,697	+		GFF4708	0.74	+0.5
4,710,718	+		GFF4708	0.77	-0.7
4,710,718	+		GFF4708	0.77	-0.3
4,710,718	+		GFF4708	0.77	-0.1
4,710,721	-		GFF4708	0.77	+0.0
4,710,721	-		GFF4708	0.77	-0.3
4,710,726	-		GFF4708	0.77	-0.4
4,710,726	-		GFF4708	0.77	-0.1
4,710,726	-		GFF4708	0.77	-1.5
4,710,726	-		GFF4708	0.77	-0.4
4,710,726	-		GFF4708	0.77	-0.3
4,710,728	-		GFF4708	0.78	+0.2
4,710,739	-		GFF4708	0.79	+0.3
4,710,775	+		GFF4708	0.82	-1.7
4,710,775	+		GFF4708	0.82	+0.7
4,710,775	+		GFF4708	0.82	-0.6
4,710,775	+		GFF4708	0.82	+0.6
4,710,775	+		GFF4708	0.82	+0.7
4,710,775	+		GFF4708	0.82	+0.0
4,710,775	+		GFF4708	0.82	+0.7
4,710,775	+		GFF4708	0.82	+0.5
4,710,780	+		GFF4708	0.83	-1.0
4,710,783	-		GFF4708	0.83	+0.1
4,710,783	-		GFF4708	0.83	+1.6
4,710,783	-		GFF4708	0.83	-1.1
4,710,783	-		GFF4708	0.83	-1.9
4,710,783	-		GFF4708	0.83	+0.5
4,710,783	-		GFF4708	0.83	+0.6
4,710,797	+		GFF4708	0.85	-0.6
4,710,805	-		GFF4708	0.85	-0.5
4,710,831	+		GFF4708	0.88	-1.1
4,710,843	+		GFF4708	0.89	+0.3
4,710,843	+		GFF4708	0.89	+0.1
4,710,843	+		GFF4708	0.89	-0.0
4,710,851	-				-1.0
4,710,851	-				-0.1
4,710,851	-				-0.9
4,710,857	-				-1.3
4,710,926	+				-0.1
4,710,934	-				+0.0
4,710,936	+				+2.0
4,710,944	+				-0.1
4,710,944	-				-0.4
4,710,949	-				-1.4
4,710,951	-				-0.6
4,710,952	-				-0.9
4,710,952	-				-0.6
4,710,953	+				-0.3
4,710,953	+				-0.7
4,710,953	+				+1.6
4,710,953	+				+0.5
4,710,953	+				+1.8
4,710,953	+				+0.2
4,710,961	-				+0.4
4,710,961	-				+0.6
4,710,962	-				-0.5
4,710,962	-				+1.0
4,710,979	-				+0.4
4,710,982	+				-0.9
4,710,984	-				-0.6
4,711,009	+		GFF4709	0.13	+0.8
4,711,019	+		GFF4709	0.15	-1.3
4,711,019	+		GFF4709	0.15	+0.3
4,711,022	-		GFF4709	0.16	-0.2
4,711,027	-		GFF4709	0.17	+0.9
4,711,027	-		GFF4709	0.17	-0.8
4,711,027	-		GFF4709	0.17	-0.0
4,711,032	+		GFF4709	0.18	+0.1
4,711,032	+		GFF4709	0.18	-0.6
4,711,032	+		GFF4709	0.18	-1.5
4,711,040	-		GFF4709	0.20	-0.9
4,711,056	+		GFF4709	0.24	-0.5
4,711,099	+		GFF4709	0.35	+1.7
4,711,099	+		GFF4709	0.35	+0.6
4,711,107	-		GFF4709	0.37	-2.3
4,711,107	-		GFF4709	0.37	-0.2
4,711,109	+		GFF4709	0.37	-1.6
4,711,117	-		GFF4709	0.39	+0.5
4,711,118	-		GFF4709	0.39	-1.7
4,711,119	-		GFF4709	0.40	-0.8
4,711,128	+		GFF4709	0.42	+1.0
4,711,128	+		GFF4709	0.42	+0.9
4,711,185	+		GFF4709	0.56	+0.1
4,711,188	-		GFF4709	0.56	-0.0
4,711,198	-		GFF4709	0.59	+0.4
4,711,198	-		GFF4709	0.59	-0.5
4,711,210	-		GFF4709	0.62	-1.1
4,711,215	+		GFF4709	0.63	-0.7
4,711,215	+		GFF4709	0.63	-0.2
4,711,223	-		GFF4709	0.65	+0.3
4,711,223	-		GFF4709	0.65	+2.2
4,711,235	-		GFF4709	0.68	+0.4
4,711,237	+		GFF4709	0.68	-0.0
4,711,263	+		GFF4709	0.75	+0.9
4,711,279	+		GFF4709	0.79	+0.0
4,711,287	-		GFF4709	0.81	+0.7
4,711,287	-		GFF4709	0.81	+0.3
4,711,299	-		GFF4709	0.83	-0.6
4,711,301	+		GFF4709	0.84	-0.2
4,711,315	+		GFF4709	0.87	-1.6
4,711,410	-				-0.5
4,711,421	-				-0.1
4,711,451	+		GFF4710	0.11	+0.3
4,711,459	+		GFF4710	0.12	-0.1
4,711,478	+		GFF4710	0.15	-0.3
4,711,478	+		GFF4710	0.15	+0.0
4,711,478	+		GFF4710	0.15	-0.1
4,711,481	-		GFF4710	0.16	+0.6
4,711,486	-		GFF4710	0.17	-2.1
4,711,486	-		GFF4710	0.17	+2.1
4,711,501	-		GFF4710	0.19	-1.4
4,711,526	+		GFF4710	0.23	+0.3
4,711,526	+		GFF4710	0.23	+0.1
4,711,526	+		GFF4710	0.23	-1.2
4,711,526	+		GFF4710	0.23	-2.3
4,711,546	+		GFF4710	0.26	+0.6
4,711,562	+		GFF4710	0.28	-0.3
4,711,562	+		GFF4710	0.28	-1.0
4,711,619	-		GFF4710	0.37	+0.1
4,711,630	+		GFF4710	0.39	+0.3
4,711,630	+		GFF4710	0.39	+0.6
4,711,638	-		GFF4710	0.40	+0.7
4,711,659	+		GFF4710	0.44	+1.0
4,711,680	-		GFF4710	0.47	+1.2
4,711,697	-		GFF4710	0.50	-0.0
4,711,697	-		GFF4710	0.50	-1.7
4,711,729	-		GFF4710	0.55	-0.8
4,711,735	+		GFF4710	0.56	+0.1
4,711,743	-		GFF4710	0.57	-0.0
4,711,746	+		GFF4710	0.57	+1.0
4,711,754	+		GFF4710	0.59	-1.6
4,711,771	-		GFF4710	0.61	-0.2
4,711,840	-		GFF4710	0.72	-2.5
4,711,847	-		GFF4710	0.73	+0.2
4,711,886	-		GFF4710	0.79	+1.0
4,711,889	-		GFF4710	0.80	+0.1
4,711,899	-		GFF4710	0.81	+0.3
4,711,927	+		GFF4710	0.86	+0.1
4,711,938	+		GFF4710	0.87	+1.6
4,711,943	+		GFF4710	0.88	+0.4
4,711,943	+		GFF4710	0.88	+0.1
4,711,943	+		GFF4710	0.88	-1.3