Strain Fitness in Sphingobium sp. HT1-2 around GFF4676

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,672,065	-		GFF4675	0.25	-2.4
4,672,070	+		GFF4675	0.26	+0.8
4,672,078	-		GFF4675	0.27	+0.3
4,672,096	-		GFF4675	0.28	-0.9
4,672,115	-		GFF4675	0.30	+0.6
4,672,125	-		GFF4675	0.31	-0.4
4,672,125	-		GFF4675	0.31	+1.2
4,672,130	-		GFF4675	0.31	+1.6
4,672,133	-		GFF4675	0.32	+0.1
4,672,144	+		GFF4675	0.33	+0.3
4,672,163	+		GFF4675	0.35	+0.4
4,672,163	+		GFF4675	0.35	-0.7
4,672,182	-		GFF4675	0.36	+0.3
4,672,192	+		GFF4675	0.37	+0.3
4,672,192	+		GFF4675	0.37	-1.0
4,672,192	+		GFF4675	0.37	+0.7
4,672,192	+		GFF4675	0.37	+0.5
4,672,192	+		GFF4675	0.37	-1.5
4,672,192	+		GFF4675	0.37	+1.0
4,672,192	+		GFF4675	0.37	+1.2
4,672,193	+		GFF4675	0.37	-0.5
4,672,200	-		GFF4675	0.38	+1.8
4,672,200	-		GFF4675	0.38	+0.9
4,672,200	-		GFF4675	0.38	-0.0
4,672,206	-		GFF4675	0.39	+0.5
4,672,210	+		GFF4675	0.39	-0.3
4,672,231	-		GFF4675	0.41	+0.1
4,672,243	+		GFF4675	0.42	+1.0
4,672,243	+		GFF4675	0.42	+0.4
4,672,248	+		GFF4675	0.43	+0.7
4,672,249	-		GFF4675	0.43	+0.2
4,672,251	-		GFF4675	0.43	+1.5
4,672,251	-		GFF4675	0.43	+1.2
4,672,251	-		GFF4675	0.43	-0.0
4,672,256	-		GFF4675	0.43	-1.1
4,672,256	-		GFF4675	0.43	-1.7
4,672,271	-		GFF4675	0.45	-0.2
4,672,275	+		GFF4675	0.45	+1.0
4,672,277	+		GFF4675	0.45	+1.0
4,672,277	+		GFF4675	0.45	+1.3
4,672,277	+		GFF4675	0.45	+1.5
4,672,285	-		GFF4675	0.46	+0.6
4,672,317	+		GFF4675	0.49	-2.4
4,672,348	+		GFF4675	0.52	+0.5
4,672,352	-		GFF4675	0.52	+0.4
4,672,410	+		GFF4675	0.58	-0.4
4,672,410	+		GFF4675	0.58	+0.2
4,672,453	+		GFF4675	0.62	-0.1
4,672,481	-		GFF4675	0.65	-0.3
4,672,488	+		GFF4675	0.65	+0.3
4,672,522	+		GFF4675	0.68	+0.6
4,672,522	+		GFF4675	0.68	+1.7
4,672,522	+		GFF4675	0.68	-1.5
4,672,522	+		GFF4675	0.68	+0.8
4,672,522	+		GFF4675	0.68	-0.3
4,672,522	+		GFF4675	0.68	-0.5
4,672,522	+		GFF4675	0.68	+0.0
4,672,522	+		GFF4675	0.68	-0.4
4,672,522	+		GFF4675	0.68	+0.9
4,672,530	-		GFF4675	0.69	+0.6
4,672,530	-		GFF4675	0.69	+0.4
4,672,530	-		GFF4675	0.69	+0.1
4,672,530	-		GFF4675	0.69	-0.3
4,672,530	-		GFF4675	0.69	-1.2
4,672,530	-		GFF4675	0.69	-0.4
4,672,530	-		GFF4675	0.69	+0.5
4,672,530	-		GFF4675	0.69	+0.1
4,672,530	-		GFF4675	0.69	-0.3
4,672,541	-		GFF4675	0.70	-0.8
4,672,566	+		GFF4675	0.73	-0.8
4,672,566	+		GFF4675	0.73	+0.8
4,672,566	+		GFF4675	0.73	+0.5
4,672,566	+		GFF4675	0.73	+1.6
4,672,566	+		GFF4675	0.73	+1.2
4,672,566	+		GFF4675	0.73	+0.2
4,672,566	+		GFF4675	0.73	+0.9
4,672,566	+		GFF4675	0.73	+0.1
4,672,574	-		GFF4675	0.73	+0.7
4,672,574	-		GFF4675	0.73	-0.0
4,672,574	-		GFF4675	0.73	+0.8
4,672,574	-		GFF4675	0.73	-0.4
4,672,574	-		GFF4675	0.73	+0.5
4,672,574	-		GFF4675	0.73	+0.7
4,672,574	-		GFF4675	0.73	-0.6
4,672,574	-		GFF4675	0.73	+1.1
4,672,587	+		GFF4675	0.75	-0.2
4,672,595	-		GFF4675	0.75	-0.0
4,672,595	-		GFF4675	0.75	+0.3
4,672,595	-		GFF4675	0.75	-1.8
4,672,595	-		GFF4675	0.75	-0.5
4,672,612	+		GFF4675	0.77	-0.8
4,672,612	+		GFF4675	0.77	+0.1
4,672,628	+		GFF4675	0.78	-0.5
4,672,658	-		GFF4675	0.81	-1.7
4,672,676	-		GFF4675	0.83	+0.3
4,672,678	+		GFF4675	0.83	+1.1
4,672,678	+		GFF4675	0.83	+0.2
4,672,686	-		GFF4675	0.84	+0.5
4,672,686	-		GFF4675	0.84	+0.5
4,672,686	-		GFF4675	0.84	+0.8
4,672,688	+		GFF4675	0.84	+1.9
4,672,691	-		GFF4675	0.84	-1.5
4,672,691	-		GFF4675	0.84	+0.4
4,672,691	-		GFF4675	0.84	+1.2
4,672,738	+		GFF4675	0.89	-0.5
4,672,738	+		GFF4675	0.89	-1.5
4,672,738	+		GFF4675	0.89	-0.1
4,672,738	+		GFF4675	0.89	+1.3
4,672,738	+		GFF4675	0.89	-1.4
4,672,738	+		GFF4675	0.89	+0.5
4,672,746	-		GFF4675	0.90	+1.2
4,672,746	-		GFF4675	0.90	-0.3
4,672,746	-		GFF4675	0.90	-0.1
4,672,746	-		GFF4675	0.90	-0.5
4,672,751	+				+0.3
4,672,756	+				+1.4
4,672,756	+				+0.7
4,672,785	-				+0.9
4,672,787	+				-2.1
4,672,787	+				+0.7
4,672,787	+				+0.1
4,672,815	-				+1.4
4,672,830	-				-0.3
4,672,833	+				-1.8
4,672,833	+				+0.1
4,672,833	+				-0.3
4,672,833	+				+0.6
4,672,840	-				+0.8
4,672,840	-				+0.4
4,672,840	-				+0.1
4,672,841	-				+0.2
4,672,841	-				+0.7
4,672,932	-				-0.4
4,672,955	+				-0.6
4,672,955	+				+1.3
4,672,962	-				+0.7
4,672,963	-				+0.5
4,672,967	-				+1.4
4,672,967	-				+1.6
4,672,967	-				+0.4
4,672,979	+				+1.7
4,672,979	+				-0.0
4,672,979	+				+0.9
4,672,979	+				-0.7
4,672,989	+				+0.1
4,672,989	+				-0.4
4,672,989	+				-0.0
4,672,989	+				-0.7
4,672,997	-				+0.3
4,672,997	-				+0.1
4,673,014	+				+0.8
4,673,014	+				-1.0
4,673,022	+				+1.2
4,673,022	+				+0.7
4,673,022	+				+0.7
4,673,022	-				-0.3
4,673,022	-				+0.7
4,673,030	-				-1.9
4,673,030	-				+0.9
4,673,030	-				+1.3
4,673,030	-				-1.0
4,673,030	-				+1.5
4,673,032	-				-2.1
4,673,046	+				+0.8
4,673,054	-				-0.4
4,673,082	-				+1.1
4,673,099	-				+0.2
4,673,099	-				+0.1
4,673,099	-				+0.7
4,673,099	-				+0.6
4,673,099	-				+1.1
4,673,099	-				+0.1
4,673,117	-		GFF4676	0.10	-1.6
4,673,144	+		GFF4676	0.13	+1.4
4,673,144	+		GFF4676	0.13	+1.7
4,673,152	+		GFF4676	0.14	-0.1
4,673,152	-		GFF4676	0.14	-0.3
4,673,157	+		GFF4676	0.14	+0.0
4,673,158	-		GFF4676	0.15	+0.5
4,673,158	-		GFF4676	0.15	+0.5
4,673,202	-		GFF4676	0.20	+0.6
4,673,207	+		GFF4676	0.20	-0.6
4,673,207	+		GFF4676	0.20	+0.2
4,673,207	+		GFF4676	0.20	+1.7
4,673,207	+		GFF4676	0.20	-0.1
4,673,215	-		GFF4676	0.21	+0.3
4,673,215	-		GFF4676	0.21	-0.1
4,673,215	-		GFF4676	0.21	+0.1
4,673,216	-		GFF4676	0.21	+0.7
4,673,226	+		GFF4676	0.22	+0.1
4,673,227	+		GFF4676	0.22	+1.7
4,673,235	-		GFF4676	0.23	-1.5
4,673,244	+		GFF4676	0.24	+1.1
4,673,244	+		GFF4676	0.24	+0.5
4,673,244	+		GFF4676	0.24	+1.2
4,673,252	-		GFF4676	0.25	+1.8
4,673,252	-		GFF4676	0.25	-0.8
4,673,252	-		GFF4676	0.25	-0.2
4,673,262	+		GFF4676	0.26	-1.4
4,673,262	-		GFF4676	0.26	+1.2
4,673,271	+		GFF4676	0.27	-0.4
4,673,279	-		GFF4676	0.28	+1.0
4,673,279	-		GFF4676	0.28	+0.4
4,673,279	-		GFF4676	0.28	-1.0
4,673,317	+		GFF4676	0.32	-1.7
4,673,325	+		GFF4676	0.33	+1.4
4,673,330	+		GFF4676	0.34	-0.5
4,673,355	-		GFF4676	0.37	-1.5
4,673,366	-		GFF4676	0.38	-1.1
4,673,372	-		GFF4676	0.39	-0.7
4,673,416	-		GFF4676	0.44	-1.0
4,673,420	-		GFF4676	0.44	+0.5
4,673,432	-		GFF4676	0.45	+0.2
4,673,443	+		GFF4676	0.47	-1.6
4,673,444	+		GFF4676	0.47	-0.3
4,673,451	-		GFF4676	0.47	+0.4
4,673,487	+		GFF4676	0.52	+0.6
4,673,492	+		GFF4676	0.52	-1.1
4,673,492	+		GFF4676	0.52	+0.4
4,673,494	+		GFF4676	0.52	-0.3
4,673,507	-		GFF4676	0.54	+1.1
4,673,521	-		GFF4676	0.55	+0.9
4,673,523	+		GFF4676	0.56	+0.4
4,673,600	+		GFF4676	0.64	-1.5
4,673,600	+		GFF4676	0.64	+0.6
4,673,600	+		GFF4676	0.64	-0.8
4,673,600	+		GFF4676	0.64	+1.0
4,673,608	-		GFF4676	0.65	+0.3
4,673,608	-		GFF4676	0.65	+0.3
4,673,608	-		GFF4676	0.65	+0.4
4,673,608	-		GFF4676	0.65	+0.3
4,673,608	-		GFF4676	0.65	+0.9
4,673,617	+		GFF4676	0.66	-0.3
4,673,619	-		GFF4676	0.66	-0.7
4,673,630	-		GFF4676	0.68	+0.6
4,673,631	+		GFF4676	0.68	+1.1
4,673,632	-		GFF4676	0.68	+0.2
4,673,636	+		GFF4676	0.68	+0.8
4,673,652	-		GFF4676	0.70	+1.1
4,673,661	+		GFF4676	0.71	+0.6
4,673,662	+		GFF4676	0.71	-0.3
4,673,666	+		GFF4676	0.72	+0.1
4,673,666	+		GFF4676	0.72	+0.8
4,673,669	-		GFF4676	0.72	+0.5
4,673,687	-		GFF4676	0.74	+1.4
4,673,727	-		GFF4676	0.78	+1.0
4,673,756	+		GFF4676	0.82	-0.5
4,673,759	-		GFF4676	0.82	+0.6
4,673,762	+		GFF4676	0.82	+1.5
4,673,793	+		GFF4676	0.86	-0.9
4,673,793	+		GFF4676	0.86	+1.0
4,673,793	+		GFF4676	0.86	+1.1
4,673,793	+		GFF4676	0.86	+0.1
4,673,793	+		GFF4676	0.86	-0.6
4,673,793	-		GFF4676	0.86	-1.0
4,673,796	-		GFF4676	0.86	+0.1
4,673,801	-		GFF4676	0.87	+0.8
4,673,801	-		GFF4676	0.87	+1.4
4,673,801	-		GFF4676	0.87	+0.9
4,673,816	+		GFF4676	0.88	+1.6
4,673,816	+		GFF4676	0.88	+0.8
4,673,830	+				+0.2
4,673,830	+				+0.5
4,673,872	+				+0.3
4,673,886	+				+0.6
4,673,905	+				+1.3
4,673,908	+				+0.0
4,673,908	+				+0.4
4,673,908	+				+1.1
4,673,909	-				-0.7
4,673,916	-				-1.8
4,673,916	-				-0.1
4,673,916	-				+0.6
4,673,916	-				+1.3
4,673,918	-				-0.0
4,673,948	+				+0.5
4,673,952	+				+0.4
4,673,964	+				+0.5
4,673,971	+				-0.1
4,673,972	-				+0.5
4,674,011	-		GFF4677	0.12	+0.1
4,674,016	+		GFF4677	0.12	+0.7
4,674,016	+		GFF4677	0.12	+0.9
4,674,017	+		GFF4677	0.13	-0.4
4,674,029	-		GFF4677	0.14	-0.7
4,674,031	+		GFF4677	0.14	-0.4
4,674,034	-		GFF4677	0.15	-0.1
4,674,039	-		GFF4677	0.16	+0.9
4,674,102	+		GFF4677	0.24	-0.9
4,674,128	-		GFF4677	0.28	-0.6
4,674,181	+		GFF4677	0.35	+1.4
4,674,181	+		GFF4677	0.35	+0.9
4,674,181	+		GFF4677	0.35	-1.8
4,674,181	+		GFF4677	0.35	-0.8
4,674,189	-		GFF4677	0.36	+1.6
4,674,189	-		GFF4677	0.36	-1.5
4,674,189	-		GFF4677	0.36	-0.4
4,674,189	-		GFF4677	0.36	-0.0
4,674,189	-		GFF4677	0.36	-0.9
4,674,189	-		GFF4677	0.36	+1.0
4,674,189	-		GFF4677	0.36	+1.5
4,674,189	-		GFF4677	0.36	-2.0
4,674,189	-		GFF4677	0.36	+0.4
4,674,191	+		GFF4677	0.36	-1.6
4,674,213	-		GFF4677	0.39	+0.8
4,674,223	-		GFF4677	0.41	+0.6
4,674,229	+		GFF4677	0.42	+0.1
4,674,259	+		GFF4677	0.46	-0.9
4,674,259	+		GFF4677	0.46	+0.8
4,674,267	-		GFF4677	0.47	-1.4
4,674,305	-		GFF4677	0.52	-2.8
4,674,316	-		GFF4677	0.53	+1.3
4,674,321	+		GFF4677	0.54	-1.5
4,674,323	+		GFF4677	0.54	+0.9
4,674,394	+		GFF4677	0.64	+0.6
4,674,409	-		GFF4677	0.66	-0.4
4,674,461	+		GFF4677	0.73	+1.8
4,674,467	-		GFF4677	0.74	-2.5
4,674,467	-		GFF4677	0.74	-0.4
4,674,468	-		GFF4677	0.74	-0.5
4,674,476	+		GFF4677	0.75	-0.1
4,674,476	+		GFF4677	0.75	-0.6
4,674,500	+		GFF4677	0.79	-1.3
4,674,510	+		GFF4677	0.80	-0.2
4,674,510	+		GFF4677	0.80	-0.9
4,674,513	-		GFF4677	0.80	-0.7
4,674,515	+		GFF4677	0.81	+1.0
4,674,515	+		GFF4677	0.81	+0.2
4,674,515	+		GFF4677	0.81	+0.4
4,674,515	+		GFF4677	0.81	+1.1
4,674,515	+		GFF4677	0.81	-0.7
4,674,523	-		GFF4677	0.82	-0.6
4,674,523	-		GFF4677	0.82	+0.0
4,674,523	-		GFF4677	0.82	-1.4
4,674,525	+		GFF4677	0.82	-0.1
4,674,528	-		GFF4677	0.82	+0.3
4,674,530	+		GFF4677	0.83	-2.3
4,674,530	+		GFF4677	0.83	-0.1
4,674,530	+		GFF4677	0.83	-1.2
4,674,535	+		GFF4677	0.83	+0.2
4,674,538	-		GFF4677	0.84	-0.5
4,674,557	+		GFF4677	0.86	-0.5
4,674,601	-				-1.5
4,674,626	+				+0.5
4,674,626	-				+0.5
4,674,634	-				+0.9
4,674,634	-				-0.4
4,674,641	+				-2.4
4,674,673	+				-0.1
4,674,681	-				+0.6
4,674,692	+				-0.3
4,674,692	+				-1.0
4,674,692	+				-0.1
4,674,692	+				-0.6
4,674,700	-				+1.7
4,674,713	+				+0.4
4,674,721	+				+0.1
4,674,721	+				-0.4
4,674,721	-				-0.7
4,674,729	-				+0.4
4,674,729	-				-0.3
4,674,756	+				-1.6
4,674,764	-				-0.0
4,674,773	+				+2.4
4,674,773	+				-0.5
4,674,773	+				+1.4
4,674,781	-				-0.3
4,674,781	-				+1.2
4,674,786	-				+0.6
4,674,818	-		GFF4678	0.11	-1.0
4,674,818	-		GFF4678	0.11	+0.5
4,674,844	+		GFF4678	0.13	+0.6
4,674,862	-		GFF4678	0.14	-1.6
4,674,899	-		GFF4678	0.16	+0.3
4,674,903	+		GFF4678	0.16	+0.2
4,674,911	-		GFF4678	0.17	+0.2
4,674,911	-		GFF4678	0.17	-1.7