Strain Fitness in Sphingobium sp. HT1-2 around GFF4678

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,673,661	+		GFF4676	0.71	+0.6
4,673,662	+		GFF4676	0.71	-0.3
4,673,666	+		GFF4676	0.72	+0.1
4,673,666	+		GFF4676	0.72	+0.8
4,673,669	-		GFF4676	0.72	+0.5
4,673,687	-		GFF4676	0.74	+1.4
4,673,727	-		GFF4676	0.78	+1.0
4,673,756	+		GFF4676	0.82	-0.5
4,673,759	-		GFF4676	0.82	+0.6
4,673,762	+		GFF4676	0.82	+1.5
4,673,793	+		GFF4676	0.86	-0.9
4,673,793	+		GFF4676	0.86	+1.0
4,673,793	+		GFF4676	0.86	+1.1
4,673,793	+		GFF4676	0.86	+0.1
4,673,793	+		GFF4676	0.86	-0.6
4,673,793	-		GFF4676	0.86	-1.0
4,673,796	-		GFF4676	0.86	+0.1
4,673,801	-		GFF4676	0.87	+0.8
4,673,801	-		GFF4676	0.87	+1.4
4,673,801	-		GFF4676	0.87	+0.9
4,673,816	+		GFF4676	0.88	+1.6
4,673,816	+		GFF4676	0.88	+0.8
4,673,830	+				+0.2
4,673,830	+				+0.5
4,673,872	+				+0.3
4,673,886	+				+0.6
4,673,905	+				+1.3
4,673,908	+				+0.0
4,673,908	+				+0.4
4,673,908	+				+1.1
4,673,909	-				-0.7
4,673,916	-				-1.8
4,673,916	-				-0.1
4,673,916	-				+0.6
4,673,916	-				+1.3
4,673,918	-				-0.0
4,673,948	+				+0.5
4,673,952	+				+0.4
4,673,964	+				+0.5
4,673,971	+				-0.1
4,673,972	-				+0.5
4,674,011	-		GFF4677	0.12	+0.1
4,674,016	+		GFF4677	0.12	+0.7
4,674,016	+		GFF4677	0.12	+0.9
4,674,017	+		GFF4677	0.13	-0.4
4,674,029	-		GFF4677	0.14	-0.7
4,674,031	+		GFF4677	0.14	-0.4
4,674,034	-		GFF4677	0.15	-0.1
4,674,039	-		GFF4677	0.16	+0.9
4,674,102	+		GFF4677	0.24	-0.9
4,674,128	-		GFF4677	0.28	-0.6
4,674,181	+		GFF4677	0.35	+1.4
4,674,181	+		GFF4677	0.35	+0.9
4,674,181	+		GFF4677	0.35	-1.8
4,674,181	+		GFF4677	0.35	-0.8
4,674,189	-		GFF4677	0.36	+1.6
4,674,189	-		GFF4677	0.36	-1.5
4,674,189	-		GFF4677	0.36	-0.4
4,674,189	-		GFF4677	0.36	-0.0
4,674,189	-		GFF4677	0.36	-0.9
4,674,189	-		GFF4677	0.36	+1.0
4,674,189	-		GFF4677	0.36	+1.5
4,674,189	-		GFF4677	0.36	-2.0
4,674,189	-		GFF4677	0.36	+0.4
4,674,191	+		GFF4677	0.36	-1.6
4,674,213	-		GFF4677	0.39	+0.8
4,674,223	-		GFF4677	0.41	+0.6
4,674,229	+		GFF4677	0.42	+0.1
4,674,259	+		GFF4677	0.46	-0.9
4,674,259	+		GFF4677	0.46	+0.8
4,674,267	-		GFF4677	0.47	-1.4
4,674,305	-		GFF4677	0.52	-2.8
4,674,316	-		GFF4677	0.53	+1.3
4,674,321	+		GFF4677	0.54	-1.5
4,674,323	+		GFF4677	0.54	+0.9
4,674,394	+		GFF4677	0.64	+0.6
4,674,409	-		GFF4677	0.66	-0.4
4,674,461	+		GFF4677	0.73	+1.8
4,674,467	-		GFF4677	0.74	-2.5
4,674,467	-		GFF4677	0.74	-0.4
4,674,468	-		GFF4677	0.74	-0.5
4,674,476	+		GFF4677	0.75	-0.1
4,674,476	+		GFF4677	0.75	-0.6
4,674,500	+		GFF4677	0.79	-1.3
4,674,510	+		GFF4677	0.80	-0.2
4,674,510	+		GFF4677	0.80	-0.9
4,674,513	-		GFF4677	0.80	-0.7
4,674,515	+		GFF4677	0.81	+1.0
4,674,515	+		GFF4677	0.81	+0.2
4,674,515	+		GFF4677	0.81	+0.4
4,674,515	+		GFF4677	0.81	+1.1
4,674,515	+		GFF4677	0.81	-0.7
4,674,523	-		GFF4677	0.82	-0.6
4,674,523	-		GFF4677	0.82	+0.0
4,674,523	-		GFF4677	0.82	-1.4
4,674,525	+		GFF4677	0.82	-0.1
4,674,528	-		GFF4677	0.82	+0.3
4,674,530	+		GFF4677	0.83	-2.3
4,674,530	+		GFF4677	0.83	-0.1
4,674,530	+		GFF4677	0.83	-1.2
4,674,535	+		GFF4677	0.83	+0.2
4,674,538	-		GFF4677	0.84	-0.5
4,674,557	+		GFF4677	0.86	-0.5
4,674,601	-				-1.5
4,674,626	+				+0.5
4,674,626	-				+0.5
4,674,634	-				+0.9
4,674,634	-				-0.4
4,674,641	+				-2.4
4,674,673	+				-0.1
4,674,681	-				+0.6
4,674,692	+				-0.3
4,674,692	+				-1.0
4,674,692	+				-0.1
4,674,692	+				-0.6
4,674,700	-				+1.7
4,674,713	+				+0.4
4,674,721	+				+0.1
4,674,721	+				-0.4
4,674,721	-				-0.7
4,674,729	-				+0.4
4,674,729	-				-0.3
4,674,756	+				-1.6
4,674,764	-				-0.0
4,674,773	+				+2.4
4,674,773	+				-0.5
4,674,773	+				+1.4
4,674,781	-				-0.3
4,674,781	-				+1.2
4,674,786	-				+0.6
4,674,818	-		GFF4678	0.11	-1.0
4,674,818	-		GFF4678	0.11	+0.5
4,674,844	+		GFF4678	0.13	+0.6
4,674,862	-		GFF4678	0.14	-1.6
4,674,899	-		GFF4678	0.16	+0.3
4,674,903	+		GFF4678	0.16	+0.2
4,674,911	-		GFF4678	0.17	+0.2
4,674,911	-		GFF4678	0.17	-1.7
4,674,943	+		GFF4678	0.19	+0.1
4,674,943	+		GFF4678	0.19	+0.4
4,674,990	+		GFF4678	0.22	-0.2
4,674,998	-		GFF4678	0.23	-1.4
4,674,998	-		GFF4678	0.23	-0.4
4,674,998	-		GFF4678	0.23	-0.2
4,675,005	-		GFF4678	0.23	-0.2
4,675,033	+		GFF4678	0.25	+0.7
4,675,041	-		GFF4678	0.26	-0.6
4,675,071	-		GFF4678	0.28	+0.3
4,675,113	+		GFF4678	0.31	+0.3
4,675,135	+		GFF4678	0.32	+0.5
4,675,135	+		GFF4678	0.32	+1.4
4,675,135	+		GFF4678	0.32	+0.7
4,675,142	+		GFF4678	0.32	+0.5
4,675,142	+		GFF4678	0.32	-1.3
4,675,142	+		GFF4678	0.32	-0.3
4,675,143	-		GFF4678	0.33	-1.7
4,675,143	-		GFF4678	0.33	-0.4
4,675,150	-		GFF4678	0.33	-0.3
4,675,150	-		GFF4678	0.33	-0.1
4,675,150	-		GFF4678	0.33	-0.6
4,675,150	-		GFF4678	0.33	+0.2
4,675,183	-		GFF4678	0.35	+1.3
4,675,190	+		GFF4678	0.36	-0.3
4,675,198	-		GFF4678	0.36	-0.1
4,675,209	+		GFF4678	0.37	+1.2
4,675,209	+		GFF4678	0.37	+0.9
4,675,216	-		GFF4678	0.37	-0.6
4,675,217	-		GFF4678	0.37	+0.3
4,675,217	-		GFF4678	0.37	+1.4
4,675,217	-		GFF4678	0.37	-1.5
4,675,220	+		GFF4678	0.38	+0.6
4,675,222	-		GFF4678	0.38	+0.0
4,675,223	-		GFF4678	0.38	+1.2
4,675,297	-		GFF4678	0.43	+1.5
4,675,314	+		GFF4678	0.44	-1.3
4,675,314	+		GFF4678	0.44	+0.4
4,675,319	+		GFF4678	0.44	+0.3
4,675,322	-		GFF4678	0.45	-0.1
4,675,322	-		GFF4678	0.45	+0.2
4,675,322	-		GFF4678	0.45	+1.1
4,675,369	+		GFF4678	0.48	+0.2
4,675,379	+		GFF4678	0.48	+0.3
4,675,384	+		GFF4678	0.49	-0.5
4,675,387	+		GFF4678	0.49	+1.1
4,675,387	-		GFF4678	0.49	-0.4
4,675,388	+		GFF4678	0.49	+0.2
4,675,389	+		GFF4678	0.49	+1.1
4,675,389	+		GFF4678	0.49	+0.4
4,675,389	+		GFF4678	0.49	+1.1
4,675,389	+		GFF4678	0.49	-1.1
4,675,389	+		GFF4678	0.49	+0.4
4,675,389	+		GFF4678	0.49	+1.1
4,675,389	+		GFF4678	0.49	+0.6
4,675,389	+		GFF4678	0.49	+0.2
4,675,389	+		GFF4678	0.49	+0.2
4,675,389	+		GFF4678	0.49	-0.1
4,675,389	+		GFF4678	0.49	-2.2
4,675,389	+		GFF4678	0.49	+0.6
4,675,389	+		GFF4678	0.49	+0.9
4,675,389	+		GFF4678	0.49	-0.3
4,675,389	+		GFF4678	0.49	+0.4
4,675,389	+		GFF4678	0.49	-0.3
4,675,389	+		GFF4678	0.49	-1.6
4,675,389	+		GFF4678	0.49	-0.1
4,675,389	+		GFF4678	0.49	+0.8
4,675,392	-		GFF4678	0.49	-0.8
4,675,394	+		GFF4678	0.49	+0.7
4,675,394	+		GFF4678	0.49	+0.9
4,675,394	+		GFF4678	0.49	-0.1
4,675,394	+		GFF4678	0.49	-0.9
4,675,394	+		GFF4678	0.49	-2.4
4,675,395	-		GFF4678	0.49	+0.2
4,675,395	-		GFF4678	0.49	+1.3
4,675,395	-		GFF4678	0.49	-0.1
4,675,395	-		GFF4678	0.49	+0.2
4,675,397	-		GFF4678	0.50	+0.1
4,675,397	-		GFF4678	0.50	+0.6
4,675,397	-		GFF4678	0.50	+0.1
4,675,397	-		GFF4678	0.50	+1.4
4,675,397	-		GFF4678	0.50	+0.6
4,675,397	-		GFF4678	0.50	+1.2
4,675,397	-		GFF4678	0.50	-0.1
4,675,397	-		GFF4678	0.50	-1.4
4,675,397	-		GFF4678	0.50	+0.6
4,675,397	-		GFF4678	0.50	+1.2
4,675,397	-		GFF4678	0.50	+0.7
4,675,397	-		GFF4678	0.50	+0.6
4,675,397	-		GFF4678	0.50	-0.0
4,675,397	-		GFF4678	0.50	+0.3
4,675,399	+		GFF4678	0.50	+0.9
4,675,401	+		GFF4678	0.50	+0.2
4,675,401	+		GFF4678	0.50	+0.0
4,675,402	-		GFF4678	0.50	-0.3
4,675,402	-		GFF4678	0.50	+0.1
4,675,402	-		GFF4678	0.50	-0.0
4,675,402	-		GFF4678	0.50	+0.6
4,675,402	-		GFF4678	0.50	+0.1
4,675,402	-		GFF4678	0.50	-0.6
4,675,402	-		GFF4678	0.50	+0.7
4,675,407	-		GFF4678	0.50	+0.1
4,675,407	-		GFF4678	0.50	+0.9
4,675,407	-		GFF4678	0.50	-1.6
4,675,409	-		GFF4678	0.50	-0.3
4,675,409	-		GFF4678	0.50	+0.5
4,675,420	+		GFF4678	0.51	+0.1
4,675,428	-		GFF4678	0.52	+0.9
4,675,433	-		GFF4678	0.52	-1.0
4,675,438	-		GFF4678	0.52	-0.9
4,675,438	-		GFF4678	0.52	-0.4
4,675,443	-		GFF4678	0.53	-0.0
4,675,443	-		GFF4678	0.53	+1.0
4,675,464	+		GFF4678	0.54	-1.2
4,675,464	+		GFF4678	0.54	+0.1
4,675,464	+		GFF4678	0.54	+1.9
4,675,464	+		GFF4678	0.54	-2.1
4,675,466	-		GFF4678	0.54	-0.4
4,675,472	-		GFF4678	0.55	+0.2
4,675,472	-		GFF4678	0.55	-0.4
4,675,477	-		GFF4678	0.55	-1.2
4,675,527	-		GFF4678	0.58	-1.8
4,675,560	-		GFF4678	0.60	-0.4
4,675,598	-		GFF4678	0.63	-0.6
4,675,599	+		GFF4678	0.63	+0.2
4,675,599	+		GFF4678	0.63	-0.7
4,675,599	+		GFF4678	0.63	-2.5
4,675,599	+		GFF4678	0.63	-0.4
4,675,599	+		GFF4678	0.63	+0.3
4,675,607	-		GFF4678	0.64	+0.8
4,675,607	-		GFF4678	0.64	+0.6
4,675,607	-		GFF4678	0.64	-0.6
4,675,622	-		GFF4678	0.65	+0.1
4,675,625	+		GFF4678	0.65	+0.4
4,675,642	+		GFF4678	0.66	-0.6
4,675,642	+		GFF4678	0.66	-0.9
4,675,642	+		GFF4678	0.66	-0.8
4,675,642	+		GFF4678	0.66	+0.2
4,675,642	+		GFF4678	0.66	-0.1
4,675,650	-		GFF4678	0.66	+0.9
4,675,650	-		GFF4678	0.66	-0.2
4,675,652	+		GFF4678	0.67	-0.9
4,675,660	-		GFF4678	0.67	+1.6
4,675,664	+		GFF4678	0.67	-1.7
4,675,672	-		GFF4678	0.68	+0.4
4,675,676	+		GFF4678	0.68	-0.7
4,675,684	+		GFF4678	0.69	-1.5
4,675,684	+		GFF4678	0.69	-1.5
4,675,684	+		GFF4678	0.69	+0.6
4,675,684	+		GFF4678	0.69	+0.5
4,675,684	+		GFF4678	0.69	+1.5
4,675,689	+		GFF4678	0.69	-0.4
4,675,692	+		GFF4678	0.69	+0.6
4,675,692	-		GFF4678	0.69	-0.7
4,675,692	-		GFF4678	0.69	-2.3
4,675,692	-		GFF4678	0.69	-0.8
4,675,692	-		GFF4678	0.69	+0.1
4,675,692	-		GFF4678	0.69	+0.3
4,675,692	-		GFF4678	0.69	+0.1
4,675,702	-		GFF4678	0.70	+0.6
4,675,702	-		GFF4678	0.70	+0.1
4,675,719	+		GFF4678	0.71	-1.5
4,675,719	+		GFF4678	0.71	-0.4
4,675,724	+		GFF4678	0.71	-2.3
4,675,724	+		GFF4678	0.71	-0.4
4,675,727	-		GFF4678	0.72	-0.0
4,675,727	-		GFF4678	0.72	-0.6
4,675,727	-		GFF4678	0.72	-0.9
4,675,727	-		GFF4678	0.72	-1.6
4,675,727	-		GFF4678	0.72	-1.1
4,675,732	-		GFF4678	0.72	+1.0
4,675,732	-		GFF4678	0.72	-1.4
4,675,732	-		GFF4678	0.72	-0.7
4,675,732	-		GFF4678	0.72	+1.0
4,675,741	+		GFF4678	0.73	+0.4
4,675,746	+		GFF4678	0.73	+0.9
4,675,746	+		GFF4678	0.73	-0.9
4,675,746	+		GFF4678	0.73	+0.4
4,675,749	-		GFF4678	0.73	-0.4
4,675,749	-		GFF4678	0.73	+0.3
4,675,775	+		GFF4678	0.75	+0.0
4,675,841	+		GFF4678	0.79	-0.1
4,675,846	+		GFF4678	0.80	-2.1
4,675,848	-		GFF4678	0.80	+1.5
4,675,851	+		GFF4678	0.80	+1.1
4,675,857	-		GFF4678	0.80	+0.9
4,675,864	+		GFF4678	0.81	+0.6
4,675,872	-		GFF4678	0.81	+0.2
4,675,874	+		GFF4678	0.81	-0.0
4,675,887	+		GFF4678	0.82	-0.9
4,675,896	-		GFF4678	0.83	-0.1
4,675,896	-		GFF4678	0.83	+0.8
4,675,896	-		GFF4678	0.83	+0.1
4,675,897	+		GFF4678	0.83	-0.0
4,675,908	+		GFF4678	0.84	+0.0
4,675,908	+		GFF4678	0.84	-0.4
4,675,934	+		GFF4678	0.85	-0.7
4,675,944	+		GFF4678	0.86	+0.1
4,675,947	-		GFF4678	0.86	+0.0
4,675,952	-		GFF4678	0.87	-0.6
4,675,952	-		GFF4678	0.87	+0.1
4,675,954	+		GFF4678	0.87	-0.5
4,675,982	-		GFF4678	0.89	-1.8
4,675,992	+		GFF4678	0.89	-0.4
4,676,012	-				-0.7
4,676,048	-				+0.6
4,676,068	+				-0.3
4,676,098	-				-1.2
4,676,135	+				+0.7
4,676,135	+				+0.8
4,676,135	+				-0.9
4,676,138	-				-1.6
4,676,143	-				+1.5
4,676,143	-				+0.5
4,676,143	-				+0.5
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4,677,117	+				+1.1
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