Strain Fitness in Sphingobium sp. HT1-2 around GFF4679

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,675,183	-		GFF4678	0.35	+1.3
4,675,190	+		GFF4678	0.36	-0.3
4,675,198	-		GFF4678	0.36	-0.1
4,675,209	+		GFF4678	0.37	+1.2
4,675,209	+		GFF4678	0.37	+0.9
4,675,216	-		GFF4678	0.37	-0.6
4,675,217	-		GFF4678	0.37	+0.3
4,675,217	-		GFF4678	0.37	+1.4
4,675,217	-		GFF4678	0.37	-1.5
4,675,220	+		GFF4678	0.38	+0.6
4,675,222	-		GFF4678	0.38	+0.0
4,675,223	-		GFF4678	0.38	+1.2
4,675,297	-		GFF4678	0.43	+1.5
4,675,314	+		GFF4678	0.44	-1.3
4,675,314	+		GFF4678	0.44	+0.4
4,675,319	+		GFF4678	0.44	+0.3
4,675,322	-		GFF4678	0.45	-0.1
4,675,322	-		GFF4678	0.45	+0.2
4,675,322	-		GFF4678	0.45	+1.1
4,675,369	+		GFF4678	0.48	+0.2
4,675,379	+		GFF4678	0.48	+0.3
4,675,384	+		GFF4678	0.49	-0.5
4,675,387	+		GFF4678	0.49	+1.1
4,675,387	-		GFF4678	0.49	-0.4
4,675,388	+		GFF4678	0.49	+0.2
4,675,389	+		GFF4678	0.49	+1.1
4,675,389	+		GFF4678	0.49	+0.4
4,675,389	+		GFF4678	0.49	+1.1
4,675,389	+		GFF4678	0.49	-1.1
4,675,389	+		GFF4678	0.49	+0.4
4,675,389	+		GFF4678	0.49	+1.1
4,675,389	+		GFF4678	0.49	+0.6
4,675,389	+		GFF4678	0.49	+0.2
4,675,389	+		GFF4678	0.49	+0.2
4,675,389	+		GFF4678	0.49	-0.1
4,675,389	+		GFF4678	0.49	-2.2
4,675,389	+		GFF4678	0.49	+0.6
4,675,389	+		GFF4678	0.49	+0.9
4,675,389	+		GFF4678	0.49	-0.3
4,675,389	+		GFF4678	0.49	+0.4
4,675,389	+		GFF4678	0.49	-0.3
4,675,389	+		GFF4678	0.49	-1.6
4,675,389	+		GFF4678	0.49	-0.1
4,675,389	+		GFF4678	0.49	+0.8
4,675,392	-		GFF4678	0.49	-0.8
4,675,394	+		GFF4678	0.49	+0.7
4,675,394	+		GFF4678	0.49	+0.9
4,675,394	+		GFF4678	0.49	-0.1
4,675,394	+		GFF4678	0.49	-0.9
4,675,394	+		GFF4678	0.49	-2.4
4,675,395	-		GFF4678	0.49	+0.2
4,675,395	-		GFF4678	0.49	+1.3
4,675,395	-		GFF4678	0.49	-0.1
4,675,395	-		GFF4678	0.49	+0.2
4,675,397	-		GFF4678	0.50	+0.1
4,675,397	-		GFF4678	0.50	+0.6
4,675,397	-		GFF4678	0.50	+0.1
4,675,397	-		GFF4678	0.50	+1.4
4,675,397	-		GFF4678	0.50	+0.6
4,675,397	-		GFF4678	0.50	+1.2
4,675,397	-		GFF4678	0.50	-0.1
4,675,397	-		GFF4678	0.50	-1.4
4,675,397	-		GFF4678	0.50	+0.6
4,675,397	-		GFF4678	0.50	+1.2
4,675,397	-		GFF4678	0.50	+0.7
4,675,397	-		GFF4678	0.50	+0.6
4,675,397	-		GFF4678	0.50	-0.0
4,675,397	-		GFF4678	0.50	+0.3
4,675,399	+		GFF4678	0.50	+0.9
4,675,401	+		GFF4678	0.50	+0.2
4,675,401	+		GFF4678	0.50	+0.0
4,675,402	-		GFF4678	0.50	-0.3
4,675,402	-		GFF4678	0.50	+0.1
4,675,402	-		GFF4678	0.50	-0.0
4,675,402	-		GFF4678	0.50	+0.6
4,675,402	-		GFF4678	0.50	+0.1
4,675,402	-		GFF4678	0.50	-0.6
4,675,402	-		GFF4678	0.50	+0.7
4,675,407	-		GFF4678	0.50	+0.1
4,675,407	-		GFF4678	0.50	+0.9
4,675,407	-		GFF4678	0.50	-1.6
4,675,409	-		GFF4678	0.50	-0.3
4,675,409	-		GFF4678	0.50	+0.5
4,675,420	+		GFF4678	0.51	+0.1
4,675,428	-		GFF4678	0.52	+0.9
4,675,433	-		GFF4678	0.52	-1.0
4,675,438	-		GFF4678	0.52	-0.9
4,675,438	-		GFF4678	0.52	-0.4
4,675,443	-		GFF4678	0.53	-0.0
4,675,443	-		GFF4678	0.53	+1.0
4,675,464	+		GFF4678	0.54	-1.2
4,675,464	+		GFF4678	0.54	+0.1
4,675,464	+		GFF4678	0.54	+1.9
4,675,464	+		GFF4678	0.54	-2.1
4,675,466	-		GFF4678	0.54	-0.4
4,675,472	-		GFF4678	0.55	+0.2
4,675,472	-		GFF4678	0.55	-0.4
4,675,477	-		GFF4678	0.55	-1.2
4,675,527	-		GFF4678	0.58	-1.8
4,675,560	-		GFF4678	0.60	-0.4
4,675,598	-		GFF4678	0.63	-0.6
4,675,599	+		GFF4678	0.63	+0.2
4,675,599	+		GFF4678	0.63	-0.7
4,675,599	+		GFF4678	0.63	-2.5
4,675,599	+		GFF4678	0.63	-0.4
4,675,599	+		GFF4678	0.63	+0.3
4,675,607	-		GFF4678	0.64	+0.8
4,675,607	-		GFF4678	0.64	+0.6
4,675,607	-		GFF4678	0.64	-0.6
4,675,622	-		GFF4678	0.65	+0.1
4,675,625	+		GFF4678	0.65	+0.4
4,675,642	+		GFF4678	0.66	-0.6
4,675,642	+		GFF4678	0.66	-0.9
4,675,642	+		GFF4678	0.66	-0.8
4,675,642	+		GFF4678	0.66	+0.2
4,675,642	+		GFF4678	0.66	-0.1
4,675,650	-		GFF4678	0.66	+0.9
4,675,650	-		GFF4678	0.66	-0.2
4,675,652	+		GFF4678	0.67	-0.9
4,675,660	-		GFF4678	0.67	+1.6
4,675,664	+		GFF4678	0.67	-1.7
4,675,672	-		GFF4678	0.68	+0.4
4,675,676	+		GFF4678	0.68	-0.7
4,675,684	+		GFF4678	0.69	-1.5
4,675,684	+		GFF4678	0.69	-1.5
4,675,684	+		GFF4678	0.69	+0.6
4,675,684	+		GFF4678	0.69	+0.5
4,675,684	+		GFF4678	0.69	+1.5
4,675,689	+		GFF4678	0.69	-0.4
4,675,692	+		GFF4678	0.69	+0.6
4,675,692	-		GFF4678	0.69	-0.7
4,675,692	-		GFF4678	0.69	-2.3
4,675,692	-		GFF4678	0.69	-0.8
4,675,692	-		GFF4678	0.69	+0.1
4,675,692	-		GFF4678	0.69	+0.3
4,675,692	-		GFF4678	0.69	+0.1
4,675,702	-		GFF4678	0.70	+0.6
4,675,702	-		GFF4678	0.70	+0.1
4,675,719	+		GFF4678	0.71	-1.5
4,675,719	+		GFF4678	0.71	-0.4
4,675,724	+		GFF4678	0.71	-2.3
4,675,724	+		GFF4678	0.71	-0.4
4,675,727	-		GFF4678	0.72	-0.0
4,675,727	-		GFF4678	0.72	-0.6
4,675,727	-		GFF4678	0.72	-0.9
4,675,727	-		GFF4678	0.72	-1.6
4,675,727	-		GFF4678	0.72	-1.1
4,675,732	-		GFF4678	0.72	+1.0
4,675,732	-		GFF4678	0.72	-1.4
4,675,732	-		GFF4678	0.72	-0.7
4,675,732	-		GFF4678	0.72	+1.0
4,675,741	+		GFF4678	0.73	+0.4
4,675,746	+		GFF4678	0.73	+0.9
4,675,746	+		GFF4678	0.73	-0.9
4,675,746	+		GFF4678	0.73	+0.4
4,675,749	-		GFF4678	0.73	-0.4
4,675,749	-		GFF4678	0.73	+0.3
4,675,775	+		GFF4678	0.75	+0.0
4,675,841	+		GFF4678	0.79	-0.1
4,675,846	+		GFF4678	0.80	-2.1
4,675,848	-		GFF4678	0.80	+1.5
4,675,851	+		GFF4678	0.80	+1.1
4,675,857	-		GFF4678	0.80	+0.9
4,675,864	+		GFF4678	0.81	+0.6
4,675,872	-		GFF4678	0.81	+0.2
4,675,874	+		GFF4678	0.81	-0.0
4,675,887	+		GFF4678	0.82	-0.9
4,675,896	-		GFF4678	0.83	-0.1
4,675,896	-		GFF4678	0.83	+0.8
4,675,896	-		GFF4678	0.83	+0.1
4,675,897	+		GFF4678	0.83	-0.0
4,675,908	+		GFF4678	0.84	+0.0
4,675,908	+		GFF4678	0.84	-0.4
4,675,934	+		GFF4678	0.85	-0.7
4,675,944	+		GFF4678	0.86	+0.1
4,675,947	-		GFF4678	0.86	+0.0
4,675,952	-		GFF4678	0.87	-0.6
4,675,952	-		GFF4678	0.87	+0.1
4,675,954	+		GFF4678	0.87	-0.5
4,675,982	-		GFF4678	0.89	-1.8
4,675,992	+		GFF4678	0.89	-0.4
4,676,012	-				-0.7
4,676,048	-				+0.6
4,676,068	+				-0.3
4,676,098	-				-1.2
4,676,135	+				+0.7
4,676,135	+				+0.8
4,676,135	+				-0.9
4,676,138	-				-1.6
4,676,143	-				+1.5
4,676,143	-				+0.5
4,676,143	-				+0.5
4,676,143	-				-0.3
4,676,145	+				-2.9
4,676,198	+				+1.3
4,676,229	+				-1.5
4,676,234	+				+0.9
4,676,237	-				+0.9
4,676,243	-				+0.4
4,676,268	+		GFF4679	0.11	+0.6
4,676,273	-		GFF4679	0.11	-0.3
4,676,278	+		GFF4679	0.12	+1.0
4,676,293	+		GFF4679	0.13	-2.4
4,676,294	+		GFF4679	0.13	+1.7
4,676,312	+		GFF4679	0.15	+0.4
4,676,312	+		GFF4679	0.15	-0.0
4,676,312	+		GFF4679	0.15	-1.3
4,676,312	+		GFF4679	0.15	+1.0
4,676,312	+		GFF4679	0.15	+1.0
4,676,320	-		GFF4679	0.16	-0.2
4,676,320	-		GFF4679	0.16	-0.8
4,676,320	-		GFF4679	0.16	-1.1
4,676,320	-		GFF4679	0.16	+0.1
4,676,320	-		GFF4679	0.16	+1.0
4,676,326	+		GFF4679	0.16	+0.5
4,676,326	+		GFF4679	0.16	+1.2
4,676,326	+		GFF4679	0.16	+0.6
4,676,331	+		GFF4679	0.17	-0.5
4,676,331	+		GFF4679	0.17	-0.6
4,676,331	+		GFF4679	0.17	+2.0
4,676,369	+		GFF4679	0.21	+0.8
4,676,388	+		GFF4679	0.23	+0.3
4,676,393	+		GFF4679	0.23	+0.8
4,676,393	+		GFF4679	0.23	+0.6
4,676,401	-		GFF4679	0.24	-1.6
4,676,420	+		GFF4679	0.26	-1.6
4,676,428	-		GFF4679	0.26	-1.7
4,676,428	-		GFF4679	0.26	-1.4
4,676,428	-		GFF4679	0.26	+0.2
4,676,436	+		GFF4679	0.27	+1.8
4,676,436	+		GFF4679	0.27	-0.1
4,676,444	-		GFF4679	0.28	+1.0
4,676,444	-		GFF4679	0.28	-0.0
4,676,451	+		GFF4679	0.29	-0.8
4,676,454	-		GFF4679	0.29	+0.5
4,676,466	+		GFF4679	0.30	+1.0
4,676,469	-		GFF4679	0.30	+0.8
4,676,507	-		GFF4679	0.34	-1.5
4,676,514	+		GFF4679	0.35	+1.3
4,676,515	-		GFF4679	0.35	+1.1
4,676,517	-		GFF4679	0.35	+0.3
4,676,521	+		GFF4679	0.36	+0.8
4,676,534	-		GFF4679	0.37	-0.4
4,676,536	+		GFF4679	0.37	+0.6
4,676,536	+		GFF4679	0.37	-0.5
4,676,536	+		GFF4679	0.37	+1.0
4,676,536	+		GFF4679	0.37	+0.4
4,676,536	+		GFF4679	0.37	+0.6
4,676,536	+		GFF4679	0.37	-1.7
4,676,536	+		GFF4679	0.37	+0.5
4,676,544	+		GFF4679	0.38	+1.3
4,676,544	+		GFF4679	0.38	-0.3
4,676,544	-		GFF4679	0.38	-0.4
4,676,544	-		GFF4679	0.38	+0.9
4,676,544	-		GFF4679	0.38	-1.3
4,676,545	-		GFF4679	0.38	+0.6
4,676,574	+		GFF4679	0.41	+1.6
4,676,585	-		GFF4679	0.42	-0.4
4,676,592	+		GFF4679	0.43	+1.5
4,676,607	+		GFF4679	0.44	+1.4
4,676,612	+		GFF4679	0.45	+1.3
4,676,650	+		GFF4679	0.48	+0.6
4,676,657	+		GFF4679	0.49	-1.8
4,676,659	+		GFF4679	0.49	+1.4
4,676,667	-		GFF4679	0.50	+0.4
4,676,667	-		GFF4679	0.50	+0.8
4,676,679	+		GFF4679	0.51	-1.3
4,676,679	+		GFF4679	0.51	-0.1
4,676,694	+		GFF4679	0.53	-1.8
4,676,699	+		GFF4679	0.53	+1.1
4,676,699	+		GFF4679	0.53	-0.5
4,676,702	-		GFF4679	0.53	+0.9
4,676,702	-		GFF4679	0.53	-0.5
4,676,702	-		GFF4679	0.53	-0.2
4,676,704	+		GFF4679	0.54	+0.9
4,676,704	+		GFF4679	0.54	-2.7
4,676,704	+		GFF4679	0.54	+1.0
4,676,704	+		GFF4679	0.54	+0.1
4,676,704	+		GFF4679	0.54	-0.1
4,676,704	+		GFF4679	0.54	-0.3
4,676,707	-		GFF4679	0.54	+0.4
4,676,707	-		GFF4679	0.54	+0.5
4,676,712	-		GFF4679	0.54	+1.5
4,676,712	-		GFF4679	0.54	-0.5
4,676,712	-		GFF4679	0.54	-0.6
4,676,712	-		GFF4679	0.54	+0.1
4,676,743	+		GFF4679	0.57	+1.3
4,676,806	+		GFF4679	0.64	+1.0
4,676,814	+		GFF4679	0.64	-1.6
4,676,831	-		GFF4679	0.66	-0.9
4,676,833	+		GFF4679	0.66	+0.6
4,676,833	+		GFF4679	0.66	+0.8
4,676,833	+		GFF4679	0.66	-0.3
4,676,833	+		GFF4679	0.66	+0.4
4,676,841	-		GFF4679	0.67	+1.4
4,676,841	-		GFF4679	0.67	+0.4
4,676,842	+		GFF4679	0.67	+0.5
4,676,852	+		GFF4679	0.68	-2.1
4,676,852	+		GFF4679	0.68	+0.1
4,676,860	-		GFF4679	0.69	-1.2
4,676,860	-		GFF4679	0.69	-0.2
4,676,860	-		GFF4679	0.69	+1.0
4,676,860	-		GFF4679	0.69	+0.1
4,676,860	-		GFF4679	0.69	-1.1
4,676,860	-		GFF4679	0.69	-1.8
4,676,860	-		GFF4679	0.69	+0.1
4,676,860	-		GFF4679	0.69	-0.1
4,676,860	-		GFF4679	0.69	+0.1
4,676,881	-		GFF4679	0.71	-1.6
4,676,888	+		GFF4679	0.72	+0.1
4,676,888	+		GFF4679	0.72	-2.0
4,676,888	+		GFF4679	0.72	-0.6
4,676,888	+		GFF4679	0.72	-0.2
4,676,888	+		GFF4679	0.72	-0.2
4,676,896	-		GFF4679	0.72	-0.8
4,676,896	-		GFF4679	0.72	-1.9
4,676,896	-		GFF4679	0.72	+0.9
4,676,896	-		GFF4679	0.72	+1.0
4,676,896	-		GFF4679	0.72	-0.4
4,676,896	-		GFF4679	0.72	-0.4
4,676,896	-		GFF4679	0.72	+0.7
4,676,896	-		GFF4679	0.72	+1.0
4,676,896	-		GFF4679	0.72	+1.1
4,676,896	-		GFF4679	0.72	-1.5
4,676,906	-		GFF4679	0.73	+0.5
4,676,906	-		GFF4679	0.73	+0.1
4,676,909	+		GFF4679	0.74	+0.2
4,676,909	+		GFF4679	0.74	-0.0
4,676,909	+		GFF4679	0.74	+0.9
4,676,909	+		GFF4679	0.74	-1.0
4,676,914	+		GFF4679	0.74	+0.2
4,676,914	+		GFF4679	0.74	+1.1
4,676,914	+		GFF4679	0.74	-0.6
4,676,914	+		GFF4679	0.74	+1.5
4,676,914	+		GFF4679	0.74	+0.8
4,676,914	+		GFF4679	0.74	-2.0
4,676,914	+		GFF4679	0.74	-0.6
4,676,914	+		GFF4679	0.74	+0.3
4,676,914	+		GFF4679	0.74	-0.0
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4,677,117	+				+1.1
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