Strain Fitness in Sphingobium sp. HT1-2 around GFF4693

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,693,784	+		GFF4692	0.27	-0.1
4,693,796	+		GFF4692	0.28	-0.2
4,693,804	-		GFF4692	0.28	-0.1
4,693,806	+		GFF4692	0.28	+1.2
4,693,806	+		GFF4692	0.28	+1.1
4,693,814	-		GFF4692	0.29	-2.1
4,693,814	-		GFF4692	0.29	-1.2
4,693,825	-		GFF4692	0.30	+0.4
4,693,864	+		GFF4692	0.33	+0.6
4,693,864	+		GFF4692	0.33	+0.1
4,693,872	-		GFF4692	0.33	-0.4
4,693,872	-		GFF4692	0.33	-0.2
4,693,872	-		GFF4692	0.33	-0.4
4,693,872	-		GFF4692	0.33	-0.1
4,693,908	+		GFF4692	0.36	+1.8
4,694,034	+		GFF4692	0.45	-0.9
4,694,035	+		GFF4692	0.45	-0.1
4,694,043	-		GFF4692	0.46	+0.0
4,694,065	+		GFF4692	0.47	-0.6
4,694,065	+		GFF4692	0.47	+0.6
4,694,073	-		GFF4692	0.48	-0.1
4,694,073	-		GFF4692	0.48	-0.6
4,694,088	-		GFF4692	0.49	+0.2
4,694,128	+		GFF4692	0.52	-0.1
4,694,136	-		GFF4692	0.53	-1.6
4,694,157	+		GFF4692	0.54	-0.6
4,694,157	+		GFF4692	0.54	+0.4
4,694,157	+		GFF4692	0.54	+0.0
4,694,162	+		GFF4692	0.55	-1.6
4,694,162	+		GFF4692	0.55	-0.6
4,694,165	-		GFF4692	0.55	-1.4
4,694,165	-		GFF4692	0.55	+0.4
4,694,165	-		GFF4692	0.55	+0.6
4,694,165	-		GFF4692	0.55	-0.8
4,694,170	-		GFF4692	0.55	+1.8
4,694,170	-		GFF4692	0.55	+1.3
4,694,176	-		GFF4692	0.56	+0.4
4,694,181	+		GFF4692	0.56	+0.1
4,694,186	+		GFF4692	0.56	+0.7
4,694,186	+		GFF4692	0.56	+0.4
4,694,186	+		GFF4692	0.56	+0.0
4,694,186	+		GFF4692	0.56	-0.2
4,694,186	+		GFF4692	0.56	+0.3
4,694,186	+		GFF4692	0.56	-0.4
4,694,189	-		GFF4692	0.57	-0.1
4,694,194	-		GFF4692	0.57	+0.4
4,694,194	-		GFF4692	0.57	+0.2
4,694,194	-		GFF4692	0.57	+0.4
4,694,194	-		GFF4692	0.57	-0.7
4,694,194	-		GFF4692	0.57	+0.6
4,694,229	-		GFF4692	0.59	+0.1
4,694,234	-		GFF4692	0.60	-0.2
4,694,234	-		GFF4692	0.60	-1.0
4,694,245	-		GFF4692	0.61	+0.6
4,694,260	+		GFF4692	0.62	-0.5
4,694,260	+		GFF4692	0.62	-0.0
4,694,260	+		GFF4692	0.62	-0.1
4,694,260	+		GFF4692	0.62	+0.1
4,694,266	+		GFF4692	0.62	+1.0
4,694,266	+		GFF4692	0.62	+0.7
4,694,266	+		GFF4692	0.62	+0.2
4,694,268	-		GFF4692	0.62	+0.7
4,694,268	-		GFF4692	0.62	-0.1
4,694,268	-		GFF4692	0.62	+0.0
4,694,268	-		GFF4692	0.62	-2.1
4,694,268	-		GFF4692	0.62	+1.1
4,694,268	-		GFF4692	0.62	-0.1
4,694,268	-		GFF4692	0.62	+0.8
4,694,268	-		GFF4692	0.62	+0.4
4,694,274	-		GFF4692	0.63	-2.0
4,694,274	-		GFF4692	0.63	+0.3
4,694,274	-		GFF4692	0.63	-0.2
4,694,274	-		GFF4692	0.63	-0.7
4,694,275	-		GFF4692	0.63	-1.4
4,694,284	-		GFF4692	0.64	-1.1
4,694,295	+		GFF4692	0.64	+0.2
4,694,336	+		GFF4692	0.67	-0.3
4,694,336	+		GFF4692	0.67	+0.4
4,694,348	+		GFF4692	0.68	-0.4
4,694,348	+		GFF4692	0.68	-1.7
4,694,360	-		GFF4692	0.69	+0.4
4,694,378	+		GFF4692	0.70	-1.6
4,694,381	-		GFF4692	0.71	-0.7
4,694,381	-		GFF4692	0.71	+1.2
4,694,403	-		GFF4692	0.72	-1.4
4,694,406	+		GFF4692	0.72	+1.1
4,694,406	+		GFF4692	0.72	+0.4
4,694,406	+		GFF4692	0.72	+1.0
4,694,406	+		GFF4692	0.72	+0.9
4,694,406	+		GFF4692	0.72	+0.8
4,694,414	-		GFF4692	0.73	+0.1
4,694,414	-		GFF4692	0.73	-1.7
4,694,414	-		GFF4692	0.73	+0.3
4,694,414	-		GFF4692	0.73	+1.5
4,694,414	-		GFF4692	0.73	-0.1
4,694,416	+		GFF4692	0.73	-0.9
4,694,416	+		GFF4692	0.73	-1.6
4,694,416	+		GFF4692	0.73	-0.4
4,694,424	-		GFF4692	0.74	+0.4
4,694,426	+		GFF4692	0.74	+0.6
4,694,428	+		GFF4692	0.74	-0.8
4,694,428	+		GFF4692	0.74	+0.3
4,694,428	+		GFF4692	0.74	-0.9
4,694,428	+		GFF4692	0.74	-2.5
4,694,431	-		GFF4692	0.74	-0.2
4,694,431	-		GFF4692	0.74	-1.1
4,694,433	+		GFF4692	0.74	+0.7
4,694,433	+		GFF4692	0.74	+0.2
4,694,433	+		GFF4692	0.74	-0.6
4,694,433	+		GFF4692	0.74	+0.9
4,694,433	+		GFF4692	0.74	+1.3
4,694,433	+		GFF4692	0.74	+0.5
4,694,433	+		GFF4692	0.74	-0.1
4,694,433	+		GFF4692	0.74	+1.1
4,694,433	+		GFF4692	0.74	-0.0
4,694,434	-		GFF4692	0.75	+1.8
4,694,436	-		GFF4692	0.75	+0.4
4,694,436	-		GFF4692	0.75	+1.9
4,694,436	-		GFF4692	0.75	+0.4
4,694,436	-		GFF4692	0.75	-0.6
4,694,436	-		GFF4692	0.75	+0.0
4,694,436	-		GFF4692	0.75	-0.7
4,694,436	-		GFF4692	0.75	-0.4
4,694,436	-		GFF4692	0.75	+0.2
4,694,440	+		GFF4692	0.75	+1.3
4,694,440	+		GFF4692	0.75	+0.3
4,694,440	+		GFF4692	0.75	+0.0
4,694,441	-		GFF4692	0.75	-0.6
4,694,441	-		GFF4692	0.75	+0.0
4,694,441	-		GFF4692	0.75	-0.3
4,694,441	-		GFF4692	0.75	+0.7
4,694,441	-		GFF4692	0.75	+0.1
4,694,441	-		GFF4692	0.75	-0.8
4,694,441	-		GFF4692	0.75	+0.0
4,694,441	-		GFF4692	0.75	+0.8
4,694,441	-		GFF4692	0.75	+0.6
4,694,441	-		GFF4692	0.75	+1.0
4,694,445	+		GFF4692	0.75	-0.9
4,694,445	+		GFF4692	0.75	-0.4
4,694,446	-		GFF4692	0.75	+1.1
4,694,448	-		GFF4692	0.76	+0.1
4,694,453	-		GFF4692	0.76	+0.2
4,694,453	-		GFF4692	0.76	-1.1
4,694,453	-		GFF4692	0.76	-0.7
4,694,464	-		GFF4692	0.77	-0.5
4,694,474	+		GFF4692	0.77	+0.4
4,694,482	-		GFF4692	0.78	-0.1
4,694,482	-		GFF4692	0.78	-1.6
4,694,499	+		GFF4692	0.79	+0.3
4,694,499	+		GFF4692	0.79	+0.3
4,694,499	+		GFF4692	0.79	-0.7
4,694,505	-		GFF4692	0.80	+0.0
4,694,507	-		GFF4692	0.80	+1.4
4,694,557	-		GFF4692	0.84	-1.0
4,694,568	+		GFF4692	0.84	+0.0
4,694,568	+		GFF4692	0.84	+0.8
4,694,576	+		GFF4692	0.85	+0.9
4,694,576	-		GFF4692	0.85	-0.4
4,694,649	+				+0.0
4,694,650	-				+0.8
4,694,656	+				-0.2
4,694,658	-				-0.3
4,694,659	-				-0.8
4,694,692	-				-1.6
4,694,697	+				+0.3
4,694,697	+				+0.1
4,694,697	-				+0.7
4,694,739	+				+1.8
4,694,747	-				+0.9
4,694,747	-				-0.1
4,694,777	+				+1.0
4,694,777	+				-1.2
4,694,778	+				-1.7
4,694,778	+				+0.9
4,694,785	-				-0.4
4,694,785	-				+0.1
4,694,786	-				+0.8
4,694,786	-				+0.1
4,694,786	-				+0.7
4,694,786	-				-0.9
4,694,786	-				+1.9
4,694,796	-				-0.3
4,694,821	+		GFF4693	0.14	-0.8
4,694,821	+		GFF4693	0.14	-0.9
4,694,821	+		GFF4693	0.14	+0.1
4,694,829	-		GFF4693	0.17	-0.9
4,694,829	-		GFF4693	0.17	-0.1
4,694,829	-		GFF4693	0.17	-0.1
4,694,829	-		GFF4693	0.17	+0.4
4,694,829	-		GFF4693	0.17	+0.3
4,694,831	+		GFF4693	0.18	+0.1
4,694,831	+		GFF4693	0.18	+0.4
4,694,831	+		GFF4693	0.18	+1.2
4,694,831	+		GFF4693	0.18	-0.7
4,694,831	+		GFF4693	0.18	-0.3
4,694,831	+		GFF4693	0.18	-0.3
4,694,831	+		GFF4693	0.18	-0.1
4,694,838	+		GFF4693	0.21	+0.3
4,694,839	-		GFF4693	0.21	+0.8
4,694,839	-		GFF4693	0.21	-1.7
4,694,839	-		GFF4693	0.21	-0.5
4,694,839	-		GFF4693	0.21	-1.2
4,694,839	-		GFF4693	0.21	+0.6
4,694,839	-		GFF4693	0.21	+0.9
4,694,839	-		GFF4693	0.21	-0.4
4,694,839	-		GFF4693	0.21	-1.1
4,694,839	-		GFF4693	0.21	+0.0
4,694,839	-		GFF4693	0.21	+0.4
4,694,846	-		GFF4693	0.24	+0.7
4,694,846	-		GFF4693	0.24	-0.3
4,694,846	-		GFF4693	0.24	+0.2
4,694,846	-		GFF4693	0.24	+1.1
4,694,846	-		GFF4693	0.24	-0.6
4,694,849	+		GFF4693	0.25	+0.0
4,694,857	-		GFF4693	0.28	-0.6
4,694,867	+		GFF4693	0.31	+1.0
4,694,867	+		GFF4693	0.31	+0.0
4,694,867	+		GFF4693	0.31	+0.4
4,694,884	+		GFF4693	0.37	-0.6
4,694,889	+		GFF4693	0.39	-0.2
4,694,891	-		GFF4693	0.40	+0.4
4,694,892	-		GFF4693	0.40	-2.2
4,694,892	-		GFF4693	0.40	+0.2
4,694,910	+		GFF4693	0.47	+0.6
4,694,913	-		GFF4693	0.48	-1.7
4,694,915	+		GFF4693	0.49	+0.1
4,694,915	+		GFF4693	0.49	+0.0
4,694,918	-		GFF4693	0.50	-0.4
4,694,932	+		GFF4693	0.55	-1.0
4,694,932	+		GFF4693	0.55	+0.3
4,694,932	+		GFF4693	0.55	-0.4
4,694,932	+		GFF4693	0.55	-2.2
4,694,932	+		GFF4693	0.55	+0.0
4,694,932	+		GFF4693	0.55	-0.0
4,694,932	+		GFF4693	0.55	+0.3
4,694,932	+		GFF4693	0.55	+1.5
4,694,932	+		GFF4693	0.55	+1.2
4,694,934	+		GFF4693	0.55	+0.7
4,694,935	-		GFF4693	0.56	+1.0
4,694,935	-		GFF4693	0.56	+0.5
4,694,937	+		GFF4693	0.57	-0.5
4,694,937	+		GFF4693	0.57	+1.3
4,694,940	-		GFF4693	0.58	-0.7
4,694,940	-		GFF4693	0.58	-1.4
4,694,940	-		GFF4693	0.58	+0.6
4,694,940	-		GFF4693	0.58	-1.4
4,694,940	-		GFF4693	0.58	+0.1
4,694,940	-		GFF4693	0.58	+0.8
4,694,940	-		GFF4693	0.58	+0.3
4,694,941	-		GFF4693	0.58	+0.3
4,694,961	-		GFF4693	0.65	+0.7
4,694,983	+		GFF4693	0.73	+0.7
4,694,983	+		GFF4693	0.73	+0.1
4,694,983	+		GFF4693	0.73	-0.5
4,694,983	+		GFF4693	0.73	-1.0
4,694,986	-		GFF4693	0.74	+0.6
4,694,991	-		GFF4693	0.76	+1.3
4,695,009	+		GFF4693	0.83	+1.0
4,695,080	+				+1.8
4,695,080	+				-1.4
4,695,098	+				+0.3
4,695,098	+				+1.4
4,695,106	-				-0.2
4,695,111	+				+0.3
4,695,140	-				+0.3
4,695,187	+				-1.6
4,695,187	+				-0.2
4,695,195	+				+0.5
4,695,195	-				-1.3
4,695,208	-				+1.4
4,695,214	-				-0.2
4,695,216	+				+0.4
4,695,242	-				-1.0
4,695,263	+				+0.5
4,695,263	+				-1.2
4,695,263	+				+1.9
4,695,268	+				+1.0
4,695,271	-				+0.3
4,695,276	-				-0.6
4,695,294	+				-0.5
4,695,328	+				+0.6
4,695,341	+				-0.7
4,695,344	-				+1.6
4,695,344	-				-1.1
4,695,344	-				+0.1
4,695,344	-				+0.7
4,695,369	+				+0.5
4,695,369	+				+1.1
4,695,379	+				+0.3
4,695,379	+				+1.4
4,695,399	+				-1.0
4,695,404	+				+0.5
4,695,407	-				+0.8
4,695,407	-				-0.2
4,695,407	-				+0.1
4,695,407	-				-0.6
4,695,407	-				+0.4
4,695,410	+				+0.9
4,695,410	+				+0.6
4,695,410	+				+1.3
4,695,415	+				+0.8
4,695,415	+				-1.2
4,695,415	+				+0.2
4,695,415	+				+1.1
4,695,418	-				+0.6
4,695,418	-				+0.6
4,695,418	-				-0.1
4,695,418	-				+1.9
4,695,418	-				-0.4
4,695,418	-				+0.4
4,695,418	-				+0.9
4,695,420	+				-0.4
4,695,443	+				+0.6
4,695,449	-				-0.9
4,695,464	+				+0.9
4,695,464	+				-0.3
4,695,464	+				-0.3
4,695,464	+				-0.1
4,695,464	+				-0.1
4,695,472	-				+1.6
4,695,472	-				-0.1
4,695,472	-				+0.2
4,695,472	-				+0.7
4,695,477	+				+0.4
4,695,493	-				-1.1
4,695,503	-				+0.4
4,695,503	-				+1.3
4,695,526	-				-0.7
4,695,526	-				-0.1
4,695,537	+		GFF4694	0.11	-0.2
4,695,538	+		GFF4694	0.11	+1.0
4,695,542	+		GFF4694	0.12	+0.4
4,695,558	+		GFF4694	0.14	+1.0
4,695,558	+		GFF4694	0.14	+1.4
4,695,561	-		GFF4694	0.14	+1.0
4,695,561	-		GFF4694	0.14	+0.1
4,695,561	-		GFF4694	0.14	-0.1
4,695,566	-		GFF4694	0.15	+0.5
4,695,586	+		GFF4694	0.18	+1.1
4,695,586	-		GFF4694	0.18	+1.1
4,695,594	-		GFF4694	0.20	+0.6
4,695,594	-		GFF4694	0.20	+0.7
4,695,607	+		GFF4694	0.22	+1.2
4,695,610	-		GFF4694	0.22	+0.7
4,695,616	+		GFF4694	0.23	+0.1
4,695,624	-		GFF4694	0.24	+0.8
4,695,653	-		GFF4694	0.29	+0.5
4,695,660	-		GFF4694	0.30	-0.2
4,695,669	+		GFF4694	0.31	+0.4
4,695,672	+		GFF4694	0.31	+1.4
4,695,678	-		GFF4694	0.32	+0.1
4,695,688	-		GFF4694	0.34	+0.4
4,695,734	+		GFF4694	0.41	-2.4
4,695,740	-		GFF4694	0.42	+0.6
4,695,746	-		GFF4694	0.43	+1.0
4,695,764	+		GFF4694	0.46	+1.1
4,695,778	-		GFF4694	0.48	+0.6
4,695,793	+		GFF4694	0.50	-0.5
4,695,822	-		GFF4694	0.55	-0.3
4,695,824	+		GFF4694	0.55	-0.2
4,695,826	+		GFF4694	0.55	-0.9
4,695,850	+		GFF4694	0.59	+2.1
4,695,858	-		GFF4694	0.60	+0.8
4,695,864	+		GFF4694	0.61	-0.9
4,695,872	-		GFF4694	0.62	+0.6
4,695,872	-		GFF4694	0.62	+0.6
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